Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2007


 O. Nemitz, T. Tasdizen, M. Rumpf, R.T. Whitaker. “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” In Journal of Mathematical Imaging and Vision, Vol. 7, No. 3, pp. 217--229. 2007.
DOI: 10.1007/s10851-006-0645-2


N. Sadeghi, T. Tasdizen, N.L. Foster, A.Y. Wang, S. Minoshima, A.P. Lieberman.. “Automatic Classification of Alzheimers Disease vs. Frontotemporal Dementia: A Decision Tree Approach with FDG-PET,” SCI Institute Technical Report, No. UUSCI-2007-016, University of Utah, 2007.

2006


 S.P. Awate, T. Tasdizen, N. Foster, R.T. Whitaker. “Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification,” SCI Institute Technical Report, No. UUSCI-2006-008, University of Utah, 2006.


S.P. Awate, T. Tasdizen, R.T. Whitaker. “Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,” In Proceedings of The European Conference on Computer Vision (ECCV) 2006 Springer, Lecture Notes in Computer Science, pp. 494--507. 2006.


S.P. Awate, T. Tasdizen, R.T. Whitaker. “Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,” SCI Institute Technical Report, No. UUSCI-2006-011, University of Utah, 2006.


S.P. Awate, E.V.R. DiBella, T. Tasdizen, R.T. Whitaker. “Model-Based Image Reconstruction for Dynamic Cardiac Perfusion MRI from Sparse Data,” In Proceedings of the 2006 IEEE Int. Conf. Engineering and Biology Society (EMBC), pp. 936--941. 2006.


S.P. Awate, T. Tasdizen, N.L. Foster, R.T. Whitaker. “Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification,” In Medical Image Analysis (MEDIA), Vol. 10, No. 5, pp. 726--739. 2006.


E. Jurrus, T. Tasdizen, P. Koshevoy, P.T. Fletcher, M. Hardy, C-B. Chien, W. Denk, R.T. Whitaker. “Axon Tracking in Serial Block-Face Scanning Electron Microscopy,” In Workshop on Microscopic Image Analysis with Applications in Biology, MICCAI, October, 2006.


P.A. Koshevoy, T. Tasdizen, R.T. Whitaker. “Implementation of an Automatic Slice-to-Slice Registration Tool,” SCI Institute Technical Report, No. UUSCI-2006-018, University of Utah, 2006.


P.A. Koshevoy, T. Tasdizen, R.T. Whitaker. “Implementation of an Automatic Image Registration Tool,” SCI Institute Technical Report, No. UUSCI-2006-020, University of Utah, 2006.


P. Koshevoy, T. Tasdizen, R.T. Whitaker, B. Jones, R. Marc. “Assembly of Large Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy,” In Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, October, 2006.


O. Nemitz, M. Rumpf, T. Tasdizen, R.T. Whitaker. “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” In Journal of Mathematical Imaging and Vision, Vol. 27, No. 3, pp. 217--229. April, 2006.

2005


 S.P. Awate, T. Tasdizen, R.T. Whitaker. “Nonparametric Statistics of Image Neighborhoods for Unsupervised Texture Segmentation,” SCI Institute Technical Report, No. UUSCI-2005-003, University of Utah, 2005.


L. Grady, T. Tasdizen. “A Geometric Multigrid Approach to Solving the 2D Inhomogeneous Laplace Equation with Internal Dirichlet Boundary Conditions,” In IEEE International Conference on Image Processing, Vol. 2, pp. 642--645. September, 2005.


J.M. Kniss, R. Van Uitert, A.J. Stephens, G. Li, T. Tasdizen. “Statistically Quantitative Volume Visualization,” In IEEE Visualization 2005, 2005.


T. Tasdizen, S.P. Awate, R.T. Whitaker, N. Foster. “MRI Tissue Classification with Neighborhood Statistics: A Nonparametric, Entropy-Minimizing Approach,” In Proceedings of The 8th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 517--525. 2005.
PubMed ID: 16685999


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Enhancement of Cell Boundaries in Transmission Micropscopy Images,” In IEEE International Conference on Image Processing, Vol. 2, pp. 129--132. 2005.


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images,” SCI Institute Technical Report, No. UUSCI-2005-008, University of Utah, 2005.


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images,” SCI Institute Technical Report, No. UUSCI-2005-007, University of Utah, 2005.

2004


 G. Kindlmann, A. L. Alexander, M. Lazar, J. Lee, T. Tasdizen, R.T. Whitaker. “An Algorithm for Moment-Based Global Registration of Echo Planar Diffusion-Weighted Images,” In Proceedings of 12th Annual ISMRM, pp. 2200. 2004.