#include <PointCloudMesh.h>

Inheritance diagram for PointCloudMesh< Basis >:

Classes
struct	Cell

struct	Edge

class	ElemData

struct	Face

struct	Node
	Index and Iterator types required for Mesh Concept. More...

Public Types
typedef SCIRun::index_type	under_type

typedef SCIRun::index_type	index_type

typedef SCIRun::size_type	size_type

typedef SCIRun::mask_type	mask_type

typedef boost::shared_ptr < PointCloudMesh< Basis > >	handle_type

typedef Basis	basis_type

typedef Node	Elem

typedef Node	DElem

Public Types inherited from Mesh
enum	{ UNKNOWN = 0, STRUCTURED = 1 << 1, UNSTRUCTURED = 1 << 2, REGULAR = 1 << 3, IRREGULAR = 1 << 4 }
	These will become obsolete at some point. More...

enum	{ NONE_E = 0, NODES_E = 1 << 0, EDGES_E = 1 << 1, FACES_E = 1 << 2, CELLS_E = 1 << 3, ELEMS_E = 1 << 4, DELEMS_E = 1 << 5, ENODES_E = 1 << 6, ALL_ELEMENTS_E = NODES_E \| EDGES_E \| FACES_E \| CELLS_E \| ENODES_E \| ELEMS_E \| DELEMS_E, NORMALS_E = 1 << 7, NODE_NEIGHBORS_E = 1 << 8, ELEM_NEIGHBORS_E = 1 << 9, NEIGHBORS_E = NODE_NEIGHBORS_E \| ELEM_NEIGHBORS_E, NODE_LOCATE_E = 1 << 10, ELEM_LOCATE_E = 1 << 11, LOCATE_E = NODE_LOCATE_E \| ELEM_LOCATE_E, EPSILON_E = 1 << 12, BOUNDING_BOX_E = 1 << 12, FIND_CLOSEST_NODE_E = 1 << 13, FIND_CLOSEST_ELEM_E = 1 << 14, FIND_CLOSEST_E = FIND_CLOSEST_NODE_E \| FIND_CLOSEST_ELEM_E }
	Synchronize system. More...

Public Types inherited from Datatype
typedef HasIntegerId::id_type	id_type

Public Types inherited from HasId< IdType, IdGenerator >
typedef IdType	id_type

Public Types inherited from MeshTraits< VMesh >
typedef SCIRun::mask_type	mask_type

typedef SCIRun::index_type	under_type

typedef SCIRun::index_type	index_type

typedef SCIRun::index_type	size_type

typedef std::vector< index_type >	array_type

typedef std::vector< size_type >	dimension_type

typedef boost::shared_ptr < MeshFacade< VMesh > >	MeshFacadeHandle

Public Member Functions
	PointCloudMesh ()
	Construct a new mesh. More...

	PointCloudMesh (const PointCloudMesh &copy)
	Copy a mesh, needed for detaching the mesh from a field. More...

virtual PointCloudMesh *	clone () const

virtual	~PointCloudMesh ()
	Destructor. More...

virtual VMesh *	vmesh ()
	Access point to virtual interface. More...

virtual MeshFacadeHandle	getFacade () const

virtual int	basis_order ()

virtual int	dimensionality () const
	Topological dimension. More...

virtual int	topology_geometry () const

virtual Core::Geometry::BBox	get_bounding_box () const
	Get the bounding box of the field. More...

virtual void	get_canonical_transform (Core::Geometry::Transform &t) const

virtual void	transform (const Core::Geometry::Transform &t)
	Core::Geometry::Transform a field (transform all nodes using this transformation matrix) More...

virtual bool	is_editable () const
	Check whether mesh can be altered by adding nodes or elements. More...

virtual bool	has_normals () const
	Has this mesh normals. More...

virtual bool	synchronize (mask_type sync)

virtual bool	unsynchronize (mask_type sync)

bool	clear_synchronization ()

Basis &	get_basis ()
	Get the basis class. More...

void	begin (typename Node::iterator &) const
	begin/end iterators More...

void	begin (typename Edge::iterator &) const

void	begin (typename Face::iterator &) const

void	begin (typename Cell::iterator &) const

void	end (typename Node::iterator &) const

void	end (typename Edge::iterator &) const

void	end (typename Face::iterator &) const

void	end (typename Cell::iterator &) const

void	size (typename Node::size_type &) const
	Get the iteration sizes. More...

