November 2016 Commit Log

Number of Commits:
63
Number of Active Developers:
9
allen 2016-11-30 14:04 Rev.: 56030

added additonal space

4 lines of code changed in 1 file:

dav 2016-11-29 17:50 Rev.: 56029

Fix a few missed updates from Allens commit a little while back with regards to PIDX sections. Have not tested, but believe this is correct.

4 lines of code changed in 1 file:

jsutherland 2016-11-29 17:08 Rev.: 56028

Update Update due to PoKiTT API change

3 lines of code changed in 3 files:

dav 2016-11-29 17:03 Rev.: 56027

Couple of relatively minor fixes to configure system to catch corner case bugs.

M configure.ac
M configure

- Automatically add "-fp-model precise" to CFLAGS (for optimized builds) when using Intel compiler.
- Rename "with_malloc_trace" to "with_MallocTrace" for consistency and so that macro expansion will work with
this flag.
- Add in code (was already in configure.ac but not in configure?) that will remove out of date .o files that
depend on the Wasatch 3P when the W3P changes (via configure).

M aclocal.m4

- Catch when the user says something like "--with-fortran= " (User must point to a
directory and this previously allowed for bad logic to happen).


0 lines of code changed in 2 files:

jthornoc 2016-11-29 11:24 Rev.: 56025

Use shared_ptr. This will fix the memory leak in the nightly RT.

11 lines of code changed in 1 file:

harman 2016-11-29 09:03 Rev.: 56024

Turn off restart tests for RMCRT_+Domain_thread_2proc test.


0 lines of code changed in 2 files:

jthornoc 2016-11-28 17:46 Rev.: 56023

Cleanup.

Also, the timesteps werent aligning properly for the restarts on the
kokkos scalar tests.

42 lines of code changed in 1 file:

jthornoc 2016-11-28 17:46 Rev.: 56022

Cleanup and add three new kokkos-scalar regression tests.

84 lines of code changed in 7 files:

jthornoc 2016-11-28 12:07 Rev.: 56019

Remove unused variables/functions.
Move to a consistent naming convention for private members in Arches.cc - this is a work in progress.

88 lines of code changed in 5 files:

harman 2016-11-28 09:18 Rev.: 56015

Disable restart tests on "+" domain tests.

2 lines of code changed in 1 file:

guilkey 2016-11-22 18:33 Rev.: 56010

Turning off the Collide AMR test. I give up.

0 lines of code changed in 2 files:

allen 2016-11-22 13:02 Rev.: 56009

added missing ifdef

0 lines of code changed in 2 files:

allen 2016-11-22 12:57 Rev.: 56008

updated in-situ to save both old and new vars

0 lines of code changed in 6 files:

allen 2016-11-22 12:55 Rev.: 56007

added new output for saving variable modified in the in-situ

70 lines of code changed in 5 files:

allen 2016-11-22 10:52 Rev.: 56006

restored flag to false

3 lines of code changed in 1 file:

allen 2016-11-21 14:22 Rev.: 56005

added timers, changed reporting

84 lines of code changed in 6 files:

allen 2016-11-21 14:19 Rev.: 56004

clean up of the controllers

1032 lines of code changed in 5 files:

allen 2016-11-21 14:16 Rev.: 56003

comment clean up

0 lines of code changed in 2 files:

allen 2016-11-21 14:16 Rev.: 56002

removed unused header

0 lines of code changed in 2 files:

allen 2016-11-21 14:15 Rev.: 56001

added running flag

0 lines of code changed in 2 files:

bpeterson 2016-11-19 14:14 Rev.: 55998

Seems the trunk GPU RMCRT code had the fixed random number flag turned on. Fixing that by turning it back off

0 lines of code changed in 2 files:

bpeterson 2016-11-19 14:12 Rev.: 55997

Tweaking the code so float support for GPU RMCRT works again on data onion

10 lines of code changed in 1 file:

guilkey 2016-11-19 11:26 Rev.: 55994

Put the correct guts inside of getOtherLevelPatches55902.

0 lines of code changed in 2 files:

guilkey 2016-11-18 18:02 Rev.: 55992

Hacking in a "fix" that will get the RT passing again. Hopefully this will be
revisited some day.

72 lines of code changed in 4 files:

jthornoc 2016-11-18 17:40 Rev.: 55991

Removing boost-isms.

37 lines of code changed in 3 files:

jthornoc 2016-11-18 16:47 Rev.: 55990

Warning.

0 lines of code changed in 2 files:

jthornoc 2016-11-18 16:36 Rev.: 55989

Warning.

