SCIRun
5.0
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#include <ImageMesh.h>
Classes | |
struct | Cell |
struct | Edge |
class | ElemData |
struct | Face |
struct | IFaceIndex |
struct | IFaceIter |
struct | IFaceSize |
struct | ImageIndex |
struct | ImageIter |
struct | ImageSize |
struct | INodeIndex |
struct | INodeIter |
struct | INodeSize |
struct | Node |
Index and Iterator types required for Mesh Concept. More... | |
Public Types | |
typedef SCIRun::index_type | under_type |
typedef SCIRun::index_type | index_type |
typedef SCIRun::size_type | size_type |
typedef SCIRun::mask_type | mask_type |
typedef boost::shared_ptr < ImageMesh< Basis > > | handle_type |
typedef Basis | basis_type |
typedef Face | Elem |
typedef Edge | DElem |
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enum | { UNKNOWN = 0, STRUCTURED = 1 << 1, UNSTRUCTURED = 1 << 2, REGULAR = 1 << 3, IRREGULAR = 1 << 4 } |
These will become obsolete at some point. More... | |
enum | { NONE_E = 0, NODES_E = 1 << 0, EDGES_E = 1 << 1, FACES_E = 1 << 2, CELLS_E = 1 << 3, ELEMS_E = 1 << 4, DELEMS_E = 1 << 5, ENODES_E = 1 << 6, ALL_ELEMENTS_E = NODES_E | EDGES_E | FACES_E | CELLS_E | ENODES_E | ELEMS_E | DELEMS_E, NORMALS_E = 1 << 7, NODE_NEIGHBORS_E = 1 << 8, ELEM_NEIGHBORS_E = 1 << 9, NEIGHBORS_E = NODE_NEIGHBORS_E | ELEM_NEIGHBORS_E, NODE_LOCATE_E = 1 << 10, ELEM_LOCATE_E = 1 << 11, LOCATE_E = NODE_LOCATE_E | ELEM_LOCATE_E, EPSILON_E = 1 << 12, BOUNDING_BOX_E = 1 << 12, FIND_CLOSEST_NODE_E = 1 << 13, FIND_CLOSEST_ELEM_E = 1 << 14, FIND_CLOSEST_E = FIND_CLOSEST_NODE_E | FIND_CLOSEST_ELEM_E } |
Synchronize system. More... | |
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typedef HasIntegerId::id_type | id_type |
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typedef IdType | id_type |
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typedef SCIRun::mask_type | mask_type |
typedef SCIRun::index_type | under_type |
typedef SCIRun::index_type | index_type |
typedef SCIRun::index_type | size_type |
typedef std::vector< index_type > | array_type |
typedef std::vector< size_type > | dimension_type |
typedef boost::shared_ptr < MeshFacade< VMesh > > | MeshFacadeHandle |
Public Member Functions | |
ImageMesh () | |
ImageMesh (size_type x, size_type y, const Core::Geometry::Point &min, const Core::Geometry::Point &max) | |
ImageMesh (ImageMesh *mh, size_type mx, size_type my, size_type x, size_type y) | |
ImageMesh (const ImageMesh ©) | |
virtual ImageMesh * | clone () const |
virtual | ~ImageMesh () |
MeshFacadeHandle | getFacade () const |
virtual VMesh * | vmesh () |
Access point to virtual interface. More... | |
virtual int | basis_order () |
virtual bool | has_normals () const |
virtual bool | has_face_normals () const |
virtual bool | is_editable () const |
Basis & | get_basis () |
void | pwl_approx_edge (std::vector< std::vector< double > > &coords, typename Elem::index_type, unsigned int which_edge, unsigned int div_per_unit) const |
void | pwl_approx_face (std::vector< std::vector< std::vector< double > > > &coords, typename Elem::index_type, unsigned int, unsigned int div_per_unit) const |
template<class VECTOR > | |
bool | get_coords (VECTOR &coords, const Core::Geometry::Point &p, typename Elem::index_type idx) const |
template<class VECTOR > | |
void | interpolate (Core::Geometry::Point &pt, const VECTOR &coords, typename Elem::index_type idx) const |
template<class VECTOR1 , class VECTOR2 > | |
void | derivate (const VECTOR1 &coords, typename Elem::index_type idx, VECTOR2 &J) const |
template<class VECTOR > | |
double | det_jacobian (const VECTOR &coords, typename Elem::index_type idx) const |
template<class VECTOR > | |
void | jacobian (const VECTOR &coords, typename Elem::index_type idx, double *J) const |
template<class VECTOR > | |
double | inverse_jacobian (const VECTOR &coords, typename Elem::index_type idx, double *Ji) const |
double | scaled_jacobian_metric (typename Elem::index_type) const |
double | jacobian_metric (typename Elem::index_type) const |
size_type | get_min_i () const |
get the mesh statistics More... | |
size_type | get_min_j () const |
bool | get_min (std::vector< index_type > &) const |
size_type | get_ni () const |
size_type | get_nj () const |
virtual bool | get_dim (std::vector< size_type > &) const |
Core::Geometry::Vector | diagonal () const |
virtual Core::Geometry::BBox | get_bounding_box () const |
virtual void | transform (const Core::Geometry::Transform &t) |
virtual void | get_canonical_transform (Core::Geometry::Transform &t) |
virtual bool | synchronize (mask_type sync) |