void	size (typename Edge::size_type &) const

void	size (typename Face::size_type &) const

void	size (typename Cell::size_type &) const

void	to_index (typename Node::index_type &index, index_type i) const

void	to_index (typename Edge::index_type &index, index_type i) const

void	to_index (typename Face::index_type &index, index_type i) const

void	to_index (typename Cell::index_type &index, index_type i) const

void	get_nodes (typename Node::array_type &a, typename Node::index_type i) const

void	get_nodes (typename Node::array_type &, typename Edge::index_type) const

void	get_nodes (typename Node::array_type &, typename Face::index_type) const

void	get_nodes (typename Node::array_type &, typename Cell::index_type) const

void	get_edges (typename Edge::array_type &, typename Node::index_type) const

void	get_edges (typename Edge::array_type &, typename Edge::index_type) const

void	get_edges (typename Edge::array_type &, typename Face::index_type) const

void	get_edges (typename Edge::array_type &, typename Cell::index_type) const

void	get_faces (typename Face::array_type &, typename Node::index_type) const

void	get_faces (typename Face::array_type &, typename Edge::index_type) const

void	get_faces (typename Face::array_type &, typename Face::index_type) const

void	get_faces (typename Face::array_type &, typename Cell::index_type) const

void	get_cells (typename Cell::array_type &, typename Node::index_type) const

void	get_cells (typename Cell::array_type &, typename Edge::index_type) const

void	get_cells (typename Cell::array_type &, typename Face::index_type) const

void	get_cells (typename Cell::array_type &, typename Cell::index_type) const

void	get_elems (typename Elem::array_type &result, typename Node::index_type idx) const
	get the parent element(s) of the given index More...

void	get_elems (typename Elem::array_type &, typename Edge::index_type) const

void	get_elems (typename Elem::array_type &, typename Face::index_type) const

void	get_elems (typename Elem::array_type &, typename Cell::index_type) const

void	get_delems (typename DElem::array_type &, typename Node::index_type) const

void	get_delems (typename DElem::array_type &, typename Edge::index_type) const

void	get_delems (typename DElem::array_type &, typename Face::index_type) const

void	get_delems (typename DElem::array_type &, typename Cell::index_type) const

template<class VECTOR >
void	pwl_approx_edge (VECTOR &, typename Elem::index_type, unsigned int, unsigned int) const

template<class VECTOR >
void	pwl_approx_face (VECTOR &, typename Elem::index_type, unsigned int, unsigned int) const

void	get_center (Core::Geometry::Point &p, typename Node::index_type i) const
	get the center point (in object space) of an element More...

void	get_center (Core::Geometry::Point &, typename Edge::index_type) const

void	get_center (Core::Geometry::Point &, typename Face::index_type) const

void	get_center (Core::Geometry::Point &, typename Cell::index_type) const

double	get_size (typename Node::index_type) const
	Get the size of an elemnt (length, area, volume) More...

double	get_size (typename Edge::index_type) const

double	get_size (typename Face::index_type) const

double	get_size (typename Cell::index_type) const

double	get_length (typename Edge::index_type) const

double	get_area (typename Face::index_type) const

double	get_volume (typename Cell::index_type) const

double	get_size (typename Node::array_type &) const

bool	get_neighbor (typename Elem::index_type &, typename Elem::index_type, typename DElem::index_type) const

void	get_neighbors (std::vector< typename Node::index_type > &array, typename Node::index_type) const

bool	get_neighbors (std::vector< typename Elem::index_type > &array, typename Elem::index_type, typename DElem::index_type) const

bool	locate (typename Node::index_type &n, const Core::Geometry::Point &p) const
	Locate a point in a mesh, find which is the closest node. More...