2 lines of code changed in 1 file:

jthornoc 2016-11-18 16:33 Rev.: 55988

Have the solvers generate the new task factories rather than Arches.cc

181 lines of code changed in 7 files:

jthornoc 2016-11-18 15:09 Rev.: 55987

boost::shared_ptr -> std::shared_ptr

25 lines of code changed in 7 files:

jthornoc 2016-11-18 14:36 Rev.: 55986

This variable isn't needed.

0 lines of code changed in 1 file:

jthornoc 2016-11-18 14:36 Rev.: 55985

Cruft removal.

82 lines of code changed in 6 files:

jthornoc 2016-11-17 15:29 Rev.: 55984

This should remove a bunch of warnings from my previous commit.

245 lines of code changed in 10 files:

jthornoc 2016-11-17 15:28 Rev.: 55983

Noteworthy comments on changes to files follows.
All other changes should be self-evident.

------

new file: src/CCA/Components/Arches/Task/AtomicTaskInterface.cc
new file: src/CCA/Components/Arches/Task/AtomicTaskInterface.h
Comment: A new Arches task without any algorithmic abstraction.

-------

new file: src/CCA/Components/Arches/Task/TaskVariableTools.h
Comment: Moved functionality out of the TaskInterface and into this helper file.

-------

new file: src/CCA/Components/Arches/UPSHelper.h
Comment: Helper for common tasks in parsing the UPS file.

-------

new file: src/CCA/Components/Arches/Utility/SurfaceVolumeFractionCalc.cc
new file: src/CCA/Components/Arches/Utility/SurfaceVolumeFractionCalc.h
Comment: Stub function for calculating Surface and volume fractions. Everything is = 1 at this point.

-------

modified: src/CCA/Components/Arches/BoundaryFunctors.h
Comment: Complete rework of the boundary functor class.

-------

modified: src/CCA/Components/Arches/ConvectionHelper.h
Comment: Moved to using volume fraction only for boundary conditions rather than surface area fractions.
This greatly simplified the implementation for all field types, but requires a ternay now to
discover boundaries.

-------

modified: src/CCA/Components/Arches/ExplicitSolver.cc
modified: src/CCA/Components/Arches/ExplicitSolver.h
Comment: Begun to consolidate the boundary condition setup proceedure into a function call so that we have
consistency between initialize and timeStepInitialize.

-------

modified: src/CCA/Components/Arches/KokkosSolver.cc
modified: src/CCA/Components/Arches/KokkosSolver.h
Comment: More work on the KokkosSolver to include dynamic timestep calculation among a few other little improvements.

------

modified: src/CCA/Components/Arches/Transport/KFEUpdate.h
Comment: Get the appropriate cell ranges for the different grid types. This needs some verification work.

------

modified: src/CCA/Components/Arches/WBCHelper.cc
modified: src/CCA/Components/Arches/WBCHelper.h
Comment: Inclusion of the "functor" abstraction into WBCHelper.

------

2169 lines of code changed in 39 files:

jthornoc 2016-11-16 15:48 Rev.: 55982

Clean up these print statements. Since rank-0 is not guarenteed to have
the bc, this results in potentially bogus information in the print
statement. Better to report nothing.

13 lines of code changed in 1 file:

harman 2016-11-15 11:10 Rev.: 55979

coarsenQ() coarsen extraCells
- limit the coarse level cell iterator to
// don't exceed the coarse patch
cl = Max(cl, coarsePatchLo);
ch = Min(ch, coarsePatchHi)


0 lines of code changed in 2 files:

jsutherland 2016-11-14 17:44 Rev.: 55977

Update git hash for SpatialOps and ExprLib

2 lines of code changed in 1 file:

harman 2016-11-14 15:25 Rev.: 55975

update to parse new sus output.

0 lines of code changed in 2 files:

harman 2016-11-14 11:17 Rev.: 55973

coarsen_Q()
added code to coarsen the extra cells if the user asks for it.


rmcrt_bm1_DO.ups:
- changed the resolution so the coarse level has a refinement ratio of 2.


81 lines of code changed in 1 file:

bpeterson 2016-11-13 09:05 Rev.: 55971

This is a fix for Todd. Derek has been running this fix for the past two weeks and it's worked for him too. It just allows for extra cells to be involved in the coarsening process.

0 lines of code changed in 2 files:

allen 2016-11-11 19:16 Rev.: 55969

changed define tag

0 lines of code changed in 2 files:

jsutherland 2016-11-11 12:43 Rev.: 55968

Update SpeciesN due to changes in pokitt API.