virtual bool | unsynchronize (mask_type sync) |
bool | clear_synchronization () |
void | set_min_i (index_type i) |
set the mesh statistics More... | |
void | set_min_j (index_type j) |
void | set_min (std::vector< index_type > mins) |
void | set_ni (size_type i) |
void | set_nj (size_type j) |
virtual void | set_dim (std::vector< size_type > dims) |
void | begin (typename Node::iterator &) const |
void | begin (typename Edge::iterator &) const |
void | begin (typename Face::iterator &) const |
void | begin (typename Cell::iterator &) const |
void | end (typename Node::iterator &) const |
void | end (typename Edge::iterator &) const |
void | end (typename Face::iterator &) const |
void | end (typename Cell::iterator &) const |
void | size (typename Node::size_type &) const |
void | size (typename Edge::size_type &) const |
void | size (typename Face::size_type &) const |
void | size (typename Cell::size_type &) const |
void | to_index (typename Node::index_type &index, index_type i) const |
void | to_index (typename Edge::index_type &index, index_type i) const |
void | to_index (typename Face::index_type &index, index_type i) const |
void | to_index (typename Cell::index_type &, index_type) const |
void | get_nodes (typename Node::array_type &, typename Edge::index_type) const |
get the child elements of the given index More... | |
void | get_nodes (typename Node::array_type &, typename Face::index_type) const |
void | get_nodes (typename Node::array_type &, typename Cell::index_type) const |
void | get_edges (typename Edge::array_type &, typename Face::index_type) const |
void | get_edges (typename Edge::array_type &, typename Cell::index_type) const |
void | get_faces (typename Face::array_type &, typename Cell::index_type) const |
void | get_faces (typename Face::array_type &a, typename Face::index_type f) const |
void | get_elems (typename Elem::array_type &result, typename Node::index_type idx) const |
get the parent element(s) of the given index More... | |
void | get_elems (typename Elem::array_type &result, typename Edge::index_type idx) const |
void | get_elems (typename Elem::array_type &, typename Face::index_type) const |
void | get_delems (typename DElem::array_type &result, const typename Elem::index_type &idx) const |
Wrapper to get the derivative elements from this element. More... | |
void | get_faces (typename Face::array_type &arr, const Core::Geometry::BBox &box) |
return all face_indecies that overlap the BBox in arr. More... | |
double | get_size (const typename Node::index_type &) const |
Get the size of an element (length, area, volume) More... | |
double | get_size (typename Edge::index_type idx) const |
double | get_size (const typename Face::index_type &idx) const |
double | get_size (typename Cell::index_type) const |
double | get_length (typename Edge::index_type idx) const |
double | get_area (typename Face::index_type idx) const |
double | get_volume (typename Cell::index_type) const |
bool | get_neighbor (typename Face::index_type &neighbor, typename Face::index_type from, typename Edge::index_type idx) const |
void | get_neighbors (typename Face::array_type &array, typename Face::index_type idx) const |
void | get_normal (Core::Geometry::Vector &, const typename Node::index_type &) const |
void | get_normal (Core::Geometry::Vector &result, std::vector< double > &coords, typename Elem::index_type eidx, index_type) |
void | get_center (Core::Geometry::Point &, const typename Node::index_type &) const |
get the center point (in object space) of an element More... | |
void | get_center (Core::Geometry::Point &, typename Edge::index_type) const |
void | get_center (Core::Geometry::Point &, const typename Face::index_type &) const |
void | get_center (Core::Geometry::Point &, typename Cell::index_type) const |
bool | locate (typename Node::index_type &, const Core::Geometry::Point &) const |
bool | locate (typename Edge::index_type &, const Core::Geometry::Point &) const |
bool | locate (typename Face::index_type &, const Core::Geometry::Point &) const |
bool | locate (typename Cell::index_type &, const Core::Geometry::Point &) const |
int | get_weights (const Core::Geometry::Point &p, typename Node::array_type &l, double *w) |
int | get_weights (const Core::Geometry::Point &, typename Edge::array_type &, double *) |
int | get_weights (const Core::Geometry::Point &p, typename Face::array_type &l, double *w) |
int | get_weights (const Core::Geometry::Point &, typename Cell::array_type &, double *) |
void | get_point (Core::Geometry::Point &p, const typename Node::index_type &i) const |
