Directory Packages/ModelCreation/Dataflow/XML/

Total Files:
86
Deleted Files:
6
Lines of Code:
5491

[root]/Packages/ModelCreation/Dataflow/XML

Lines of Code

Packages/ModelCreation/Dataflow/XML/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
jeroen 210 (100.0%) 2443 (100.0%) 11.6

Most Recent Commits

jeroen 2006-05-18 15:06 Rev.: 34281

Adding functionality to stream time adaptive signals. TimeToWeights takes in a vector with times and creates the weights of the nearest timeframes and does a linear interpolation. This module serves as input for StreamMatrix which has a port with weights that describe how multiple columns or rows need to be combined into one. Note: the weights here are not compatible yet with MatrixSelectVector, that module uses a custom system to do a sparse matrix. StreamMatrix and TimeToWeights use the default sparse matrix to define weights.

41 lines of code changed in 1 file:

  • Packages/ModelCreation/Dataflow/XML: TimeToWeights.xml (new 41)
jeroen 2006-05-08 17:08 Rev.: 34169

Merge my algorithms from the ModelCreation package to Core/Algorithms so they are available for everyone. I added four directories to Core/Algorithms: Math for mathematical operations (mirrors Math in module tree), this currently has the FE code, Fields: my version of the field algorithms, these contain new ones and old ones with bug fixes to get my CardioWave stuff to work, Converter: Converter algorithms a series of converters to deal with conversion between Matrices, Nrrds and Fields, DataIO: gui less version for writing and reading in SCIRun files using PersistentIO or the Plug-ins. All the algorithms are grouped into libraries with one main header file: Algorithms/Math/MathAlgo.h Algorithms/Fields/FieldsAlgo.h Algorithms/DataIO/DataIOAlgo.h Algorithms/Converter/ConverterAlgo.h. Each library needs to be initialised with the ProgressReporter after which all the dynamic compilation is hidden from the user. I put all the algorithms in a separate namespace call SCIRunAlgo to avoid possible conflicts between class names. Similarly all the dynamic files will start with the word ALGO, to avoid duplication of filenames created by the current set of modules. --Jeroen

99 lines of code changed in 7 files:

  • Packages/ModelCreation/Dataflow/XML: CollectFields.xml (new 35), FieldDataElemToNode.xml (new), FieldDataNodeToElem.xml (-4), GetFieldData.xml (new 29), SetFieldData.xml (new 35)
jeroen 2006-05-05 19:18 Rev.: 34141

Updates to fix the changes I made in Core/Algorithms. Renamed a couple of modules to better represent the functionality. Remove Cardiac Visualization tools developed for CVRTI.

61 lines of code changed in 19 files:

  • Packages/ModelCreation/Dataflow/XML: ColorMap2Writer.xml (+6), ColorMapWriter.xml (+6), FieldWriter.xml (+6), MatrixWriter.xml (+6), PathWriter.xml (+6), SplitFieldByConnectedRegion.xml (new), SplitFieldByDomain.xml (+4 -3), StringWriter.xml (new), TriSurfPhaseFilter.xml (del), Unstructure.xml (new)
jeroen 2006-05-01 01:17 Rev.: 34056

Renamed CompartmentBoundary into DomainBoundary for more consistent naming, added framework for datastreaming (needs to be finished) add two modules for doing operations on a matrix on a row or column basis. Updated some of the module descriptions and various bug fixes.

274 lines of code changed in 17 files:

  • Packages/ModelCreation/Dataflow/XML: AppendDataArrays.xml (new), ApplyColumnOperation.xml (new 37), ApplyRowOperation.xml (new 37), BuildFEMatrix.xml (new), BundleReader.xml (new), BundleWriter.xml (+6), CompartmentBoundary.xml (del), DomainBoundary.xml (new 48), MatrixToField.xml (+8 -4), MatrixToString.xml (new), StreamMatrix.xml (new 91)
jeroen 2006-04-26 01:35 Rev.: 34014

Update package with latest developments

65 lines of code changed in 2 files:

  • Packages/ModelCreation/Dataflow/XML: DataArrayMeasure.xml (new 30), MatricesToDipoleField.xml (new 35)
jeroen 2006-04-24 13:46 Rev.: 33978