2 lines of code changed in 1 file:

allen 2016-11-10 10:17 Rev.: 55966

removed error message because it did not solve the issue

13 lines of code changed in 1 file:

guilkey 2016-11-09 20:55 Rev.: 55965

Interpolators now return the number of entries that need to be looped over
in the code that calls them. Currently, this number is the same as the d_size
for all of the interpolators except the fastCPDI. fastCPDI previously only allo
wed the hash function to reach 27, but now it can go as high as 64, but it
usually will not. This commit doesn't change any answers in MPM, IMPM or
MPMICE.

424 lines of code changed in 81 files:

harman 2016-11-09 16:25 Rev.: 55964

added code to coarsen fine level extra cells to the coarser level extra cells. Incomplete

Added input file to test it.

User spec:
<algorithm type='dataOnion'>
<coarsenExtraCells> true </coarsenExtraCells>
</algorithm>

or

<algorithm type='RMCRT_coarseLevel'>
<coarsenExtraCells> true </coarsenExtraCells>
</algorithm>

92 lines of code changed in 7 files:

cgritton 2016-11-09 12:24 Rev.: 55963

Added a reminder to address the issue associated with the assert when the NanoPillar2D_FBC_sym.ups file is run.

2 lines of code changed in 1 file:

cgritton 2016-11-09 11:41 Rev.: 55962

Uncommented assert in task graph that causes issues with the NanoPillar2D_FBC_sym file.

1 lines of code changed in 1 file:

cgritton 2016-11-09 11:40 Rev.: 55961

Implemented working interface model for diffusion across material interfaces

292 lines of code changed in 10 files:

allen 2016-11-07 18:11 Rev.: 55956

fixed deleted to remove warning

0 lines of code changed in 2 files:

allen 2016-11-07 17:17 Rev.: 55955

added exception when data is not found

28 lines of code changed in 1 file:

harman 2016-11-04 17:19 Rev.: 55952

global name change d_halo -> d_haloCells

-Added input file option <haloLength>. User can specify a physical length, instead of the number of cells
that a ray must travel before dropping to a coarser level.


35 lines of code changed in 6 files:

derekhar 2016-11-03 14:29 Rev.: 55947

Changed radVolQ in RMCRT to be conistent with Discrete-ordinates.
This should change the answers to RMCRT tests.

7 lines of code changed in 1 file:

cgritton 2016-11-03 13:05 Rev.: 55946

Made needed updates to the constant rate diffusion model and cleaned up some whitespacing.

87 lines of code changed in 4 files:

cgritton 2016-11-02 14:58 Rev.: 55941

Fixed bugs associated with calling restart on the esmpm component.

2 lines of code changed in 3 files:

cgritton 2016-11-02 14:18 Rev.: 55939

Adding restart capabilities to esmpm.

28 lines of code changed in 10 files:

harman 2016-11-02 12:50 Rev.: 55937

renamed input files (*)_maxLen.ups -> (*)_bounded.ups to reflect recent ROI type change

13 lines of code changed in 2 files:

harman 2016-11-02 12:41 Rev.: 55936

Changed user inputs:

- <ROI_extents type='max_rayLength'> -> <ROI_extents type='boundedRayLength'>

It seems to be the converged terminology.

5 lines of code changed in 2 files:

cgritton 2016-11-02 11:23 Rev.: 55935

Added outputProblemSpec function to JGConcentrationDiffusion model and include output functions for the conductivity equations.

59 lines of code changed in 12 files:

harman 2016-11-02 10:47 Rev.: 55934

Added a 2-level benchmark1 test on a + computational domain.
RMCRT_+Domain:
- now using "bounded ray" region of interest.
- adjusted resolution to be divisible by 2.

Added RMCRT_+Domain+ML to regression tests

12 lines of code changed in 1 file:

harman 2016-11-02 10:12 Rev.: 55933

Include the level index in VARIABLE NOT FOUND exception.

10 lines of code changed in 1 file:

harman 2016-11-01 15:22 Rev.: 55932

Pushed the + domain problem into the 3rd dimension.

Added the + domain to the RT tests.

5 lines of code changed in 1 file:

dav 2016-11-01 15:08 Rev.: 55931

<checkpoint> walltimeStart and walltimeInterval are in integer seconds.

2 lines of code changed in 1 file:

harman 2016-11-01 12:52 Rev.: 55930

disable tests that continually fail on the nightly GPU RT.

3 lines of code changed in 1 file:

cgritton 2016-11-01 11:30 Rev.: 55929

Interpolation of espotential from cell centers to particles

190 lines of code changed in 7 files:

October 2016 »

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