bool	locate (typename Edge::index_type &, const Core::Geometry::Point &) const

bool	locate (typename Face::index_type &, const Core::Geometry::Point &) const

bool	locate (typename Cell::index_type &, const Core::Geometry::Point &) const

template<class ARRAY >
bool	locate (typename Node::index_type &n, ARRAY &coords, const Core::Geometry::Point &p) const

int	get_weights (const Core::Geometry::Point &p, typename Node::array_type &l, double *w)

int	get_weights (const Core::Geometry::Point &, typename Edge::array_type &, double *)

int	get_weights (const Core::Geometry::Point &, typename Face::array_type &, double *)

int	get_weights (const Core::Geometry::Point &, typename Cell::array_type &, double *)

void	get_point (Core::Geometry::Point &p, typename Node::index_type i) const

void	set_point (const Core::Geometry::Point &p, typename Node::index_type i)

void	get_random_point (Core::Geometry::Point &p, const typename Elem::index_type i, FieldRNG &) const

void	get_normal (Core::Geometry::Vector &, typename Node::index_type) const

template<class VECTOR >
void	get_normal (Core::Geometry::Vector &, VECTOR &, typename Elem::index_type, unsigned int) const

Node::index_type	add_node (const Core::Geometry::Point &p)
	use these to build up a new PointCloudField mesh More...

Node::index_type	add_point (const Core::Geometry::Point &p)

template<class ARRAY >
Elem::index_type	add_elem (ARRAY a)

void	node_reserve (size_t s)

void	elem_reserve (size_t s)

void	resize_nodes (size_t s)

void	resize_elems (size_t s)

template<class VECTOR , class INDEX >
bool	get_coords (VECTOR &coords, const Core::Geometry::Point &, INDEX) const

template<class VECTOR , class INDEX >
void	interpolate (Core::Geometry::Point &pt, const VECTOR &, INDEX idx) const

template<class VECTOR1 , class INDEX , class VECTOR2 >
void	derivate (const VECTOR1 &, INDEX, VECTOR2 &J) const

template<class VECTOR , class INDEX >
double	det_jacobian (const VECTOR &coords, INDEX idx) const

template<class VECTOR , class INDEX >
void	jacobian (const VECTOR &coords, INDEX idx, double *J) const

template<class VECTOR , class INDEX >
double	inverse_jacobian (const VECTOR &, INDEX, double *Ji) const

template<class INDEX >
double	scaled_jacobian_metric (INDEX idx) const

template<class INDEX >
double	jacobian_metric (INDEX idx) const

template<class INDEX >
double	inscribed_circumscribed_radius_metric (INDEX idx) const

template<class INDEX >
bool	locate_node (INDEX &node, const Core::Geometry::Point &p) const

template<class INDEX >
bool	locate_elem (INDEX &idx, const Core::Geometry::Point &p) const

template<class ARRAY >
bool	locate_elems (ARRAY &array, const Core::Geometry::BBox &b) const

template<class INDEX >
bool	find_closest_node (double &pdist, Core::Geometry::Point &result, INDEX &node, const Core::Geometry::Point &p) const

template<class INDEX >
bool	find_closest_node (double &pdist, Core::Geometry::Point &result, INDEX &node, const Core::Geometry::Point &p, double maxdist) const
	Closest node and the location. More...

template<class ARRAY >
bool	find_closest_nodes (ARRAY &nodes, const Core::Geometry::Point &p, double maxdist) const

template<class ARRAY1 , class ARRAY2 >
bool	find_closest_nodes (ARRAY1 &distances, ARRAY2 &nodes, const Core::Geometry::Point &p, double maxdist) const

template<class INDEX , class ARRAY >
bool	find_closest_elem (double &pdist, Core::Geometry::Point &result, ARRAY &coords, INDEX &elem, const Core::Geometry::Point &p) const

template<class INDEX , class ARRAY >
bool	find_closest_elem (double &pdist, Core::Geometry::Point &result, ARRAY &coords, INDEX &elem, const Core::Geometry::Point &p, double maxdist) const

template<class INDEX >
bool	find_closest_elem (double &pdist, Core::Geometry::Point &result, INDEX &elem, const Core::Geometry::Point &p) const

template<class ARRAY >
bool	find_closest_elems (double &pdist, Core::Geometry::Point &result, ARRAY &elems, const Core::Geometry::Point &p) const

double	get_epsilon () const

virtual void	io (Piostream &)
	Export this class using the old Pio system. More...

virtual std::string	dynamic_type_name () const

virtual const TypeDescription *	get_type_description () const

Public Member Functions inherited from Mesh
	Mesh ()

