March 2010 Commit Log

Number of Commits:
101
Number of Active Developers:
10
harman 2010-03-30 14:29 Rev.: 45492

updated prototype for findNeighboringPatches()

0 lines of code changed in 2 files:

harman 2010-03-30 14:22 Rev.: 45491

-added SCI_DEBUG variable RELOCATE_DBG

Relocate.cc
sendset -> send_pset
relocate()
- now using the function findNeighboringPatches()to find all neighboring patches
on the current level the adjacent fine and coarse levels.


61 lines of code changed in 2 files:

jmschrei 2010-03-30 13:45 Rev.: 45490

Fixed serialized reads so the first process waits for the last after its first read, and added code to serialize reads for particle data. Added more explicit #define option for serialized reads, which is disabled by default since they are slower than parallel reads. Also removed some unused variables, and other minor misc cleanups.

79 lines of code changed in 2 files:

jas 2010-03-30 13:29 Rev.: 45489

Remove the dqmom_test_2c temporarily.

2 lines of code changed in 1 file:

jmschrei 2010-03-30 13:06 Rev.: 45488

replace NaNs with large negative numbers for particle variables

6 lines of code changed in 1 file:

jas 2010-03-30 10:32 Rev.: 45487

Add dqmom tests to arches.

2 lines of code changed in 1 file:

jmschrei 2010-03-29 15:47 Rev.: 45486

Replace NaNs with large negative numbers so they are apparent in visit plots

6 lines of code changed in 1 file:

jpedel 2010-03-29 15:03 Rev.: 45485

Adding Turbulence Generator for Inflow Inlet

240 lines of code changed in 4 files:

guilkey 2010-03-27 15:25 Rev.: 45484

Remove require and get for unused modelVol_src.

2 lines of code changed in 1 file:

guilkey 2010-03-27 15:23 Rev.: 45483

Include multiplication by volume fraction so that mass and friends are added
proportionally to what is already there.

Comment out the volume source. Injecting volume into the cell causes the
pressure to not behave as desired.

7 lines of code changed in 1 file:

harman 2010-03-26 16:45 Rev.: 45482

fineNeighboringPatches()
- New logic for finding adjacent fine level neighbor patches
- find all finePatches
Loop over all finePatches
Loop over all CFI faces
cl = mapCellToCoarser(CFI_iter.lo)
ch = mapCellToCoarser(CFI_iter.hi)

if(patch->containsCell(cl or ch)
add fine patch as neighboring patch
end
endloop
endloop

12 lines of code changed in 1 file:

harman 2010-03-26 15:40 Rev.: 45481

- eliminated some DebugStreams

- New InterpolateParticlesToGrid, #if 0 the old one.

- added pDeformationMeasure_preReloc to interpolateToParticlesAndUpdate

-turned off debugging output

184 lines of code changed in 1 file:

harman 2010-03-26 15:33 Rev.: 45479

Added: findNeighboringPatches()
- This finds all neighboring patches on the current levels and on the adjacent
fine and coarse levels. There's a bug in the fine level neighbor code.

133 lines of code changed in 2 files:

guilkey 2010-03-26 14:37 Rev.: 45478

Adding a comment

2 lines of code changed in 1 file:

guilkey 2010-03-26 13:44 Rev.: 45476

Add optional start time and final time for this model.

51 lines of code changed in 3 files:

harman 2010-03-26 10:33 Rev.: 45475

Level::getPatchFromPoint()
Now passing in bool includeExtraCells. If set to false then ignore
extraCells in query.

Relocate.cc
Relocate()
- no longer doing a linear search over neighboring patches, replaced with
toPatch = level->getPatchFromPoint()
- eliminated last else{} in the main conditional tree.

29 lines of code changed in 4 files:

harman 2010-03-26 10:11 Rev.: 45474

formating
Added comment.

25 lines of code changed in 2 files:

harman 2010-03-26 10:08 Rev.: 45473

formatting

13 lines of code changed in 1 file:

harman 2010-03-26 10:05 Rev.: 45472

Added diagnostic task totalParticleCount()
This counts the total number of particles in the domain.
Use:
<save label="particleCount"/>
to dump out the dat file.

