April 2010 Commit Log

Number of Commits:
93
Number of Active Developers:
9
dav 2010-04-30 20:15 Rev.: 45597

Forgot a file with last commit... Put TabProps vars in.

5 lines of code changed in 1 file:

dav 2010-04-30 20:13 Rev.: 45596

Added in --with-tabprops=DIR for Jeremy.

115 lines of code changed in 3 files:

jpeterson 2010-04-30 13:48 Rev.: 45595

Undo last changes to models:
d(prod) = dF*(prod+rct) because: dF = d(prod)/(prod+rct).

2 lines of code changed in 2 files:

jpeterson 2010-04-29 20:02 Rev.: 45594

Fixed burned mass expression by removing product mass variable from calculation

3 lines of code changed in 2 files:

dav 2010-04-29 14:33 Rev.: 45593

Fix debug typo accidentally committed last time.

0 lines of code changed in 2 files:

dav 2010-04-29 14:21 Rev.: 45592

Fix 'removal of include box.h'. DebugStream is in SCIRun namespace so need 'using' statement.

4 lines of code changed in 1 file:

dav 2010-04-29 14:20 Rev.: 45591

Fix linking issues on Mac, cleanup file.

28 lines of code changed in 1 file:

luitjens 2010-04-29 13:41 Rev.: 45590

Removed some debugging code.

0 lines of code changed in 2 files:

luitjens 2010-04-29 11:15 Rev.: 45588

Fixed a few bugs in the benchmark regridding algorithms.

Added the GBRv2 regridding algorithm.


1535 lines of code changed in 13 files:

harman 2010-04-29 10:30 Rev.: 45587

- removed extraneous #includes
- replaced box.contains() calls with patch->containsPointInExtraCells()

8 lines of code changed in 1 file:

jthornoc 2010-04-29 09:22 Rev.: 45586

Fixed a memory leak.

15 lines of code changed in 2 files:

luitjens 2010-04-29 08:36 Rev.: 45585

Fixed a minor bug that would cause patches to split at the incorrect position.

0 lines of code changed in 2 files:

jthornoc 2010-04-28 13:40 Rev.: 45580

Fixed an issue (le bug) with the density for multi RK timestepping.
Removed unnecessary gets for phi in the buildTransportEqn method.
Removed uncecessary boundary condition application in the buildTransportEqn method.

53 lines of code changed in 2 files:

harman 2010-04-28 13:13 Rev.: 45579

using sfigure instead of figure to avoid focus-theft

16 lines of code changed in 7 files:

harman 2010-04-27 17:52 Rev.: 45578

added missing get.


1 lines of code changed in 1 file:

harman 2010-04-27 17:51 Rev.: 45577

Moved the code that determines if at crack has opened sufficiently outside of the main loop.

untested!

23 lines of code changed in 1 file:

harman 2010-04-27 16:43 Rev.: 45576

set the burning flag =1 when the cell is truely burning.


11 lines of code changed in 1 file:

harman 2010-04-27 16:11 Rev.: 45575

Get particle data out of the DW at the top of the task.

9 lines of code changed in 1 file:

harman 2010-04-26 17:44 Rev.: 45574

gather()
- Code inside of the #if SCI_ASSERTION_LEVEL >= 2 is now always compiled.

0 lines of code changed in 1 file:

harman 2010-04-26 17:26 Rev.: 45573

gather()
Variable name change:
dstiter -> dst_iter
srciter -> src_iter
added vertical space, and {}

Changed assertions. Manually performing an intersection between the particleSubSet
hi/low cell index and the particle location cell index. Throw the assertion if
there is no intersection.

44 lines of code changed in 1 file:

harman 2010-04-26 13:21 Rev.: 45572

more descriptive variable names
neighbors -> neighborPatches
neighbor -> neighborPatch

added vertical spaces.

20 lines of code changed in 1 file:

harman 2010-04-26 13:05 Rev.: 45571

added warning comment to function contains()

4 lines of code changed in 1 file:

harman 2010-04-23 15:35 Rev.: 45570

- added new method for finding the VarLabel p.CrackRad.