	Mesh (const Mesh &copy)

virtual	~Mesh ()

Public Member Functions inherited from Datatype
	Datatype ()

virtual	~Datatype ()

	Datatype (const Datatype &other)

Datatype &	operator= (const Datatype &rhs)

template<typename T >
const T *	as () const

Public Member Functions inherited from Persistent
virtual	~Persistent ()

Public Member Functions inherited from HasId< IdType, IdGenerator >
	HasId ()

IdType	id () const

Static Public Member Functions
static const std::string	type_name (int n=-1)
	Core functionality for getting the name of a templated mesh class. More...

static const TypeDescription *	node_type_description ()

static const TypeDescription *	edge_type_description ()

static const TypeDescription *	face_type_description ()

static const TypeDescription *	cell_type_description ()

static const TypeDescription *	elem_type_description ()

static Persistent *	maker ()
	This function returns a maker for Pio. More...

static MeshHandle	mesh_maker ()
	This function returns a handle for the virtual interface. More...

Static Public Member Functions inherited from Mesh
static const std::string	type_name (int n=-1)

Static Public Member Functions inherited from Persistent
static PersistentTypeIDPtr	find_derived (const std::string &classname, const std::string &basename)

static bool	is_base_of (const std::string &parent, const std::string &type)

static void	add_class (const std::string &type, const std::string &parent, Persistent (maker)(), Persistent (bc_maker1)()=0, Persistent (bc_maker2)()=0)

static void	add_mesh_class (const std::string &type, Persistent (maker)(), Persistent (bc_maker1)()=0, Persistent (bc_maker2)()=0)

static void	add_field_class (const std::string &type, Persistent (maker)(), Persistent (bc_maker1)()=0, Persistent (bc_maker2)()=0)

Static Public Attributes
static PersistentTypeID	pointcloud_typeid
	These IDs are created as soon as this class will be instantiated. More...

Static Public Attributes inherited from Mesh
static PersistentTypeID	type_id

Protected Member Functions
template<class ARRAY , class INDEX >
void	get_nodes_from_elem (ARRAY nodes, INDEX idx)

template<class ARRAY , class INDEX >
void	get_edges_from_elem (ARRAY edges, INDEX idx)

template<class ARRAY , class INDEX >
void	set_nodes_by_elem (ARRAY &array, INDEX idx)

void	compute_grid (Core::Geometry::BBox &bb)

void	compute_epsilon (Core::Geometry::BBox &bb)

void	insert_elem_into_grid (typename Elem::index_type ci)

void	remove_elem_from_grid (typename Elem::index_type ci)

Protected Attributes
std::vector < Core::Geometry::Point >	points_
	the nodes More...

Basis	basis_
	basis fns More...

boost::shared_ptr< SearchGridT < index_type > >	grid_

mask_type	synchronized_
	Record which parts of the mesh are synchronized. More...

Core::Thread::Mutex	synchronize_lock_
	Lock to synchronize between threads. More...

double	epsilon_

double	epsilon2_

boost::shared_ptr< VMesh >	vmesh_
	Virtual interface. More...

Friends
template<class MESH >
class	VPointCloudMesh
	Make sure the virtual interface has access. More...

template<class MESH >
class	VMeshShared

class	ElemData

Detailed Description

template<class Basis>
class SCIRun::PointCloudMesh< Basis >

Functions for creating the virtual interface Declare the functions that instantiate the virtual interface

Declare that these can be found in a library that is already precompiled. So dynamic compilation will not instantiate them again.

Member Typedef Documentation

typedef Basis basis_type

typedef Node DElem

typedef Node Elem

Elem refers to the most complex topological object DElem refers to object just below Elem in the topological hierarchy

typedef boost::shared_ptr<PointCloudMesh<Basis> > handle_type

typedef SCIRun::index_type index_type

typedef SCIRun::mask_type mask_type

typedef SCIRun::size_type size_type

typedef SCIRun::index_type under_type

Constructor & Destructor Documentation

PointCloudMesh ( )

Construct a new mesh.

Initialize the virtual interface when the mesh is created

PointCloudMesh ( const PointCloudMesh< Basis > & copy )

Copy a mesh, needed for detaching the mesh from a field.

