Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2005


 J.M. Kniss, G. Kindlmann, C.D. Hansen. “Multidimentional Transfer Functions for Volume Rendering,” In The Visualization Handbook, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 189--210. 2005.
ISBN: 0-12-387582-X


J.M. Kniss, R. Van Uitert, A.J. Stephens, G. Li, T. Tasdizen. “Statistically Quantitative Volume Visualization,” In IEEE Visualization 2005, 2005.


J.M. Kniss, A.E. Lefohn, N. Fout. “Deferred Filtering: Rendering from Difficult Data Formats,” In GPU Gems II: Programming Techniques for High-Performance Graphics and General-Purpose Computation, Ch. 41, Edited by M. Pharr and R. Fernando, Addison Wesley, pp. 669--677. 2005.


J.M. Kniss, A.E. Lefohn, R. Strzodka, S. Sengupta, J.D. Owens. “Octree Textures on Graphics Hardware,” In Proceedings of the ACM SIGGRAPH 2005 Conference on Abstracts and Applications, 2005.


D.H. Laidlaw, R.M. Kirby, C.D. Jackson, J.S. Davidson, T.S. Miller, M. Silva, W.H. Warren, M. Tarr. “Comparing 2D Vector Field Visualization Methods: A User Study,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 11, No. 1, pp. 59--70. 2005.


D. Laney, S.P. Callahan, N. Max, C.T. Silva, S. Langer, R. Frank. “Hardware-Assisted Simulated Radiography,” In Proceeding of IEEE Visualization 2005, pp. 44. 2005.


A.E. Lefohn, J.M. Kniss, J. Owens. “Implementing Efficient Parallel Data Structures on GPUs,” In GPU Gems II: Programming Techniques for High-Performance Graphics and General-Purpose Computation, Ch. 33, Edited by M. Pharr and R. Fernando, Addison Wesley, pp. 521--545. 2005.


A.E. Lefohn, S. Sengupta, J.M. Kniss, R. Strzodka, J.D. Owens. “Dynamic Adaptive Shadow Maps on Graphics Hardware,” In Proceedings of the ACM SIGGRAPH 2005 Conference on Abstracts and Applications, 2005.


S. Lew, C. Wolters, K. Lee, S. Makeig, G. Worrell, R.S. MacLeod. “Epileptogenic Source Localization For Open Skull Head Model of Epilepsy By Independent Component Analysis And Inverse Dipole Fit Method,” In 1st Annual Mountain West Biomedical Engineering Conference, 2005.


Y. Livnat. “Accelerated Isosurface Extraction Approaches,” In The Visualization Handbook, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 39--55. 2005.
ISBN: 0-12-387582-X


Y. Livnat, J. Agutter, S. Moon, R.F. Erbacher, S. Foresti. “A Visualization Paradigm for Network Intrusion Detection,” In IEEE Workshop on Information Assurance and Security 2005, pp. 30--37. June, 2005.


Y. Livnat, J. Agutter, S. Moon, S. Foresti. “Visual Correlation for Situational Awareness,” In Proceedings of The 2005 IEEE Symposium on Information Visualization, pp. 13. October, 2005.


Y. Livnat, X. Tricoche. “Shadows for Incomplete Point-based Isosurfaces,” SCI Institute Technical Report, No. UUSCI-2005-001, University of Utah, 2005.


P. Lorenzen, B. Davis, S. Joshi. “Unbiased Atlas Formation via Large Deformations Metric Mapping,” In Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv (MICCAI), Vol. 8 (Pt. 2), Edited by J.S. Duncan and G. Gerig, pp. 411--418. 2005.


H. Lu, M. Berzins, C.E. Goodyer, P.K. Jimack. “High Order Discontinuous Galerkin Method for EHL Line Contact Problems,” In Communication in Numerical Methods in Engineering, Vol. 21, No. 11, pp. 643--650. 2005.


T.J. Lujan, S.P. Lake, T.A. Plaizier, B.J. Ellis, J.A. Weiss. “Simultaneous Measurement of Three-Dimensional Joint Kinematics and Tissue Strains with Optical Methods,” In ASME Journal of Biomechanical Engineering, Vol. 127, pp. 193--197. 2005.


R.S. MacLeod, B. Yilmaz, B.B. Punske, B. Taccardi, D.H. Brooks. “Epicardial Activation Mapping from Multielectrode Venous Catheters,” In J. Electrocardiol., pp. (in press). 2005.


R.S. MacLeod, S. Shome, J.G. Stinstra, B.P. Punske, B. Hopenfeld. “Mechanisms of Ischemia-Induced ST-Segment Changes,” In J. Electrocardiol., Vol. 38(4 Suppl), pp. 8--13. November, 2005.


R.S. MacLeod. “Mechanisms of ischemia-induced ST-segment changes,” In Journal of Electrocardiology, Vol. 38, No. 4 , Elsevier, pp. 8--13. Oct, 2005.
DOI: 10.1016/j.jelectrocard.2005.06.095


R.S. MacLeod, F. Kornreich, A. van Oosterom, P. Rautaharju, R. Selvester, G. Wagner, C. Zywietz. “Report of the First Virtual Visualization of the Reconstructed Electrocardiographic Display Symposium,” In Journal of Electrocardiology, Vol. 38, pp. 385--399. 2005.