Directory Packages/BioPSE/Dataflow/Modules/Forward/

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callahan 2006-07-14 16:20 Rev.: 34792

Use get_input_handle and send_output_handle for ports.

0 lines of code changed in 46 files:

• Packages/BioPSE/Dataflow/Modules/Forward: AnisoSphereModel.cc (changed), ApplyFEMCurrentSource.cc (changed), ApplyFEMElectrodeSource.cc (changed), ApplyFEMVoltageSource.cc (changed), ComputeCurrent.cc (new), ConfigureElectrode.cc (changed), ConfigureWireElectrode.cc (changed), CreateDisAnisoSpheres.cc (new), DipoleInAnisoSpheres.cc (new), DipoleInSphere.cc (new), EITAnalyticSolution.cc (new), ElectrodeManager.cc (new), ForwardMagneticField.cc (new), IndicesToTensors.cc (new), InsertElectrodes.cc (new), InsertVoltageSource.cc (new), IntegrateCurrent.cc (changed), SetEITGround.cc (new), SetupBEMatrix.cc (changed), SetupEITMatrix.cc (changed), SetupFEMatrix.cc (changed), TensorsToIndices.cc (new), TrigCurrentPattern.cc (new)

callahan 2006-07-12 17:13 Rev.: 34751

Check in basic for BEMTransferSrcToInf module.

253 lines of code changed in 4 files:

• Packages/BioPSE/Dataflow/Modules/Forward: BEMTransferSrcToInf.cc (new 123), BEMTransferSrcToInf.h (new 130), sub.mk (new)

callahan 2006-05-18 11:01 Rev.: 34275

Fix compiler warnings.

2 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: SetupEITMatrix.cc (+2 -2)

callahan 2006-05-17 16:10 Rev.: 34270

Fix compiler warnings.

1 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: SetupBEMatrix.cc (+1 -1)

sachse 2006-05-05 11:35 Rev.: 34135

bug fix

0 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: SetupFEMatrix.h (new)

dmw 2006-05-02 14:40 Rev.: 34095

- Make ApplyFEMCurrentSource module work with source/sink configuration again. - No longer split the output Matrix in build-fem-elem-leadfield network

5 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMCurrentSource.cc (+5 -4)

sbabaeiz 2006-04-19 16:49 Rev.: 33927

Solved the forward problem of EIT

529 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: SetupEITMatrix.cc (+418), SetupEITMatrix.h (new 111)

sbabaeiz 2006-04-19 14:23 Rev.: 33921

adding SetupEITMatrix which solves the forward problem of EIT

2 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: sub.mk (+2 -1)

dav 2006-04-10 11:30 Rev.: 33815

Dataflow/Modules/Render/Painter.h
Dataflow/Modules/Render/Painter.cc

Fixed compiler warnings.

Dataflow/Modules/String/SprintfMatrix.cc
Packages/BioPSE/Dataflow/Modules/Forward/ApplyFEMVoltageSource.cc
Packages/BioPSE/Dataflow/Modules/Forward/EITAnalyticSolution.cc
Packages/BioPSE/Dataflow/Modules/Inverse/Tikhonov.cc
Packages/BioPSE/Dataflow/Modules/Inverse/DipoleSearch.cc

Initialized variables that could be used uninitialized. (Not sure if
these are the right defaults, but at least they will be consistent.)


Packages/BioPSE/Dataflow/Modules/Forward/SetupBEMatrix.cc

Changed 'filed' to 'field'... I think it was a typo.

Packages/rtrt/Core/SketchMaterial.h
Packages/rtrt/StandAlone/scenes/sub.mk

SketchMaterial no longer compiles with the newest Teem. It was
originally created by James Bigler to work around thread safety/memory
issues in Teem. He used internal Teem functions/variables to make
things work. With the updates to Teem, the SketchMaterial will
probably need to be completely rewritten. It is only used in one
scene right now, so I am turning it off. (Note, there are a few #if
0's in the SketchMaterial.h file right now as I was trying to get it
to compile, but it doesn't make sense to turn everything off and leave
the file, so I'm removing it from the sub.mk.

Packages/rtrt/StandAlone/tex-utils/pnn-vq.cc

Fixed (strict) compilation error. (Must use the Class, not an
instance of the Class.)

Packages/rtrt/StandAlone/tex-utils/pca-error.cc

Use the new Teem '_nva' version of the function.

8 lines of code changed in 3 files:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMVoltageSource.cc (+1 -1), EITAnalyticSolution.cc (+1 -1), SetupBEMatrix.cc (+6 -6)

dav 2006-03-22 21:17 Rev.: 33600

Two things coming on it commit:

1) Dataflow/Ports was moved into Dataflow/Network/Ports

- Fixed the sub.mk files to not use libDataflow_Ports as it is now part of
libDataflow_Network. Cleaned many of the sub.mk files up so that
libraries were only listed once.