We need to lock before we can copy these as these structures are generate dynamically when they are needed.

Create a new virtual interface for this copy all pointers have changed hence create a new virtual interface class

~PointCloudMesh ( )

virtual

Destructor.

Member Function Documentation

Elem::index_type add_elem ( ARRAY a )

inline

Node::index_type add_node ( const Core::Geometry::Point & p )

inline

use these to build up a new PointCloudField mesh

PointCloudMesh< Basis >::Node::index_type add_point ( const Core::Geometry::Point & p )

virtual int basis_order ( )

inlinevirtual

This one should go at some point, should be reroute throught the virtual interface

Reimplemented from Mesh.

void begin ( typename Node::iterator & itr ) const

begin/end iterators

void begin ( typename Edge::iterator & ) const

void begin ( typename Face::iterator & ) const

void begin ( typename Cell::iterator & ) const

const TypeDescription * cell_type_description ( )

static

bool clear_synchronization ( )

virtual PointCloudMesh* clone ( ) const

inlinevirtual

Clone function for detaching the mesh and automatically generating a new version if needed.

Implements Mesh.

void compute_epsilon ( Core::Geometry::BBox & bb )

protected

void compute_grid ( Core::Geometry::BBox & bb )

protected

void derivate	(	const VECTOR1 &	,
		INDEX	,
		VECTOR2 &	J
	)		const

inline

Interpolate the derivate of the function, This infact will return the jacobian of the local to global coordinate transformation. This function is mainly intended for the non linear elements

double det_jacobian	(	const VECTOR &	coords,
		INDEX	idx
	)		const

inline

Get the determinant of the jacobian, which is the local volume of an element and is intended to help with the integration of functions over an element.

virtual int dimensionality ( ) const

inlinevirtual

Topological dimension.

virtual std::string dynamic_type_name ( ) const

inlinevirtual

const TypeDescription * edge_type_description ( )

static

void elem_reserve ( size_t s )

inline

static const TypeDescription* elem_type_description ( )

inlinestatic

void end ( typename Node::iterator & itr ) const

void end ( typename Edge::iterator & ) const

void end ( typename Face::iterator & ) const

void end ( typename Cell::iterator & ) const

const TypeDescription * face_type_description ( )

static

bool find_closest_elem	(	double &	pdist,
		Core::Geometry::Point &	result,
		ARRAY &	coords,
		INDEX &	elem,
		const Core::Geometry::Point &	p
	)		const

inline

bool find_closest_elem	(	double &	pdist,
		Core::Geometry::Point &	result,
		ARRAY &	coords,
		INDEX &	elem,
		const Core::Geometry::Point &	p,
		double	maxdist
	)		const

inline

If there are no nodes we cannot find the closest one

We need to do a full shell without any elements that are closer to make sure there no closer elements in neighboring searchgrid cells

If we are closer than eps^2 we found a node close enough

bool find_closest_elem	(	double &	pdist,
		Core::Geometry::Point &	result,
		INDEX &	elem,
		const Core::Geometry::Point &	p
	)		const

inline

bool find_closest_elems	(	double &	pdist,
		Core::Geometry::Point &	result,
		ARRAY &	elems,
		const Core::Geometry::Point &	p
	)		const

inline

This looks incorrect - but it is correct We need to do a full shell without any elements that are closer to make sure there no closer elements

bool find_closest_node	(	double &	pdist,
		Core::Geometry::Point &	result,
		INDEX &	node,
		const Core::Geometry::Point &	p
	)		const

inline

bool find_closest_node	(	double &	pdist,
		Core::Geometry::Point &	result,
		INDEX &	node,
		const Core::Geometry::Point &	p,
		double	maxdist
	)		const

inline

Closest node and the location.

If there are no nodes we cannot find the closest one

This looks incorrect - but it is correct We need to do a full shell without any elements that are closer to make sure there no closer elements in neighboring searchgrid cells

If we are closer than eps^2 we found a node close enough

bool find_closest_nodes	(	ARRAY &	nodes,
		const Core::Geometry::Point &	p,
		double	maxdist
	)		const

inline

bool find_closest_nodes	(	ARRAY1 &	distances,
		ARRAY2 &	nodes,
		const Core::Geometry::Point &	p,
		double	maxdist
	)		const

inline

double get_area ( typename Face::index_type ) const

inline

Basis& get_basis ( )

inline

Get the basis class.