void | get_random_point (Core::Geometry::Point &, const typename Elem::index_type &, FieldRNG &rng) const |
virtual void | io (Piostream &) |
Export this class using the old Pio system. More... | |
virtual std::string | dynamic_type_name () const |
Core::Geometry::Transform & | get_transform () |
Core::Geometry::Transform & | set_transform (const Core::Geometry::Transform &trans) |
virtual int | dimensionality () const |
virtual int | topology_geometry () const |
virtual const TypeDescription * | get_type_description () const |
bool | find_closest_node (double &pdist, Core::Geometry::Point &result, typename Node::index_type &elem, const Core::Geometry::Point &p) const |
bool | find_closest_node (double &pdist, Core::Geometry::Point &result, typename Node::index_type &elem, const Core::Geometry::Point &p, double maxdist) const |
template<class ARRAY > | |
bool | find_closest_elem (double &pdist, Core::Geometry::Point &result, ARRAY &coords, typename Elem::index_type &elem, const Core::Geometry::Point &p, double maxdist) const |
bool | find_closest_elem (double &pdist, Core::Geometry::Point &result, typename Elem::index_type &elem, const Core::Geometry::Point &p) const |
template<class ARRAY > | |
bool | find_closest_elem (double &pdist, Core::Geometry::Point &result, ARRAY &coords, typename Elem::index_type &elem, const Core::Geometry::Point &p) const |
bool | find_closest_elems (double &pdist, Core::Geometry::Point &result, std::vector< typename Elem::index_type > &elem, const Core::Geometry::Point &p) const |
double | get_epsilon () const |
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Mesh () | |
Mesh (const Mesh ©) | |
virtual | ~Mesh () |
void | io (Piostream &stream) |
Persistent I/O. More... | |
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Datatype () | |
virtual | ~Datatype () |
Datatype (const Datatype &other) | |
Datatype & | operator= (const Datatype &rhs) |
template<typename T > | |
const T * | as () const |
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virtual | ~Persistent () |
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HasId () | |
IdType | id () const |
Static Public Member Functions | |
static const std::string | type_name (int n=-1) |
Core functionality for getting the name of a templated mesh class. More... | |
static const TypeDescription * | node_type_description () |
static const TypeDescription * | edge_type_description () |
static const TypeDescription * | face_type_description () |
static const TypeDescription * | cell_type_description () |
static const TypeDescription * | elem_type_description () |
static const TypeDescription * | node_index_type_description () |
static const TypeDescription * | face_index_type_description () |
static Persistent * | maker () |
This function returns a maker for Pio. More... | |
static MeshHandle | mesh_maker () |
This function returns a handle for the virtual interface. More... | |
static MeshHandle | image_maker (size_type x, size_type y, const Core::Geometry::Point &min, const Core::Geometry::Point &max) |
This function returns a handle for the virtual interface. More... | |
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static const std::string | type_name (int n=-1) |
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static PersistentTypeIDPtr | find_derived (const std::string &classname, const std::string &basename) |
static bool | is_base_of (const std::string &parent, const std::string &type) |
static void | add_class (const std::string &type, const std::string &parent, Persistent *(*maker)(), Persistent *(*bc_maker1)()=0, Persistent *(*bc_maker2)()=0) |
static void | add_mesh_class (const std::string &type, Persistent *(*maker)(), Persistent *(*bc_maker1)()=0, Persistent *(*bc_maker2)()=0) |
static void | add_field_class (const std::string &type, Persistent *(*maker)(), Persistent *(*bc_maker1)()=0, Persistent *(*bc_maker2)()=0) |
Static Public Attributes | |
static PersistentTypeID | imagemesh_typeid |
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static PersistentTypeID | type_id |
Protected Member Functions | |
void | compute_jacobian () |
Protected Attributes | |
index_type | min_i_ |
the min_typename Node::index_type ( incase this is a subLattice ) More... | |
index_type | min_j_ |
size_type | ni_ |
size_type | nj_ |
Core::Geometry::Transform | transform_ |
the object space extents of a ImageMesh More... | |
Core::Geometry::Vector | normal_ |
Basis | basis_ |
The basis class. More... | |
boost::shared_ptr< VMesh > | vmesh_ |
Virtual mesh. More... | |
double | jacobian_ [9] |
