Directory Packages/ModelCreation/Dataflow/Modules/FieldsCreate/

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jeroen 2006-05-13 01:48 Rev.: 34223

updates

0 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: DomainBoundary.cc (changed)

jeroen 2006-05-08 17:08 Rev.: 34169

Merge my algorithms from the ModelCreation package to Core/Algorithms so they are available for everyone. I added four directories to Core/Algorithms: Math for mathematical operations (mirrors Math in module tree), this currently has the FE code, Fields: my version of the field algorithms, these contain new ones and old ones with bug fixes to get my CardioWave stuff to work, Converter: Converter algorithms a series of converters to deal with conversion between Matrices, Nrrds and Fields, DataIO: gui less version for writing and reading in SCIRun files using PersistentIO or the Plug-ins. All the algorithms are grouped into libraries with one main header file: Algorithms/Math/MathAlgo.h Algorithms/Fields/FieldsAlgo.h Algorithms/DataIO/DataIOAlgo.h Algorithms/Converter/ConverterAlgo.h. Each library needs to be initialised with the ProgressReporter after which all the dynamic compilation is hidden from the user. I put all the algorithms in a separate namespace call SCIRunAlgo to avoid possible conflicts between class names. Similarly all the dynamic files will start with the word ALGO, to avoid duplication of filenames created by the current set of modules. --Jeroen

149 lines of code changed in 14 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: ClipFieldByFunction.cc (new), ClipFieldBySelectionMask.cc (new), CollectFields.cc (new 130), DomainBoundary.cc (+2 -2), MergeFields.cc (+2 -2), SplitFieldByConnectedRegion.cc (new), SplitFieldByDomain.cc (+3 -4), sub.mk (+4 -2)

jeroen 2006-05-05 19:18 Rev.: 34141

Updates to fix the changes I made in Core/Algorithms. Renamed a couple of modules to better represent the functionality. Remove Cardiac Visualization tools developed for CVRTI.

1 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: DomainBoundary.cc (+1 -1)

jeroen 2006-05-01 01:17 Rev.: 34056

Renamed CompartmentBoundary into DomainBoundary for more consistent naming, added framework for datastreaming (needs to be finished) add two modules for doing operations on a matrix on a row or column basis. Updated some of the module descriptions and various bug fixes.

94 lines of code changed in 3 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (del), DomainBoundary.cc (+93), sub.mk (+1 -1)

jeroen 2006-04-11 09:33 Rev.: 33821

Updates to various modules

17 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (new 17)

jeroen 2006-04-09 21:42 Rev.: 33812

Updates needed to generate phase map visualizations

13 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: MergeFields.cc (+13 -52)

jeroen 2006-04-08 16:00 Rev.: 33810

update to most recent version

76 lines of code changed in 4 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (+3 -3), SplitFieldByDomain.cc (+72), SplitFieldByElementData.cc (del), sub.mk (+1 -1)

jeroen 2006-03-26 21:16 Rev.: 33648

Fixes to the system to link opposing boundaries in a geometry

8 lines of code changed in 4 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (+8 -17), MatrixToField.cc (del), NrrdToField.cc (del), sub.mk (-2)

jeroen 2006-03-24 14:35 Rev.: 33637

Progress on linking opposing boundaries in FEM

22 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: ClipFieldBySelectionMask.cc (+11 -71), SplitFieldByElementData.cc (new 11)

jeroen 2006-03-23 19:59 Rev.: 33632

Some things got apparently not fixed when the Module class was redone

1 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: sub.mk (+1 -1)

dav 2006-03-22 21:17 Rev.: 33600

Two things coming on it commit:

1) Dataflow/Ports was moved into Dataflow/Network/Ports

- Fixed the sub.mk files to not use libDataflow_Ports as it is now part of
libDataflow_Network. Cleaned many of the sub.mk files up so that
libraries were only listed once.

- I've only tested these changes on the main Packages... I visually
inspected the others, don't know for sure if I got everything.

2) Clean up of Uintah problems from the large commit Marty made earlier

- continue to use getID() for patches.

- another commit is coming shortly to continue the fixes for Uintah

14 lines of code changed in 8 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: ClipFieldByFunction.cc (+3 -3), ClipFieldBySelectionMask.cc (+2 -2), CompartmentBoundary.cc (+1 -1), MatrixToField.cc (new 2), MergeFields.cc (+1 -1), NrrdToField.cc (new 2), SplitFieldByConnectedRegion.cc (+2 -2), SplitFieldByElementData.cc (+1 -1)

mjc 2006-03-22 16:42 Rev.: 33591

add with-tetgen option to configure, Make Module.h conform to the coding standard, and all the massive fallout from renaming variables and slots in that class

36 lines of code changed in 8 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: ClipFieldByFunction.cc (+15 -15), ClipFieldBySelectionMask.cc (+4 -4), CompartmentBoundary.cc (+5 -5), MatrixToField.cc (+1 -1), MergeFields.cc (+6 -6), NrrdToField.cc (+1 -1), SplitFieldByConnectedRegion.cc (+2 -2), SplitFieldByElementData.cc (+2 -2)

jeroen 2006-03-06 13:59 Rev.: 33417

Updates of functions that are called by the CardioWave interface

93 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: NrrdToField.cc (+92), sub.mk (+1)

jeroen 2006-02-13 16:47 Rev.: 33256

Bug fixes

6 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (+6 -2)

jeroen 2006-02-12 13:54 Rev.: 33250

Rewrote BuidFEMatrix, so other modules can call it as a library function. Added a converter from matrix to field (as the route using nrrds is still broken). Improved functions to build membrane models in a volume conductor

93 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: MatrixToField.cc (+92), sub.mk (+1)

jeroen 2006-02-09 10:46 Rev.: 33206

Added new modules and FieldAlgorithms for computation of geometry of cellular models

114 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: SplitFieldByConnectedRegion.cc (+113), sub.mk (+1)

jeroen 2006-02-01 13:26 Rev.: 33133

Updates to modules

22 lines of code changed in 1 file:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (+22 -2)

jeroen 2006-01-29 13:58 Rev.: 33098

Updates for generating spherical models and segmenting out internal boundaries, first stage of adding in support for rotatting tensors and vectors when transforming fields

79 lines of code changed in 2 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: CompartmentBoundary.cc (+78), sub.mk (+1)

jeroen 2006-01-24 11:45 Rev.: 33069

Continuation of development of ModelCreation package

22 lines of code changed in 4 files:

• Packages/ModelCreation/Dataflow/Modules/FieldsCreate: ClipFieldByFunction.cc (+2 -2), ClipFieldBySelectionMask.cc (+2 -11), MergeFields.cc (+16 -14), SplitFieldByElementData.cc (+2 -11)