Currently not being scheduled.


55 lines of code changed in 2 files:

harman 2010-03-25 17:04 Rev.: 45471

tabs

566 lines of code changed in 31 files:

harman 2010-03-25 16:09

tabs

496 lines of code changed in 84 files:

jeff788 2010-03-25 11:50 Rev.: 45468

added missing require statement for the deformation gradient in FractureParametersCalculation.cc

1 lines of code changed in 1 file:

harman 2010-03-25 10:57 Rev.: 45467

In diagnostic message xdiff -> xxdiff

0 lines of code changed in 2 files:

harman 2010-03-25 10:29 Rev.: 45466

revert previous commit. RT fails on the explode2D_amr test.

25 lines of code changed in 1 file:

harman 2010-03-24 15:53 Rev.: 45465

Relocate()
- no longer doing a linear search over neighboring patches, replaced with
toPatch->level->getPatchFromPoint()
- eliminated last else{} in the main conditional tree.

10 lines of code changed in 1 file:

jeff788 2010-03-24 12:32 Rev.: 45464

fixed another bug in ImpMPM.cc

4 lines of code changed in 1 file:

jas 2010-03-23 23:54 Rev.: 45463

Fix compiler warnings . . . comment out unused variables.

11 lines of code changed in 2 files:

jeff788 2010-03-23 16:59 Rev.: 45462

fixed bug in ImpMPM.cc

5 lines of code changed in 1 file:

jeff788 2010-03-23 16:40 Rev.: 45461

changed a few lines in the cpdi interpolator to improve speed

113 lines of code changed in 1 file:

jeff788 2010-03-23 16:29 Rev.: 45460

reverted the uda reader files to the previous version. These files were inadvertently changed in revision 45458

14 lines of code changed in 5 files:

harman 2010-03-23 16:13 Rev.: 45459

made #if BRYAN_SELECT_CODE permanent.

5 lines of code changed in 1 file:

jeff788 2010-03-23 16:00 Rev.: 45458

added the cpdi interpolator

1032 lines of code changed in 66 files:

luitjens 2010-03-23 12:37 Rev.: 45457

Close the output file to ensure that the data is flushed.

3 lines of code changed in 1 file:

jthornoc 2010-03-23 10:23 Rev.: 45456

Left a debugging cout in the code.

0 lines of code changed in 1 file:

jthornoc 2010-03-22 16:42 Rev.: 45455

Bala's velocity model is now performed component-wise rather than on the magnitude.

50 lines of code changed in 1 file:

luitjens 2010-03-22 12:03 Rev.: 45454

Missed a file in my last commit.

1 lines of code changed in 1 file:

luitjens 2010-03-22 11:57 Rev.: 45453

Renamed containsPoint->containsPointIncludingExtraCells
Renamed containsPointInRealCells->containsPoint

Updated getPatchFromPoint to use the BVH. This changes the complexity from O(P)->O(log P)
Added getPatchFromIndex which is the same as getPatchFromPoint but takes a cell or node index O(log P)

updated containsPoint/containsCell functions to use getPatchFrom*. Making their complexity O(log P).


33 lines of code changed in 4 files:

jpeterson 2010-03-22 11:40 Rev.: 45452

Mirror previous changes to Simple Burn in DDT0 Model

31 lines of code changed in 1 file:

luitjens 2010-03-22 10:57 Rev.: 45451

Updated getPatchFromPoint to use the bvh. This changes the query from O(P) O(log P).

12 lines of code changed in 2 files:

luitjens 2010-03-22 10:08 Rev.: 45450

Create the tree to include extra cells. When querying use the includeExtraCells flag to choose whether or not you want to include extraCells (default is no).

32 lines of code changed in 10 files:

harman 2010-03-19 16:29 Rev.: 45449

Relocate()
- from -> fromProc
- added more comments

55 lines of code changed in 1 file:

luitjens 2010-03-19 09:20 Rev.: 45448

Fixed a bug which would caused some invalid problem setup exceptions.