- I've only tested these changes on the main Packages... I visually
inspected the others, don't know for sure if I got everything.

2) Clean up of Uintah problems from the large commit Marty made earlier

- continue to use getID() for patches.

- another commit is coming shortly to continue the fixes for Uintah

70 lines of code changed in 27 files:

• Packages/BioPSE/Dataflow/Modules/Forward: AnisoSphereModel.cc (+2 -2), ApplyFEMCurrentSource.cc (+2 -2), ApplyFEMElectrodeSource.cc (+2 -2), ApplyFEMVoltageSource.h (+2 -2), ComputeCurrent.cc (+1 -1), ConfigureElectrode.cc (+1 -1), ConfigureWireElectrode.cc (+1 -1), CreateDisAnisoSpheres.cc (+2 -2), DipoleInAnisoSpheres.cc (+2 -2), DipoleInSphere.cc (+2 -2), EITAnalyticSolution.cc (+2 -2), ElectrodeManager.cc (+2 -2), ForwardMagneticField.cc (+1 -1), ForwardMagneticField.h (new), IndicesToTensors.cc (+1 -1), InsertElectrodes.cc (+1 -1), InsertVoltageSource.cc (+1 -1), IntegrateCurrent.cc (+1 -1), SetEITGround.cc (+2 -2), SetupBEMatrix.h (new), SetupFEMatrix.cc (+2 -2), TensorsToIndices.cc (+1 -1), TrigCurrentPattern.cc (+1 -1), sub.mk (+35 -26)

mjc 2006-03-22 16:42 Rev.: 33591

add with-tetgen option to configure, Make Module.h conform to the coding standard, and all the massive fallout from renaming variables and slots in that class

14 lines of code changed in 7 files:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMCurrentSource.h (+2 -2), ApplyFEMElectrodeSource.cc (+2 -2), DipoleInSphere.cc (+3 -3), EITAnalyticSolution.cc (+1 -1), ElectrodeManager.cc (+4 -4), TrigCurrentPattern.cc (+2 -2)

mjc 2006-02-22 09:31 Rev.: 33324

formatting changes

61 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMVoltageSource.h (+61 -57)

sachse 2006-02-18 18:37 Rev.: 33312

Dynamic compilation added, generalization of dipole

431 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMCurrentSource.cc (+96 -654), ApplyFEMCurrentSource.h (+335)

dav 2006-02-16 19:25 Rev.: 33293

Fixed typo so that compilation would pass... Thanks for helping me pad
my commit stats. ;-)

1 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: ForwardMagneticField.h (+1 -1)

mdavis 2006-02-16 18:00 Rev.: 33287

Cleanup ProgressReporter class. Remvoed un-needed ProgressReporter::update_progress(int, int) method, and replaced w/ call to ProgressReporter(double) method. Removed double Module::progress; and use base class protected double ProgressReporter::progress_percent_; instead

1 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: ForwardMagneticField.h (+1 -1)

sachse 2006-02-10 15:03

Generalization

221 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMVoltageSource.cc (+89 -124), ApplyFEMVoltageSource.h (+132)

dmw 2006-02-09 20:13 Rev.: 33221

- Add missing library dependency to link line (fixes build on OSX)

1 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: sub.mk (+1)

sbabaeiz 2006-02-09 12:53 Rev.: 33214

Instead of adding the module I had developed for Eric Voth to solve the BEM-ESI problem to SCIRun, I modified the existing SetupBEMatrix.cc, so now it works for both BEM-ECG and BEM-ESI problems.

454 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: SetupBEMatrix.cc (+452 -3), SetupBEMatrix.h (+2 -1225)

worthen 2006-01-30 13:35 Rev.: 33106

Windows Port. Big changes: new share.h includes and SHARE macros. Change use of hash_map to be compatible with windows. Use of gl extensions

5 lines of code changed in 2 files:

• Packages/BioPSE/Dataflow/Modules/Forward: ForwardMagneticField.h (+5 -1), sub.mk (-1)

callahan 2006-01-23 15:59 Rev.: 33063

Remove unused get_gradient_basis function from some TetVolMesh. This should be done through the basis now. Move the implementation to the only place it is still used in BioPSE/Forward/ApplyFEMCurrentSource.

62 lines of code changed in 1 file:

• Packages/BioPSE/Dataflow/Modules/Forward: ApplyFEMCurrentSource.cc (+62 -1)

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