Adding Filename output ports for file readers so one can add the filename in the viewer automatically. Fixing problem with std namespaces being added by SCIRun include files. Using explicit namespace declarations to avoid problem by spill over of other namespaces included using 'using namespace'

28 lines of code changed in 13 files:

  • Packages/ModelCreation/Dataflow/XML: BundleReader.xml (+4), ColorMap2Reader.xml (new), ColorMapReader.xml (+4), FieldReader.xml (new), MatrixReader.xml (new), PathReader.xml (+4), StringReader.xml (+4)
jeroen 2006-04-15 23:26 Rev.: 33875

bug fixes

41 lines of code changed in 1 file:

  • Packages/ModelCreation/Dataflow/XML: ScaleField.xml (new 41)
jeroen 2006-04-11 09:33 Rev.: 33821

Updates to various modules

6 lines of code changed in 5 files:

  • Packages/ModelCreation/Dataflow/XML: CompartmentBoundary.xml (new 1), DistanceToField.xml (+1 -1), LinkFieldBoundary.xml (new)
jeroen 2006-04-09 21:42 Rev.: 33812

Updates needed to generate phase map visualizations

4 lines of code changed in 1 file:

  • Packages/ModelCreation/Dataflow/XML: TriSurfPhaseFilter.xml (new 4)
jeroen 2006-04-08 16:00 Rev.: 33810

update to most recent version

317 lines of code changed in 17 files:

  • Packages/ModelCreation/Dataflow/XML: BuildFEMatrix.xml (+18 -6), CompartmentBoundary.xml (+1 -1), CuthillMcKee.xml (new 38), DistanceToBoundary.xml (new), DistanceToField.xml (-4), IsInsideField.xml (new), LinkFieldBoundary.xml (+3 -3), LinkFieldBoundaryByElement.xml (del), LinkToCompGrid.xml (new 36), LinkToCompGridByDomain.xml (new 40), ResizeMatrix.xml (new 38), ReverseCuthillMcKee.xml (new 38), SplitFieldByDomain.xml (+67), SplitFieldByElementData.xml (del), TriSurfPhaseFilter.xml (+36)
jeroen 2006-03-28 18:11 Rev.: 33669

Bug fixes and updates

7 lines of code changed in 2 files:

  • Packages/ModelCreation/Dataflow/XML: BuildFEMatrix.xml (+4), LinkFieldBoundaryByElement.xml (new 3)
jeroen 2006-03-26 21:16 Rev.: 33648

Fixes to the system to link opposing boundaries in a geometry

41 lines of code changed in 7 files:

  • Packages/ModelCreation/Dataflow/XML: CompartmentBoundary.xml (+4), LinkFieldBoundary.xml (-4), LinkFieldBoundaryByElement.xml (+4 -3), MatrixToField.xml (+1 -1), MatrixToString.xml (+31), NrrdToField.xml (new)
jeroen 2006-03-23 19:59 Rev.: 33632

Some things got apparently not fixed when the Module class was redone

42 lines of code changed in 1 file:

  • Packages/ModelCreation/Dataflow/XML: LinkFieldBoundaryByElement.xml (+42)
jeroen 2006-03-22 10:12 Rev.: 33584

Sync package with latest development

312 lines of code changed in 4 files:

  • Packages/ModelCreation/Dataflow/XML: BuildFEMatrix.xml (+38), ComputeFieldNodes.xml (new 136), ComputeFieldsNodes.xml (new 100), LinkFieldBoundary.xml (+38)
jeroen 2006-03-06 13:59 Rev.: 33417

Updates of functions that are called by the CardioWave interface

257 lines of code changed in 5 files:

  • Packages/ModelCreation/Dataflow/XML: NrrdToField.xml (+31), SelectAndReplaceFieldData.xml (del), SelectAndReplaceFieldsData.xml (del), SelectAndSetFieldData.xml (new 131), SelectAndSetFieldsData.xml (new 95)
jeroen 2006-02-12 13:54 Rev.: 33250