Core::Geometry::BBox get_bounding_box ( ) const

virtual

Get the bounding box of the field.

void get_canonical_transform ( Core::Geometry::Transform & t ) const

virtual

Return the transformation that takes a 0-1 space bounding box to the current bounding box of this mesh.

void get_cells	(	typename Cell::array_type &	,
		typename Node::index_type
	)		const

inline

void get_cells	(	typename Cell::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_cells	(	typename Cell::array_type &	,
		typename Face::index_type
	)		const

inline

void get_cells	(	typename Cell::array_type &	,
		typename Cell::index_type
	)		const

inline

void get_center	(	Core::Geometry::Point &	p,
		typename Node::index_type	i
	)		const

inline

get the center point (in object space) of an element

void get_center	(	Core::Geometry::Point &	,
		typename Edge::index_type
	)		const

inline

void get_center	(	Core::Geometry::Point &	,
		typename Face::index_type
	)		const

inline

void get_center	(	Core::Geometry::Point &	,
		typename Cell::index_type
	)		const

inline

bool get_coords	(	VECTOR &	coords,
		const Core::Geometry::Point &	,
		INDEX
	)		const

inline

THESE FUNCTIONS ARE DEFINED INSIDE THE CLASS AS THESE ARE TEMPLATED FUNCTIONS INSIDE A TEMPLATED CLASS. THIS WAY OF DEFINING THE FUNCTIONS IS SUPPORTED BY MOST COMPILERS Get the local coordinates for a certain point within an element This function uses a couple of newton iterations to find the local coordinate of a point

void get_delems	(	typename DElem::array_type &	,
		typename Node::index_type
	)		const

inline

void get_delems	(	typename DElem::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_delems	(	typename DElem::array_type &	,
		typename Face::index_type
	)		const

inline

void get_delems	(	typename DElem::array_type &	,
		typename Cell::index_type
	)		const

inline

void get_edges	(	typename Edge::array_type &	,
		typename Node::index_type
	)		const

inline

void get_edges	(	typename Edge::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_edges	(	typename Edge::array_type &	,
		typename Face::index_type
	)		const

inline

void get_edges	(	typename Edge::array_type &	,
		typename Cell::index_type
	)		const

inline

void get_edges_from_elem	(	ARRAY	edges,
		INDEX	idx
	)

inlineprotected

void get_elems	(	typename Elem::array_type &	result,
		typename Node::index_type	idx
	)		const

inline

get the parent element(s) of the given index

void get_elems	(	typename Elem::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_elems	(	typename Elem::array_type &	,
		typename Face::index_type
	)		const

inline

void get_elems	(	typename Elem::array_type &	,
		typename Cell::index_type
	)		const

inline

double get_epsilon ( ) const

inline

void get_faces	(	typename Face::array_type &	,
		typename Node::index_type
	)		const

inline

void get_faces	(	typename Face::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_faces	(	typename Face::array_type &	,
		typename Face::index_type
	)		const

inline

void get_faces	(	typename Face::array_type &	,
		typename Cell::index_type
	)		const

inline

double get_length ( typename Edge::index_type ) const

inline

bool get_neighbor	(	typename Elem::index_type &	,
		typename Elem::index_type	,
		typename DElem::index_type
	)		const

inline

Get neighbors of an element or a node THIS ONE IS FLAWED AS IN 3D SPACE A NODE CAN BE CONNECTED TO MANY ELEMENTS

void get_neighbors	(	std::vector< typename Node::index_type > &	array,
		typename Node::index_type
	)		const

inline

bool get_neighbors	(	std::vector< typename Elem::index_type > &	array,
		typename Elem::index_type	,
		typename DElem::index_type
	)		const

inline

void get_nodes	(	typename Node::array_type &	a,
		typename Node::index_type	i
	)		const

inline

void get_nodes	(	typename Node::array_type &	,
		typename Edge::index_type
	)		const

inline

void get_nodes	(	typename Node::array_type &	,
		typename Face::index_type
	)		const

inline

void get_nodes	(	typename Node::array_type &	,
		typename Cell::index_type
	)		const