0 lines of code changed in 2 files:

guilkey 2010-03-18 18:43 Rev.: 45447

Fix a bug such that I don't try to create cohesive zones that are outside of
the computational domain.

4 lines of code changed in 1 file:

jpeterson 2010-03-18 17:07 Rev.: 45446

Replaced Simple Burn's burning criteria with that of Steady Burn's such that it checks temperatures of all substantial cell materials, not only those of the reactant and product.

32 lines of code changed in 1 file:

luitjens 2010-03-18 15:07 Rev.: 45445

Compute spatial extents on the other finalize level call.

Updated findCellRange/findNodeRange queries to compute the ranges based on the spatial extents.

This changes these queries for O(P) to O(1) and should give a huge speed increase to refineCoarseFineInterface and some other parts of the code. Especially when using large numbers of patches.


30 lines of code changed in 1 file:

harman 2010-03-18 13:07 Rev.: 45444

Treading very lightly.


Relocate()
- added comments in relocate particles decision tree.
Variable name changes for clarity.
PP: previous particles
- prevToRefinePatch -> PP_ToPatch_FL (fine Level)
- prevToCoarsenPatch -> PP_ToPatch_CL ( coarse Level)
- prevToPatch -> PP_ToPatch

-newParts -> newParticles_map

66 lines of code changed in 1 file:

jmschrei 2010-03-17 17:36 Rev.: 45441

Updated visit meshes for face centered data so they are more accurate with pseudocolor plots

57 lines of code changed in 1 file:

jpeterson 2010-03-17 15:25 Rev.: 45440

Fixed material references for reactant specific flags.

4 lines of code changed in 1 file:

harman 2010-03-17 13:28 Rev.: 45439

exit if the environmental variable GOLD_STANDARD has not been set.

1 lines of code changed in 1 file:

luitjens 2010-03-17 11:50 Rev.: 45438

Added a couple of updates to make the script more compataible.

1) Use readlink instead of which to ensure that the full path of the script is returned
instead of the symbolic path. The symbolic path is wrong after changing to the uda directory.

2) Don't open a new xterm, instead just launch the editor in the same window. This removes the
need for an xterm, though if EDITOR is set to an xterm editor like emacs an xwindow will still launch.
This behavior is now similar to "svn commit".

3) Use the test command instead of shell scripting on the remote host to check if a file exists. This allows the script to work
even when the default shell script is something other than sh/tcsh. (Bash users can now rejoice).


7 lines of code changed in 1 file:

jmschrei 2010-03-16 19:33 Rev.: 45437

Major cleanup and simplification of the visit plugin code.

2261 lines of code changed in 14 files:

harman 2010-03-15 15:50 Rev.: 45435

exchangeParticles()
- added vertical and horizontal spaces to make it slightly more readable.

110 lines of code changed in 1 file:

harman 2010-03-15 13:28 Rev.: 45434

RelocateParticles()

Treading very lightly.

variable name change for consistency and clarity
keepset -> keep_pset
keepsets -> keep_psets
delset -> delete_pset
deliter -> delete_iter

formatting
added spaces
added comments

71 lines of code changed in 1 file:

luitjens 2010-03-14 21:14 Rev.: 45433

Compute and update extents as they are added to the level. Use getInteriorSpatialRange instead of getSpatialRange when finalizing the grid (the queries are actually the same at this point since the BCTypes haven't been set).

12 lines of code changed in 1 file:

luitjens 2010-03-14 20:43 Rev.: 45432

Added the == and != operator for BBox

0 lines of code changed in 2 files:

luitjens 2010-03-12 14:15 Rev.: 45431

Compute the spatial range and store it so queries are O(1) instead of O(Patches).

This fixes some performance issues in ICE boundary condition code and possibly elsewhere.

23 lines of code changed in 2 files:

luitjens 2010-03-12 09:40 Rev.: 45430

Removed some stale documentation and pulled a weed from the code.

0 lines of code changed in 2 files:

harman 2010-03-11 15:36 Rev.: 45429

First pass at making this code slightly more readable.

Lifted prohibition on vertical and horizontal spaces
Lifted prohibition on vertical alignment.
Lifted prohibition on {} around conditional statements and loops.

