Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


F. Du, S. Amer-Yahia, J. Freire. “ShreX: Managing XML Documents in Relational Databases,” In Proceedings of the 13th International Conference on Very Large Data Bases, Vol. 30, pp. 1297--1300. 2004.
ISBN: 0-12-088469-0



H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Local and Global Comparison of Continuous Functions,” In Proceedings of the IEEE Conference on Visualization (VIS-04), Note: UCRL-PROC-208677, pp. 275--280. October, 2004.



H. Edelsbrunner, J. Harer, A. Mascarenhas, V. Pascucci. “Time-Varying Reeb Graphs for Continuous Space-Time Data,” In SCG '04: Proceedings of the Twentieth Annual Symposium on Computational Geometry, Brooklyn, New York, USA, Note: UCRL-PROC-208697, ACM Press, pp. 366--372. 2004.
ISBN: 1-58113-885-7



P.T. Fletcher, C. Lu, S.M. Pizer, S. Joshi. “Principal Geodesic Analysis for the Study of Nonlinear Statistics of Shape,” In IEEE Trans Med Imaging, Vol. 23, No. 8, pp. 995--1005. August, 2004.



P.T. Fletcher, S. Joshi. “Principal Geodesic Analysis on Symmetric Spaces: Statistics of Diffusion Tensors,” In Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, Springer-Verlag, Lecture Notes In Computer Science, Vol. 3117, pp. 87--98. 2004.
DOI: 10.1109/TMI.2004.831793



P.T. Fletcher. “Statistical Variability in Nonlinear Spaces: Application to Shape Analysis and DT-MRI,” Note: Ph.D. Thesis, University of North Carolina Department of Computer Science, August, 2004.



J. Freire, M. Benedikt. “Managing XML Data: An Abridged Overview,” In Computing in Science and Engineering, Vol. 6, No. 4, IEEE Computer Society, pp. 12--19. 2004.
ISSN: 1521-9615



J. Freire, M. Ramanath, L. Zhang. “A Flexible Infrastructure for Gathering XML Statistics and Estimating Query Cardinality,” In Proceedings of the 20th International Conference on Data Engineering, pp. 857. 2004.
ISBN: 0-7695-2065-0



C. Garth, X. Tricoche, G. Scheuermann. “Tracking of Vector Field Singularities in Unstructured 3D Time-Dependent Datasets,” In Proceeding of IEEE Visualization 2004, pp. 329--336. 2004.



C. Garth, X. Tricoche, T. Salzbrunn, T. Bobach, G. Scheuermann. “Surface Techniques for Vortex Visualization,” In Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization, pp. 155--164. May, 2004.



A. Ghodrati, D.H. Brooks, R.S. MacLeod. “On Selecting and Using Reduced Sets of Leads for Electrocardiographic Imaging Using Reconstruction-Quality Criteria,” In Proceedings of The SIAM Conference on Imaging Science 2004, Salt Lake City, UT, Note: abstract., May, 2004.



A. Ghodrati, F. Calderero, D.H. Brooks, G. Tadmor, R.S. MacLeod. “A Level Sets Algorithm for the Inverse Problem of Electrocardiography,” In Proceedings of the Asilomar Conf. on Sig. and Sys., Vol. 2, pp. 1590--1594. November, 2004.



C.E. Goodyer, R. Fairlie, D.E. Hart, M. Berzins, L.E. Scales. “Calculation of Friction in Steady-State and Transient EHL Simulations Transient Processes in Tribology,” In Transient Processes in Tribology: Proceeding of the 31st Leeds-Lyon Symposium on Tribology, Edited by A.A. Lubrecht and G. Dalmaz, Elsevier, pp. 579--590. 2004.



C. Gribble, S.G. Parker, C.D. Hansen. “Interactive Volume Rendering of Large Datasets Using the Silicon Graphics Onyx4 Visualization System,” No. UUCS-04-003, University of Utah School of Computing, January 27th, 2004.



J.E. Guilkey, Y. Zhang, J.B. Hoying, J.A. Weiss. “Mechanical Simulation of Multicellular Structures with the Material Point Method,” In Proc 6th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Madrid, Spain, Note: Winner of the Taylor and Francis Prize for Outstanding Innovation in Computer Methods in Biomechanics and Biomedical Engineering, March, 2004.



Q. Han, C. Lu, G. Liu, S.M. Pizer, S. Joshi, A. Thall. “Representing Multi-Figure Anatomical Objects,” In Proceedings of the International Symposium on Biomedical Imaging (ISBI), Piscataway, NJ, pp. 1251--1254. 2004.



C.S. Henriquez, J.V. Tranquillo, D.M. Weinstein, E.W. Hsu, C.R. Johnson. “Three-dimensional Propagation in Mathematic Models: Integrative Model of the Mouse Heart,” In Cardiac Electrophysiology: From Cell to Bedside, 4th edition, Ch. 30, Edited by D.P. Zipes and J. Jalife, Saunders, pp. 273--281. 2004.



B. Hopenfeld, J.G. Stinstra, R.S. MacLeod. “Mechanism for ST Depression Associated with Contiguous Subendocardial Ischemia,” In J. Cardiovasc. Electrophysiol., Vol. 15, No. 10, pp. 1200--1206. 2004.



M. Ikits, J.M. Kniss, A.E. Lefohn, C.D. Hansen. “Volume Rendering Techniques,” In GPU Gems: Programming Techniques, Tipsand Tricks for Real-Time Graphics, Edited by Randima Fernando, Addison Wesley, pp. 667--692. 2004.



Won-Ki Jeong, Tolga Tasdizen, Ross Whitaker. “Anisotropic Diffusion of Height Field Data using Multigrid Solver on GPU,” In Proceedings ACM Workshop on General Purpose Computing on Graphics Processors, 2004, 2004.