double | inverse_jacobian_ [9] |
double | det_jacobian_ |
double | scaled_jacobian_ |
double | det_inverse_jacobian_ |
Friends | |
template<class MESH > | |
class | VImageMesh |
Make sure the virtual interface has access. More... | |
struct | ImageIndex |
struct | INodeIter |
struct | IFaceIter |
struct | IFaceIndex |
class | ElemData |
Functions for creating the virtual interface Declare the functions that instantiate the virtual interface
These declarations are needed for a combined dynamic compilation as as well as virtual functions solution. Declare that these can be found in a library that is already precompiled. So dynamic compilation will not instantiate them again.
typedef Basis basis_type |
typedef boost::shared_ptr<ImageMesh<Basis> > handle_type |
typedef SCIRun::index_type index_type |
typedef SCIRun::mask_type mask_type |
typedef SCIRun::size_type size_type |
typedef SCIRun::index_type under_type |
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Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
ImageMesh | ( | size_type | x, |
size_type | y, | ||
const Core::Geometry::Point & | min, | ||
const Core::Geometry::Point & | max | ||
) |
Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
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Reimplemented from Mesh.
void begin | ( | typename Node::iterator & | itr | ) | const |
void begin | ( | typename Edge::iterator & | itr | ) | const |
void begin | ( | typename Face::iterator & | itr | ) | const |
void begin | ( | typename Cell::iterator & | ) | const |
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bool clear_synchronization | ( | ) |
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Implements Mesh.
Reimplemented in StructQuadSurfMesh< Basis >.
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Interpolate the derivate of the function, This infact will return the jacobian of the local to global coordinate transformation. This function is mainly intended for the non linear elements
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Get the determinant of the jacobian, which is the local volume of an element and is intended to help with the integration of functions over an element.
Core::Geometry::Vector diagonal | ( | ) | const |
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void end | ( | typename Node::iterator & | itr | ) | const |
void end | ( | typename Edge::iterator & | itr | ) | const |
void end | ( | typename Face::iterator & | itr | ) | const |
void end | ( | typename Cell::iterator & | ) | const |
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This function will find the closest element and the location on that element that is the closest
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This function will find the closest element and the location on that element that is the closest
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bool find_closest_elems | ( | double & | pdist, |
Core::Geometry::Point & | result, | ||
std::vector< typename Elem::index_type > & | elem, | ||
const Core::Geometry::Point & | p | ||
) | const |
This function will return multiple elements if the closest point is located on a node or edge. All bordering elements are returned in that case.
bool find_closest_node | ( | double & | pdist, |
Core::Geometry::Point & | result, | ||
typename Node::index_type & | elem, | ||
const Core::Geometry::Point & | p | ||
) | const |
This function will find the closest element and the location on that element that is the closest
bool find_closest_node | ( | double & | pdist, |
Core::Geometry::Point & | result, | ||
typename Node::index_type & | elem, | ||
const Core::Geometry::Point & | p, | ||
double | maxdist | ||
) | const |
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Reimplemented in StructQuadSurfMesh< Basis >.
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void get_center | ( | Core::Geometry::Point & | result, |
const typename Node::index_type & | idx | ||
) | const |
get the center point (in object space) of an element
void get_center | ( | Core::Geometry::Point & | result, |
typename Edge::index_type | idx | ||
) | const |
void get_center | ( | Core::Geometry::Point & | result, |
const typename Face::index_type & | idx | ||
) | const |
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Get the local coordinates for a certain point within an element This function uses a couple of newton iterations to find the local coordinate of a point
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Wrapper to get the derivative elements from this element.