- bulletproofing. If burn in cracks is turned on and visco_scram is not
being used then throw an exception.

- Only require/get pCrackRad for reactant matl.

- minor formatting

35 lines of code changed in 3 files:

harman 2010-04-23 11:12 Rev.: 45569

1 lines of code changed in 1 file:

harman 2010-04-23 11:07 Rev.: 45568

checkGetAccess()
- Added spaces and {} around conditionals
- Added processor rank to first column of SCI_DEBUG output.
- cleaned up SCI_DEBUG output.

31 lines of code changed in 1 file:

harman 2010-04-23 09:33 Rev.: 45567

removed all

#ifdef WAYNE_DEBUG

code.

5 lines of code changed in 1 file:

harman 2010-04-22 16:28 Rev.: 45566

scheduleAddCohesiveZoneForces()
- removed requires for variables that are not used in the task. Difficult to debug!!!

addCohesiveZoneForces()
- removed commented out code.

updateCohesiveCohesiveZones()
- name change: mpm_matl-> cz_matl.



6 lines of code changed in 1 file:

harman 2010-04-22 15:55 Rev.: 45565

Added SCI_DEBUG TaskGraph0 which only shows the computes/requires of each task added.

Added snippet of debugging code (turned off) that will display all a tasks attributes
if a varLabel is requested by the task.

18 lines of code changed in 1 file:

jas 2010-04-22 14:05 Rev.: 45564

Build the doxygen documentation in the htdocs directory.

11 lines of code changed in 1 file:

charlesreid 2010-04-22 13:36 Rev.: 45563

Changing moment calculation to be moments about the mean

14 lines of code changed in 1 file:

harman 2010-04-22 12:54 Rev.: 45562

Output the processor rank in the first column when dumping out the detailed computes/
requirements of a task.

5 lines of code changed in 1 file:

charlesreid 2010-04-22 02:40 Rev.: 45561

Changing std runtime errors to Uintah type errors

0 lines of code changed in 6 files:

harman 2010-04-21 15:46 Rev.: 45560

Throw an exception if either the top or bottom materials in the input file is not
a MPM material.

27 lines of code changed in 1 file:

jpeterson 2010-04-21 15:12 Rev.: 45559

Cracking model code for DDT0 model

89 lines of code changed in 2 files:

harman 2010-04-21 10:48 Rev.: 45557

additional entry

2 lines of code changed in 1 file:

jthornoc 2010-04-21 10:23 Rev.: 45556

Applying boundary conditions now after time averaging so that phi_old has the correct BC values.
Updated spec for TabProps.

8 lines of code changed in 2 files:

jthornoc 2010-04-21 08:13 Rev.: 45555

Changed the looping structure on the get unscaled values. It was messing with the boundary conditions.

1 lines of code changed in 1 file:

jas 2010-04-20 08:52 Rev.: 45554

Fix compiler warnings.

12 lines of code changed in 3 files:

charlesreid 2010-04-19 23:32 Rev.: 45553

Adding error-catching related to HDF5. Currently, there are some errors if HAVE_HDF5 is not defined, but they occur in the BSpline class, and the user won't see them. These new error messages will occur whenever an HDF5 file is read without HAVE_HDF5 being defined.

0 lines of code changed in 4 files:

harman 2010-04-19 16:23 Rev.: 45552

Global variable name change
cz_state -> d_cz_state
cz_state_preReloc -> d_cz_state_preReloc

Initialize cellNAZID as an (int) not a (double)

26 lines of code changed in 2 files:

jthornoc 2010-04-19 15:58 Rev.: 45551

Apply particle velocity boundary conditions in the correct order. (Doh!)

18 lines of code changed in 1 file:

luitjens 2010-04-19 15:28 Rev.: 45550

Modified the splitting algorithm.

