Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


 P.-T. Bremer, V. Pascucci, B. Hamann. “Maximizing adaptivity in hierarchical topological models,” In Trends in Software, Note: UCRL-BOOK-200013, Edited by T. Moeller and B. Hamann and B. Russell, Springer, pp. 121--130. January, 2004.


D.H. Brooks, A. Ghodrati, Y. Zhang, G. Tadmor, R.S. MacLeod. “Inverse Electrocardiography in the Framework of Dynamic Imaging Problems,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference, San Francisco, CA, pp. 3565--3568. September, 2004.


E. Bullitt, M.G. Ewend, S. Aylward, W. Lin, G. Gerig, S. Joshi, I. Jung, K. Muller, J. Smith. “Abnormal Vessel Tortuosity as a Marker of Treatment Response of Malignant Gliomas: Preliminary Report,” In Technol Cancer Res Treat, Vol. 3, No. 6, pp. 577--584. December, 2004.


S.P. Callahan, M. Ikits, J.L.D. Comba, C.T. Silva. “Hardware-Assisted Visibility Sorting for Unstructured Volume Rendering,” SCI Institute Technical Report, No. UUSCI-2004-003, University of Utah, June, 2004.


J. Cates, A. Lefohn, R.T. Whitaker. “GIST: an Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images,” No. UUCS-04-007, University of Utah School of Computing, 2004.


J. Cates, R.T. Whitaker, G.M. Jones. “Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation,” No. UUCS-04-006, University of Utah School of Computing, 2004.


J. Cates, A. Lefohn, R.T. Whitaker. “GIST: An Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images,” In Medical Image Analysis, Vol. 8, No. 3, pp. 217--231. September, 2004.


E. Chaney, S. Pizer, S. Joshi, R. Broadhurst, P.T. Fletcher, G. Gash, Q. Han, J.Y. Jeong, C. Lu, D. Merck, J. Stough, G. Tracton, M.D.J. Bechtel, J. Rosenman, Y.Y. Chi, K. Muller. “Automatic Male Pelvis Segmentation from CT Images via Statistically Trained Multi-Object Deformable M-rep Models,” In Presented at American Society for Therapeutic Radiology and Oncology (ASTRO), 2004.


A.B. Cheryauka, J.N. Lee, A.A. Samsonov, M. Defrise, G.T. Gullberg. “MRI Diffusion Tensor Reconstruction with PROPELLER Data Acquisition,” In J. Mag. Res. Imag., Vol. 22, No. 2, pp. 139--148. 2004.


M. Cole, F.B. Sachse, D.M. Weinstein, S.G. Parker, R.M. Kirby. “A Software Framework for Solving Problems of Bioelectricity Applying High-Order Finite Elements,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference, Vol. 1, pp. 821--824. 2004.


K. Cole-McLaughlin, V. Pascucci. “Multiresolution Representation of Topology,” In Proceedings of the 4th IASTED International Conference on Visualization, Imaging, And Image Processing (VIIP 2004), Marbella, Spain, Vol. 2004, Note: UCRL-PROC-208680, pp. 282--289. September, 2004.


J.L.D. Comba, J.S.B. Mitchell, C.T. Silva. “On the Convexification of Unstructured Grids From A Scientific Visualization Perspective,” SCI Institute Technical Report, No. UUSCI-2004-004, University of Utah, 2004.


J.G. Csernansky, L. Wang, S.C. Joshi, J.T. Ratnanather, M. Miller. “Computational Anatomy and Neuropsychiatric Disease: Probabilistic Assessment of Variation and Statistical Inference of Group Difference, Hemispheric Asymmetry, and Time-Dependent Change,” In Neuroimage, Vol. 23 Suppl. 1, pp. S56--S68. 2004.


Kostadin Damevski, Steven Parker. “Imprecise Exceptions in Distributed Parallel Components,” In Proceedings of the 10th International Euro-Par Conference, Lecture Notes in Computer Science, Vol. 3149, pp. 108--116. August/September, 2004.


E. Dam, P.T. Fletcher, S.M. Pizer, G. Tracton, J. Rosenman. “Prostate Shape Modeling based on Principal Geodesic Analysis Bootstrapping,” In Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp. 1008--1016. 2004.


R. Das, L. Krishnan, C. Evensen, J.A. Weiss. “MCL Healing at Early Time Points: Biomechanics and Gene Expression,” In Proceedings of 50th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, Vol. 29, pp. 892. March, 2004.


B. Davis, D. Prigent, J. Bechtel, J. Rosenman, D.M. Lovelock, S. Joshi. “Accommodating Bowel Gas in Large Deformation Image Registration for Adaptive Radiation Therapy of the Prostate,” In Proceedings of AAPM Annual Meeting, July, 2004.


B. Davis, P. Lorenzen, S. Joshi. “Large Deformation Minimum Mean Squared Error Template Estimation for Computational Anatomy,” In Proceedings of the International Symposium on Biomedical Imaging (ISBI), Piscataway, NJ, pp. 173--176. April, 2004.


D.E. DeMarle, C.P. Gribble, S.G. Parker. “Memory-Savvy Distributed Interactive Ray Tracing,” In Proceedings of The 6th Eurographics Symposium on Parallel Graphics and Visualization, Edited by Dirk Bartz and Bruno Raffin and Han-Wei Shen, 2004.


C. DeTar, A.L. Fogelson, C.R. Johnson, C.A. Sikorski, T. Truong. “Computational Engineering and Science Program at the University of Utah,” In Proceedings of the International Conference on Computational Science (ICCS) 2004, Lecture Notes in Computer Science (LNCS) 3039, part 4, Edited by M. Bubak et al, pp. 1202--1209. 2004.