inline

void get_nodes_from_elem	(	ARRAY	nodes,
		INDEX	idx
	)

inlineprotected

void get_normal	(	Core::Geometry::Vector &	,
		typename Node::index_type
	)		const

inline

void get_normal	(	Core::Geometry::Vector &	,
		VECTOR &	,
		typename Elem::index_type	,
		unsigned	int
	)		const

inline

void get_point	(	Core::Geometry::Point &	p,
		typename Node::index_type	i
	)		const

inline

void get_random_point	(	Core::Geometry::Point &	p,
		const typename Elem::index_type	i,
		FieldRNG &
	)		const

inline

double get_size ( typename Node::index_type ) const

inline

Get the size of an elemnt (length, area, volume)

double get_size ( typename Edge::index_type ) const

inline

double get_size ( typename Face::index_type ) const

inline

double get_size ( typename Cell::index_type ) const

inline

double get_size ( typename Node::array_type & ) const

inline

const TypeDescription * get_type_description ( ) const

virtual

Type description, used for finding names of the mesh class for dynamic compilation purposes. Some of this should be obsolete

Implements Mesh.

double get_volume ( typename Cell::index_type ) const

inline

int get_weights	(	const Core::Geometry::Point &	p,
		typename Node::array_type &	l,
		double *	w
	)

These should become obsolete soon, they do not follow the concept of the basis functions....

int get_weights	(	const Core::Geometry::Point &	,
		typename Edge::array_type &	,
		double *
	)

inline

int get_weights	(	const Core::Geometry::Point &	,
		typename Face::array_type &	,
		double *
	)

inline

int get_weights	(	const Core::Geometry::Point &	,
		typename Cell::array_type &	,
		double *
	)

inline

virtual MeshFacadeHandle getFacade ( ) const

inlinevirtual

Implements Mesh.

virtual bool has_normals ( ) const

inlinevirtual

Has this mesh normals.

double inscribed_circumscribed_radius_metric ( INDEX idx ) const

inline

void insert_elem_into_grid ( typename Elem::index_type ci )

protected

Todo:: : This can crash if you insert a new cell outside of the grid.

void interpolate	(	Core::Geometry::Point &	pt,
		const VECTOR &	,
		INDEX	idx
	)		const

inline

Find the location in the global coordinate system for a local coordinate This function is the opposite of get_coords.

double inverse_jacobian	(	const VECTOR &	,
		INDEX	,
		double *	Ji
	)		const

inline

Get the inverse jacobian of the transformation. This one is needed to translate local gradients into global gradients. Hence it is crucial for calculating gradients of fields, or constructing finite elements.

void io ( Piostream & stream )

virtual

Export this class using the old Pio system.

Reimplemented from Mesh.

virtual bool is_editable ( ) const

inlinevirtual

Check whether mesh can be altered by adding nodes or elements.

void jacobian	(	const VECTOR &	coords,
		INDEX	idx,
		double *	J
	)		const

inline

Get the jacobian of the transformation. In case one wants the non inverted version of this matrix. This is currentl here for completeness of the interface

double jacobian_metric ( INDEX idx ) const

inline

bool locate	(	typename Node::index_type &	n,
		const Core::Geometry::Point &	p
	)		const

inline

Locate a point in a mesh, find which is the closest node.

bool locate	(	typename Edge::index_type &	,
		const Core::Geometry::Point &
	)		const

inline

bool locate	(	typename Face::index_type &	,
		const Core::Geometry::Point &
	)		const

inline

bool locate	(	typename Cell::index_type &	,
		const Core::Geometry::Point &
	)		const

inline

bool locate	(	typename Node::index_type &	n,
		ARRAY &	coords,
		const Core::Geometry::Point &	p
	)		const

inline

bool locate_elem	(	INDEX &	idx,
		const Core::Geometry::Point &	p
	)		const

inline

Find whether we are inside the element If we find an element we return true

Check whether the estimate given in idx is the point we are looking for

bool locate_elems	(	ARRAY &	array,
		const Core::Geometry::BBox &	b
	)		const

inline

bool locate_node	(	INDEX &	node,
		const Core::Geometry::Point &	p
	)		const

inline

Find closest node Loop over all nodes to see which is the closest

If there are no nodes, we cannot find a closest one

Check accuracity of first guess if we have any

Estimate is close enough and thence continue as we found the closest point within an epsilon uncertainty