Rewrote BuidFEMatrix, so other modules can call it as a library function. Added a converter from matrix to field (as the route using nrrds is still broken). Improved functions to build membrane models in a volume conductor

31 lines of code changed in 1 file:

  • Packages/ModelCreation/Dataflow/XML: MatrixToField.xml (+31)
jeroen 2006-02-09 10:46 Rev.: 33206

Added new modules and FieldAlgorithms for computation of geometry of cellular models

265 lines of code changed in 3 files:

  • Packages/ModelCreation/Dataflow/XML: SelectAndReplaceFieldData.xml (new 135), SelectAndReplaceFieldsData.xml (new 99), SplitFieldByConnectedRegion.xml (+31)
jeroen 2006-01-29 13:58 Rev.: 33098

Updates for generating spherical models and segmenting out internal boundaries, first stage of adding in support for rotatting tensors and vectors when transforming fields

64 lines of code changed in 4 files:

  • Packages/ModelCreation/Dataflow/XML: CompartmentBoundary.xml (+31), MergeNodes.xml (new 31), SphericalSurface.xml (new)
jeroen 2006-01-25 00:06 Rev.: 33079

Bug fixes/ upgrading XML files

297 lines of code changed in 95 files:

  • Packages/ModelCreation/Dataflow/XML: AppendDataArrays.xml (+1 -7), BundleReader.xml (+3 -7), BundleWriter.xml (+7 -10), ClipFieldByFunction.xml (new), ClipFieldBySelectionMask.xml (new), ColorMap2Reader.xml (+10 -11), ColorMap2Writer.xml (+9 -11), ColorMapReader.xml (+21 -12), ColorMapWriter.xml (+15 -12), ComposeTensorArray.xml (+5 -13), ComposeVectorArray.xml (+2 -6), ComputeDataArray.xml (-6), ComputeFieldData.xml (-6), ComputeFieldsData.xml (new), ConvertToPointCloud.xml (new), ConvertToTetVol.xml (+2 -6), ConvertToTriSurf.xml (+2 -6), CreateFieldData.xml (-6), DataArrayInfo.xml (+3 -14), DecomposeTensorArray.xml (+2 -13), DecomposeVectorArray.xml (new), DistanceToBoundary.xml (+3 -14), DistanceToField.xml (+2 -13), FieldDataElemToNode.xml (+8 -19), FieldDataNodeToElem.xml (+8 -19), FieldGetMatrixProperty.xml (new), FieldGetStringProperty.xml (new), FieldInfo.xml (-25), FieldReader.xml (+20 -12), FieldSetMatrixProperty.xml (new), FieldSetStringProperty.xml (new), FieldWriter.xml (+16 -12), IndicesToDataArray.xml (new), IndicesToSelectionMask.xml (new), IsInsideField.xml (+3 -7), MappingMatrixToField.xml (+8 -7), MatrixInfo.xml (+3 -6), MatrixReader.xml (+20 -12), MatrixWriter.xml (+18 -13), MergeFields.xml (-8), ParameterList.xml (new), ParameterListMatrix.xml (new), ParameterListString.xml (+2 -13), PathReader.xml (+20 -12), PathWriter.xml (+16 -12), ReplicateDataArray.xml (new), SelectByFieldData.xml (-6), SelectByFieldsData.xml (new), SelectionMaskAND.xml (new), SelectionMaskNOT.xml (new), SelectionMaskOR.xml (new), SelectionMaskToIndices.xml (+2 -6), SelectionMaskXOR.xml (+2 -6), SignedDistanceToField.xml (+2 -6), SphericalSurface.xml (+2 -13), SplitFieldByElementData.xml (new 7), StringReader.xml (+5 -14), StringWriter.xml (+2 -13), Unstructure.xml (+2 -6)
jeroen 2006-01-24 11:45 Rev.: 33069

Continuation of development of ModelCreation package

191 lines of code changed in 5 files:

  • Packages/ModelCreation/Dataflow/XML: ConvertToPointCloud.xml (+36), ConvertToTetVol.xml (+36), ConvertToTriSurf.xml (+36), SphericalSurface.xml (+47), Unstructure.xml (+36)
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