0 lines of code changed in 2 files:

luitjens 2010-04-19 15:26 Rev.: 45549

Modifed the output slightly

29 lines of code changed in 1 file:

harman 2010-04-19 11:59 Rev.: 45548

only schedule computeModelsources on the finest level.

- removed requirement for reactedFractionLabel from the old_dw.
1) you can't pull data from the old_dw from newly refined region unless there
is a refinement task.

2) the way it's used doesn't make sense if the reactants are moving.

15 lines of code changed in 1 file:

harman 2010-04-19 09:01 Rev.: 45546

added another flag

1 lines of code changed in 1 file:

charlesreid 2010-04-18 19:16 Rev.: 45545

Make other stuff be quieter too

6 lines of code changed in 2 files:

charlesreid 2010-04-18 19:15 Rev.: 45544

Make TabProps interface be quieter

1 lines of code changed in 1 file:

harman 2010-04-16 17:40 Rev.: 45543

Somewhere in the code fray the new method for computing materialset was deleted. Added it back.

0 lines of code changed in 2 files:

luitjens 2010-04-16 17:13 Rev.: 45542

Updated input parameters

11 lines of code changed in 1 file:

harman 2010-04-16 16:58 Rev.: 45541

output level index in operator <<

2 lines of code changed in 1 file:

harman 2010-04-16 11:13 Rev.: 45540

addDependencyEdges()
- improved exception output if a requirement isn't met. Hopefully this will cut
down on the amount of time a developer spends looking for invalid computes/requires

28 lines of code changed in 1 file:

luitjens 2010-04-16 08:01 Rev.: 45539

output more decimal places.

3 lines of code changed in 1 file:

jthornoc 2010-04-16 07:04 Rev.: 45538

Arches.cc:
* Reordered the construction of scalar equations to allow an extra scalar equation to be used as a mixture fraction.
* Added call to TabPropsInterface through reComputeProps_new. The _new function will go away once properties is removed.

BoundaryCondition.cc:
* Flow inlets can now set a "mixture_fraction_2" for the the second mixture fraction.

ExplicitSolver.cc:
* Added call to reComputeProps_new and added ability to update scalar equations if density guess boolean is true (as set from the input file).

Properties.cc, Properties.h:
~ Ultimately it would be nice to either get rid or greatly simplify this code. I think there is a lot of unnecessary stuff going on in here.
~ This code still needs a little cleanup to remove (old) TabProp weeds.
* Added the TabProps interface option in problem setup.
* Added an access function to determine what mixing model was being used.
* Removed some old tabprop weeds.
* Added boundary condition property update for tabprops
* Added reComputeProps_new which accesses TabProps.

EqnBase.h:
* Added the d_use_density_guess boolean which informs the algorithm that this particular transport equation should be updated *before* properties are computed, using the guessed density as the rho^(n+1) rather than the density coming from the table. Just add <use_density_guess/> tag to transport equation block.

ScalarEqn.cc:
* Initialization for d_use_density_guess boolean.

TabPropsInterface.cc, *.h:
~ Still needs some major cleanup and bullet proofing
* Removed TabPropsTable because the name was a bit redundant and replaced it with this class.
* Major rewrite of this method to simplify things a bit.

MixingRxnTable.cc, *.h:
* Robustness, generality

InletStream.h:
* Added second mixture fraction.

1289 lines of code changed in 18 files:

luitjens 2010-04-15 19:47 Rev.: 45537

Added an extend function to extend by a bounding box.

0 lines of code changed in 2 files:

luitjens 2010-04-15 19:43 Rev.: 45536

Added benchmarking code for different regridding algorithms including 2 versions of Berger-Rigoutsos and the Tiled Regridder.