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Reimplemented in StructQuadSurfMesh< Basis >.
void get_edges | ( | typename Edge::array_type & | array, |
typename Face::index_type | idx | ||
) | const |
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void get_elems | ( | typename Elem::array_type & | result, |
typename Node::index_type | idx | ||
) | const |
get the parent element(s) of the given index
void get_elems | ( | typename Elem::array_type & | result, |
typename Edge::index_type | idx | ||
) | const |
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double get_epsilon | ( | ) | const |
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void get_faces | ( | typename Face::array_type & | arr, |
const Core::Geometry::BBox & | box | ||
) |
return all face_indecies that overlap the BBox in arr.
return all face_indecies that overlap the Core::Geometry::BBox in arr.
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bool get_min | ( | std::vector< index_type > & | array | ) | const |
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get the mesh statistics
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bool get_neighbor | ( | typename Face::index_type & | neighbor, |
typename Face::index_type | from, | ||
typename Edge::index_type | idx | ||
) | const |
void get_neighbors | ( | typename Face::array_type & | array, |
typename Face::index_type | idx | ||
) | const |
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void get_nodes | ( | typename Node::array_type & | array, |
typename Edge::index_type | idx | ||
) | const |
get the child elements of the given index
void get_nodes | ( | typename Node::array_type & | array, |
typename Face::index_type | idx | ||
) | const |
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void get_random_point | ( | Core::Geometry::Point & | p, |
const typename Elem::index_type & | ci, | ||
FieldRNG & | rng | ||
) | const |
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Get the size of an element (length, area, volume)
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Type description, used for finding names of the mesh class for dynamic compilation purposes. Some of this should be obsolete
Implements Mesh.
Reimplemented in StructQuadSurfMesh< Basis >.
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int get_weights | ( | const Core::Geometry::Point & | p, |
typename Node::array_type & | l, | ||
double * | w | ||
) |
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int get_weights | ( | const Core::Geometry::Point & | p, |
typename Face::array_type & | l, | ||
double * | w | ||
) |
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Implements Mesh.
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This function returns a handle for the virtual interface.
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Find the location in the global coordinate system for a local coordinate This function is the opposite of get_coords.
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Get the inverse jacobian of the transformation. This one is needed to translate local gradients into global gradients. Hence it is crucial for calculating gradients of fields, or constructing finite elements.
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Export this class using the old Pio system.
Reimplemented from Persistent.
Reimplemented in StructQuadSurfMesh< Basis >.
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Get the jacobian of the transformation. In case one wants the non inverted version of this matrix. This is currentl here for completeness of the interface
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bool locate | ( | typename Node::index_type & | node, |
const Core::Geometry::Point & | p | ||
) | const |
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bool locate | ( | typename Face::index_type & | elem, |
const Core::Geometry::Point & | p | ||
) | const |
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This function returns a maker for Pio.
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This function returns a handle for the virtual interface.
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Generate the list of points that make up a sufficiently accurate piecewise linear approximation of an edge.
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Generate the list of points that make up a sufficiently accurate piecewise linear approximation of an face.
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Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
Reimplemented in StructQuadSurfMesh< Basis >.
void set_min | ( | std::vector< index_type > | mins | ) |
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set the mesh statistics
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Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
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Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class
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void size | ( | typename Node::size_type & | s | ) | const |
void size | ( | typename Edge::size_type & | s | ) | const |
void size | ( | typename Face::size_type & | s | ) | const |
void size | ( | typename Cell::size_type & | ) | const |
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Reimplemented from Mesh.
Reimplemented in StructQuadSurfMesh< Basis >.
void to_index | ( | typename Node::index_type & | index, |
index_type | i | ||
) | const |
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void to_index | ( | typename Face::index_type & | index, |
index_type | i | ||
) | const |
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Reimplemented in StructQuadSurfMesh< Basis >.
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Reimplemented in StructQuadSurfMesh< Basis >.
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Core functionality for getting the name of a templated mesh class.
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Reimplemented from Mesh.
Reimplemented in StructQuadSurfMesh< Basis >.
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friend |
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friend |
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Make sure the virtual interface has access.
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The basis class.
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These IDs are created as soon as this class will be instantiated The first one is for Pio and the second for the virtual interface These are currently different as they serve different needs. static PersistentTypeID type_idts;
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the min_typename Node::index_type ( incase this is a subLattice )
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the typename Node::index_type space extents of a ImageMesh (min=min_typename Node::index_type, max=min+extents-1)
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the object space extents of a ImageMesh
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Virtual mesh.