Finding and Managing Literature
Scientists have to gather, read, and keep track of a huge range of
papers and source materials. Here I have gathered a few resources and
ideas for managing this without losing complete control.
Searching for Citations
There are a lot of databases out there for searching, more all the time.
We have a number of excellent ones available through the University of Utah
libraries and here are some pointers to my favorites.
The new policy from NIH on public access to publications will also
change the landscape as more and more papers start to populate the
database.
AI Assisted Literature Searching
The world is changing quickly around AI-assisted everything and literature
searching is no different. Here is info about a tool called scite that we
in Utah are testing out.
Some other options include the following:
General Search Sites
Note: please send me links to publicly accessible
literature databases in the areas of engineering and for conference
proceedings. Pubmed and Medline have the medical world covered very well
but Engineering is missing such a comprehensive resource.
-
PubMed Medline Database (See for a
parsing BibTeX tool for PubMed output.)
- TeXMED, an
interface to PubMed that returns hits in BibTeX format.
- Science Direct Web
Editions (from Elsevier) with a large list of journals available
online. This one might even lead you inside your university library
proxy for direct access.
- Web of Science a host
of products from Clarivate.
- Scopus, a comprehensive, multidisciplinary, trusted abstract and
citation database.
- Core , the world’s largest
collection of open access research papers.
- CiteSeer a resource
focused primarily on the literature in computer and information
science. It contains resources beyond papers, e.g., algorithms,
software, etc.
- Amedeo Medical literature guide
(offers subscriptions to weekly lists of abstracts on selected
topics). Its goal is to serve the needs of healthcare professionals,
including physicians, nurses, pharmacists, administrators, other
members of the health professions, and patients and their friends.
- AIP Publishing : mission is to
advance, promote, and serve the physical sciences for the benefit of
humanity by empowering researchers and breaking down barriers to
open, equitable research communication.
-
Department of Energy's DOE Bridge, to publications from DOE
projects and national labs.
-
Canadian NRC Publications Archive of Canadian science journals.
- Online
Books, a huge collection.
-
Nelson Beebe's collection of bibtex files. There are entries
here for a lot of journals as well as pointers to support software.
Journal Search Sites
Lots of journals now let you search and even download articles, a
wonderful way to avoid a trip to the library.
Getting articles
While we have access to many journals through the library (thank you,
University of Utah!) and PubMed Central (thank you, NIH) there are times
when we need additional resources. For this, we have ILLIAD. Here are the
steps to getting an article from this system.
- To do this, go to the ILLIAD website
- Login or click the First User link to set up an account.
- On the left is a menu bar, select the "Article" option under the
"New Request" Heading Fill in the required info about the article and
submit it.
- Within a few days, they will send it to you. NOTE: You can only
request 10 per day and they will reject it if you can find it by some
other (free) means, so make sure that it isn't available over PubMed or
IEEE or google scholar. (I've also been rejected on one published by KIT
in a german journal).
Libraries
Done stupidly, managing a literature database can be as much fun as
visiting the endodontist, but there are smarter ways to go. Use them and
your visit to the dentist becomes a chat with the nice lady who cleans your
teeth.
Some sensible ways to manage references are:
- BibTex , my clear
favorite. It is not a full featured tool like those above but a
simple text file database that interacts with LaTeX. In fact, many of
the products listed above will generate output in BibTex format.
Some of the tools below export the database as a BibTex formatted
file, which is nice.
- Zotero, This is the new leader
for scientific use (forget Mendelay, which Elsevier has abandoned) so
this is the place to start. It has free accounts and shared pro
accounts for groups. I am still exploring its features.
- EndNote, a reasonable and
very widely used commercial product for Macs and PCs. It fails
miserably when documents and databses get large but for small
projects, it is fine. At $250 (there are some educational
discounts), this is the most expensive of the tools.
- Parsing downloads from PubMed One
example of a tool to convert references into BibTex format is this
program I wrote in awk that will take the output of literature
searches on
PubMed Medline and convert them.
- Using EndNote together with BibTex
- TeXMED,
a utilty to searching PubMed and returning BibTex formatted hits. I
have no firsthand experience with this one.
- Overleaf blog for Edifix,
which is a web based service for converting plain text bibliograpy to
BibTex entries.
Finding the right journal
Finding the best journal for your submission can also be challenging and
there are some solutions to guide this process. Try these out:
Guidelines for Authors
Here are pointers to the guidelines that we use when submitting papers to
different journals.
Last modified: Sun Oct 27 14:18:41 MDT 2024