165 lines of code changed in 1 file:

harman 2010-03-11 11:41 Rev.: 45427

file that contains a list of the environmental variables that can be
set.

34 lines of code changed in 1 file:

luitjens 2010-03-11 11:24 Rev.: 45426

Added a new debug stream ExecTimes:+ which outputs the time for execution on each task.

25 lines of code changed in 1 file:

harman 2010-03-10 17:20 Rev.: 45425

added coarseLevel_CFI_NodeIterator()
added fineLevel_CFI_NodeIterator()

125 lines of code changed in 2 files:

harman 2010-03-10 17:16 Rev.: 45424

scheduleTimeAdvance()
eliminated redundant code

computeZoneOfInfluence()
- wrote a new version. I'm not sure that it's much better than the original version (still in code).

205 lines of code changed in 1 file:

harman 2010-03-10 14:37 Rev.: 45423

added = operator

9 lines of code changed in 1 file:

jmschrei 2010-03-09 14:50 Rev.: 45421

Allow preventing the thread class from installing its atexit handler with an environment variable - works around visit processes getting killed when dlclose is called

8 lines of code changed in 2 files:

jas 2010-03-09 10:28 Rev.: 45420

Update copyright dates.

94 lines of code changed in 164 files:

jas 2010-03-08 20:53 Rev.: 45416

Update release number to version 1.2.

Remove components not used in the release, i.e. Angio, and SpatialOps.

457 lines of code changed in 7 files:

jas 2010-03-08 18:49 Rev.: 45415

Backout revision 45413

194 lines of code changed in 10 files:

harman 2010-03-08 17:36 Rev.: 45414

cleanup
- user now has the option to skip test 6 (RAID stripe test) with command line option -6


0 lines of code changed in 2 files:

jas 2010-03-08 16:11 Rev.: 45413

Update release files that remove specific components.

112 lines of code changed in 10 files:

qymeng 2010-03-08 15:31 Rev.: 45411

Make external ready queue to a priority queue.
Priority algorithm can be selected by <taskReadyQueueAlg> tag
Algorithms supported now are:
MostChildren LeastChildren MostAllChildren LeastAllChildren MostMesssages LeastMesages Random FCFS

190 lines of code changed in 6 files:

harman 2010-03-08 14:52 Rev.: 45410

InterpolateParticlesToGrid()
- using standard findCellandWeights().
- turned off ZOI findCellAndWeights

InterpolateToParrticlesAndUpdate()
- saving conserved quantities totalMomentum, CMX, KE, thermal energy.
- using standard findCellandWeights()
- turned off ZOI findCellAndWeights


AMRMPM.cc (1 level) gives the same results as mpm.

77 lines of code changed in 1 file:

jas 2010-03-08 14:00 Rev.: 45409

Update copyright dates

1164 lines of code changed in 1915 files:

harman 2010-03-08 13:39 Rev.: 45408

-ignoreVariable option
User can now ignore a variable in just one uda. This is useful when comparing
udas that have a different number of checkpoint variables.

17 lines of code changed in 1 file:

jas 2010-03-08 11:04 Rev.: 45407

Delete files no longer needed for release builds.

0 lines of code changed in 3 files:

jas 2010-03-08 10:57 Rev.: 45406

Change the pump command from pump to distcc-pump used for inferno builds.

1 lines of code changed in 1 file:

jas 2010-03-08 10:54 Rev.: 45405

Undoing commit 45403

5550 lines of code changed in 1442 files:

jas 2010-03-07 23:50 Rev.: 45404

Add missing include files that were accidently removed.

22 lines of code changed in 1 file:

jas 2010-03-07 23:13 Rev.: 45403

Update copyright date.

1541 lines of code changed in 1437 files:

jmschrei 2010-03-05 18:07 Rev.: 45401

removing getNumPatches(), getNumLevels(), and getPatchIndex() since they're not used and their functionality is redundant

0 lines of code changed in 3 files:

jas 2010-03-05 15:34 Rev.: 45400

Add Benchmark files.