1421 lines of code changed in 11 files:

charlesreid 2010-04-15 18:49 Rev.: 45535

* Cleaning up
* Clarification of error messages
* Adding error-checking for zero-viscosity (b/c of Reynolds number)

24 lines of code changed in 3 files:

jpeterson 2010-04-15 16:30 Rev.: 45534

Moved computeSurfaceArea method and helper to a separate file--reduce code sprawl

165 lines of code changed in 17 files:

harman 2010-04-15 16:15 Rev.: 45533

deleted d_rho0, it's not used

variable name change
d_threshold_pressure -> d_threshold_press_JWL
d_thresholdPress -> d_threshold_press_SB

10 lines of code changed in 2 files:

jpeterson 2010-04-15 15:58 Rev.: 45532

Changed surface area logic to match that in Steady Burn

164 lines of code changed in 4 files:

harman 2010-04-15 15:01 Rev.: 45531

removed all activate code
removed all checkNeedAddMaterial code
cleanup computes and requires.
- now pulling cell centered MPM data from the NewDW.
- Only using gac on variables that need it.
- eliminated unused variables
- removed duplicate requires

Consolidated get(), allocateAndPut() code

Consistent variable names
reactants: rct(*)
products: prd(*)

formatting

*This should improve the answers slightly, since were pulling in input data
from the correct DW.

215 lines of code changed in 2 files:

harman 2010-04-15 11:01 Rev.: 45530

ScheduleComputeEquilibrationPressure()
- removed modifies for mpm_matl:rho_CC.
This task doesn't modify it.


0 lines of code changed in 1 file:

harman 2010-04-15 10:36 Rev.: 45529

computeEquilibrationPressure()
- removed requires and get for mpm:cMassLabel. It's not used in task

0 lines of code changed in 1 file:

charlesreid 2010-04-15 01:14 Rev.: 45528

Adding debug printing capability for optimized solver too

50 lines of code changed in 1 file:

charlesreid 2010-04-14 21:53 Rev.: 45527

Fixing a destructor problem so sus exits cleanly

3 lines of code changed in 1 file:

qymeng 2010-04-14 17:44 Rev.: 45526

Updated priority task queue algorithm

63 lines of code changed in 2 files:

harman 2010-04-14 16:01 Rev.: 45525

moved definition of d_one_matl from constructor to
problemSetup(), where d_myMatls is defined.


8 lines of code changed in 1 file:

harman 2010-04-14 15:16 Rev.: 45524

simplified code for computing materialSet

85 lines of code changed in 8 files:

harman 2010-04-14 14:58 Rev.: 45523

global changes:
mymatls -> d_mymatls
matl0 -> d_matl0
matl1 -> d_matl1
one_matl -> d_one_matl

ProblemSetup() & activateModel()
- simplified the code for defining a model materialSet()

66 lines of code changed in 2 files:

harman 2010-04-14 14:55 Rev.: 45522

added addAll_unique()
- This takes a input vector and only adds unique elements to the set.

0 lines of code changed in 2 files:

jas 2010-04-13 17:11 Rev.: 45521

Don't include the ComplexGrid.xml files for the tarball releases.

2 lines of code changed in 1 file:

jpeterson 2010-04-13 16:06 Rev.: 45520

Added Vol Minimum for detonation to mirror Todd's change to JWL++

8 lines of code changed in 2 files:

qymeng 2010-04-13 15:51 Rev.: 45519

Output average task queue length if QueueLength debug flag is set.

120 lines of code changed in 1 file:

harman 2010-04-13 08:22 Rev.: 45518

ScatterRecord
- changed vectorToNeighbor from a IntVector to a Vector. In a multilevel grid
you need to use the positions instead of indices to have a unique vectorToNeighbor.

findNeighboringPatches(): fineLevel section
- take intersection of current patches ExtraCellHigh/Low indices and fine patches
face (mapped to a coarse cell)

33 lines of code changed in 1 file:

qymeng 2010-04-12 20:49 Rev.: 45517

get the type with getAttribute() instead of get()

0 lines of code changed in 2 files:

jpeterson 2010-04-09 16:58 Rev.: 45515

Fixed duplicate compute() call in DDT1. Add some functionality to plotBurnedMass script. This script still needs some work to work with 3D problems