We need to do a full shell without any elements that are closer to make sure there no closer elements in neighboring searchgrid cells

static Persistent* maker ( )

inlinestatic

This function returns a maker for Pio.

static MeshHandle mesh_maker ( )

inlinestatic

This function returns a handle for the virtual interface.

void node_reserve ( size_t s )

inline

const TypeDescription * node_type_description ( )

static

void pwl_approx_edge	(	VECTOR &	,
		typename Elem::index_type	,
		unsigned	int,
		unsigned	int
	)		const

inline

Generate the list of points that make up a sufficiently accurate piecewise linear approximation of an edge.

void pwl_approx_face	(	VECTOR &	,
		typename Elem::index_type	,
		unsigned	int,
		unsigned	int
	)		const

inline

void remove_elem_from_grid ( typename Elem::index_type ci )

protected

void resize_elems ( size_t s )

inline

void resize_nodes ( size_t s )

inline

double scaled_jacobian_metric ( INDEX idx ) const

inline

void set_nodes_by_elem	(	ARRAY &	array,
		INDEX	idx
	)

inlineprotected

void set_point	(	const Core::Geometry::Point &	p,
		typename Node::index_type	i
	)

inline

void size ( typename Node::size_type & s ) const

Get the iteration sizes.

void size ( typename Edge::size_type & ) const

void size ( typename Face::size_type & ) const

void size ( typename Cell::size_type & ) const

bool synchronize ( mask_type sync )

virtual

Compute tables for doing topology, these need to be synchronized before doing a lot of operations.

These computations share the evalution of the bounding box

Compute the epsilon for geometrical closeness comparisons Mainly used by the grid lookup tables

Table for finding nodes in space

Reimplemented from Mesh.

void to_index	(	typename Node::index_type &	index,
		index_type	i
	)		const

inline

These are here to convert indices to unsigned int counters. Some how the decision was made to use multi dimensional indices in some fields, these functions should deal with different pointer types. Use the virtual interface to avoid all this non sense.

void to_index	(	typename Edge::index_type &	index,
		index_type	i
	)		const

inline

void to_index	(	typename Face::index_type &	index,
		index_type	i
	)		const

inline

void to_index	(	typename Cell::index_type &	index,
		index_type	i
	)		const

inline

virtual int topology_geometry ( ) const

inlinevirtual

What kind of mesh is this structured = no connectivity data regular = no node location data

void transform ( const Core::Geometry::Transform & t )

virtual

Core::Geometry::Transform a field (transform all nodes using this transformation matrix)

const std::string type_name ( int n = -1 )

static

Core functionality for getting the name of a templated mesh class.

bool unsynchronize ( mask_type sync )

virtual

Reimplemented from Mesh.

virtual VMesh* vmesh ( )

inlinevirtual

Access point to virtual interface.

Reimplemented from Mesh.

Friends And Related Function Documentation

friend class ElemData

friend

Somehow the information of how to interpolate inside an element ended up in a separate class, as they need to share information this construction was created to transfer data. Hopefully in the future this class will disappear again.

friend class VMeshShared

friend

friend class VPointCloudMesh

friend

Make sure the virtual interface has access.

Member Data Documentation

Basis basis_

protected

basis fns

double epsilon2_

protected

double epsilon_

protected

boost::shared_ptr<SearchGridT<index_type> > grid_

protected

PersistentTypeID pointcloud_typeid

static

These IDs are created as soon as this class will be instantiated.

std::vector<Core::Geometry::Point> points_

protected

the nodes

Core::Thread::Mutex synchronize_lock_

protected

Lock to synchronize between threads.

mask_type synchronized_

protected

Record which parts of the mesh are synchronized.

boost::shared_ptr<VMesh> vmesh_

protected

Virtual interface.

The documentation for this class was generated from the following file:

Core/Datatypes/Legacy/Field/PointCloudMesh.h

Classes

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Friends

Detailed Description

template<class Basis> class SCIRun::PointCloudMesh< Basis >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation

template<class Basis>
class SCIRun::PointCloudMesh< Basis >