357 lines of code changed in 2 files:

jas 2010-03-05 15:29 Rev.: 45399

Add benchmark component which is a clone of the poisson1 example.

8 lines of code changed in 3 files:

harman 2010-03-04 17:54 Rev.: 45398

Work towards getting single level AMRMPM to give the same answers as SerialMPM

moved stress calculation to so we're now doing update-stress-last.

Does not run.

50 lines of code changed in 1 file:

harman 2010-03-04 16:48 Rev.: 45397

make the exception easier to read

2 lines of code changed in 1 file:

luitjens 2010-03-04 11:11 Rev.: 45396

Updated WaitTimes:+ to output statistics on which tasks are waiting and which tasks are being waited for.


36 lines of code changed in 5 files:

jmschrei 2010-03-03 18:47 Rev.: 45395

proper template instantiation in build.cc, lots more code cleanup/organization

374 lines of code changed in 6 files:

harman 2010-03-03 16:52 Rev.: 45394

now saving totalMassBurned and totalHeatReleased.

104 lines of code changed in 3 files:

luitjens 2010-03-03 10:09 Rev.: 45393

Changes <= to <

1 lines of code changed in 1 file:

luitjens 2010-03-03 10:07 Rev.: 45392

Implemented the equals function for comparing if two subsets are equal.

12 lines of code changed in 1 file:

jmschrei 2010-03-02 17:25 Rev.: 45391

fixed domain nesting caching, cleaning up unneeded member variables

152 lines of code changed in 2 files:

jmschrei 2010-03-02 15:48 Rev.: 45390

removing debug print from last accidental commit

0 lines of code changed in 1 file:

jmschrei 2010-03-02 15:44 Rev.: 45389

updated class derivation heirarchy of LatIndex - fixes strict aliasing warnings from gcc 4.4

1 lines of code changed in 1 file:

jmschrei 2010-03-02 15:17 Rev.: 45388

updated class derivation heirarchy of LatIndex - fixes strict aliasing warnings from gcc 4.4

0 lines of code changed in 2 files:

jmschrei 2010-03-02 15:05 Rev.: 45387

fixed global variable caching, only load requested particle data, lots of code cleanup

503 lines of code changed in 8 files:

luitjens 2010-03-02 12:49 Rev.: 45386

Removed some empty messages, these create unnecessary synchronization which is no longer necessary since forgein variables are versioned.

2 lines of code changed in 1 file:

jthornoc 2010-03-01 19:25 Rev.: 45385

3 Changes:
1) Fixed a bug in computing the diffusion term @ dirichlet boundary conditions. Before, diffusion was being computed across the dirichlet BC.
2) Fixed a bug in the interpolation of density. On dirichlet BCs, density was being interrelated when it should have been set to the BC value.
3) Added boundary condition bullet proofing for DQMOM equations and for scalar equations.

338 lines of code changed in 6 files:

harman 2010-03-01 18:21 Rev.: 45384

cosmetics:
- removed weeds
- consistent spacing

64 lines of code changed in 1 file:

harman 2010-03-01 17:57 Rev.: 45383

ActuallyInitialize()
- removed
#if 0
// scalar used for debugging
if(flags->d_with_color) {
ParticleVariable<double> pcolor;
ParticleSubset* pset = new_dw->getParticleSubset(indx, patch);
setParticleDefault(pcolor, lb->pColorLabel, pset, new_dw, 0.0);
}
#endif

Something I added back in 2007 and has never been used.

0 lines of code changed in 1 file:

harman 2010-03-01 17:36 Rev.: 45382

oops

1 lines of code changed in 1 file:

harman 2010-03-01 17:35 Rev.: 45381

Cosmetics:
- added comment lines between tasks.
- scheduling tasks as AMRMPM task not MPM tasks

142 lines of code changed in 1 file:

luitjens 2010-03-01 16:49 Rev.: 45380

Removed what appears to be a weed. The same schedule line appears a few lines above here.

0 lines of code changed in 1 file:

harman 2010-03-01 11:52 Rev.: 45379

added amrmpm simulation component

2 lines of code changed in 1 file:

February 2010 »

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