0 lines of code changed in 1 file:

harman 2010-04-09 16:48 Rev.: 45514

# extractGrid.pl:
#
# input: timestep.xml
#
# This script parses the grid section of a timestep.xml file and produces
# the <level> specs that can be used in a ups file. The user would
# run this script on a timestep.xml file that has a complicated multilevel grid
# and then import that into a new ups file using. This is useful for testing
# and debugging.
#
# <include href="/tmp/3DcomplicatedGrid.xml"/>
#
# Perl Dependencies:
# libxml-simple-perl
# libxml-dumper-perl

139 lines of code changed in 1 file:

luitjens 2010-04-09 15:50 Rev.: 45513

removed tabs

0 lines of code changed in 2 files:

jpeterson 2010-04-08 16:35 Rev.: 45512

Steady Burn version of DDT Model

1218 lines of code changed in 4 files:

qymeng 2010-04-08 11:24 Rev.: 45511

Separated dynamic MPI scheduler code from original MPI scheduler.
Use <Scheduler DynamicMPI> </Scheduler >to select the dynamic MPI scheduler from now on.
Added OncePerProc task support for dynamic MPI scheduler.

779 lines of code changed in 10 files:

jpeterson 2010-04-07 16:41 Rev.: 45510

Remove debug cout

0 lines of code changed in 1 file:

jpeterson 2010-04-07 16:37 Rev.: 45509

Ability to get initial density in ICE

7 lines of code changed in 3 files:

luitjens 2010-04-07 13:41 Rev.: 45508

Fixed the extend function to add 1 to the high point, this matches the way we use this class (lower bound is inclusive, upper is exclusive).

1 lines of code changed in 1 file:

luitjens 2010-04-07 11:42 Rev.: 45507

Added an extend function which can be used to extend the region to cover a point.

6 lines of code changed in 1 file:

jmschrei 2010-04-06 15:19 Rev.: 45506

removing assumption that all particle data is on the same level

24 lines of code changed in 3 files:

harman 2010-04-05 16:53 Rev.: 45503

removed Windows/Atari/Radio Shack control characters

0 lines of code changed in 2 files:

harman 2010-04-05 16:34 Rev.: 45502

validateVector()
- remove all spaces from text before determining if the vector is valid. User
can now specify

[1 , 1, 1]
[1 ,1,1]

and it won't yell at them

0 lines of code changed in 2 files:

harman 2010-04-05 15:53 Rev.: 45501

update failure message

1 lines of code changed in 1 file:

harman 2010-04-05 12:12 Rev.: 45500

added addition criteria that must be satisfied before a cell will begin burning.
The volume fraction of the reactant in that cell > d_threshold_volfrac. The
default value for d_threshold_volFrac is 0.01. The user can change this
by specifying:

<ThresholdVolFrac> X </ThresholdVolFrac>

17 lines of code changed in 3 files:

luitjens 2010-04-04 14:10 Rev.: 45499

Another fix to pscp2

1 lines of code changed in 1 file:

luitjens 2010-04-03 13:38 Rev.: 45498

Modified logic to check if remote directory exists. I'm trying to make this more portable.

1 lines of code changed in 1 file:

harman 2010-04-02 17:04 Rev.: 45496

added << operator for scatterRecord

Function:
findRecord() -> findOrInsertRecord()

Variable:
pr -> procRecord

findNeighboringPatches()
-commented out coutdbg statements

-changed criteria for adding fine level patch to neighboring patch.
If the range of the patch face intersects with the coarse patch then add
it as a neighbor.

Working for multiple levels, multiple patches per level, multiple processors,
refinement ratio of 1.
disk_AMR_3D.ups.

41 lines of code changed in 1 file:

harman 2010-04-02 16:07 Rev.: 45495

Moved code that performs an intersection of 2 boxes or ranges to IntVector.h

20 lines of code changed in 5 files:

harman 2010-04-02 14:22 Rev.: 45494

added entry

1 lines of code changed in 1 file:

March 2010 »

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