Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2002


 E. Reinhard, C.D. Hansen, S.G. Parker. “Interactive Ray Tracing of Time Varying Data,” In Proceedings of The 4th Eurographics Workshop on Parallel Graphics and Visualization, Germany, pp. 77--82. September, 2002.

2001


 C.R. Johnson, D. Brederson, C.D. Hansen, M. Ikits, G. Kindlmann, Y. Livnat, S.G. Parker, D.M. Weinstein, R.T. Whitaker. “Computational Field Visualization,” In Computer Graphics, Vol. 35, No. 4, pp. 5--9. 2001.


Y. Livnat, C.D. Hansen, S.G. Parker, C.R. Johnson. “Isosurface extraction for large-scale datasets,” In Proceedings of Scientific Visualization -Dagstuhl`2000, Edited by F. Post, 2001.


K. Ma, S.G. Parker. “Massively Parallel Software Rendering for Visualizing Large-Scale DataSets,” In IEEE Trans. Vis & Comp. Graph., pp. 72--83. July/August, 2001.


J. McCorquodale, J.D. de St. Germain, S.G. Parker, C.R. Johnson. “The Uintah Parallelism Infrastructure: A Performance Evaluation on the SGI Origin 2000,” In Proceedings of The 5th International Conference on High-Performance Computing, Seattle, Mar, 2001.


R. Rawat, S.G. Parker, P.J. Smith, C.R. Johnson. “Parallelization and Integration of Fire Simulations in the Uintah PSE,” In Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, Portsmouth, Virginia, March 12-14, 2001.

2000


 J.D. de St. Germain, J. McCorquodale, S.G. Parker, C.R. Johnson. “Uintah: A Massively Parallel Problem Solving Environment,” In Ninth IEEE International Symposium on High Performance and Distributed Computing, IEEE, Piscataway, NJ, pp. 33--41. Nov, 2000.


C.R. Johnson, S.G. Parker, D. Weinstein. “Large-Scale Computational Science Applications Using the SCIRun Problem Solving Environment,” In Proceedings of The International Supercomputer Conference 2000, 2000.


Y. Livnat, S.G. Parker, C.R. Johnson. “Fast Isosurface Extraction Methods for Large Image Data Sets,” In Handbook of Medical Imaging, Edited by A.N. Bankman, Academic Press, San Diego, CA pp. 731--745. Nov, 2000.


S.G. Parker, M. Miller, C.D. Hansen, C.R. Johnson. “Computational Steering and the SCIRun Integrated Problem Solving Environment,” In Proceedings of Dagstuhl 1997 Workshop on Scientific Visualization, Note: Invited and peer reviewed, Edited by Hans Hagen and Greg Nielson and Frits Post, pp. 257--266. 2000.


D.M. Weinstein, L. Zhukov, C.R. Johnson, S.G. Parker, R. Van Uitert, R.S. MacLeod, C.D. Hansen. “Interactive Source Imaging with BioPSE,” In Chicago 2000 World Congress on Medical Physics and Biomedical Engineering, Chicago, IL., Note: Refereed abstract., July, 2000.

1999


 R. Armstrong, D. Gannon, A. Geist, K. Keahey, S. Kohn, L. McInnes, S.G. Parker, B. Smolinksi. “Toward a Common Component Architecture for High-Performance Scientific Computing,” In Proceedings of the 8th IEEE International Symposium on High Performance Distributed Computation (HPDC), August, 1999.


C.D. Hansen, T. Udeshi, S.G. Parker, P. Shirley. “Parallel Methods for Isosurface Visualization,” In Ninth SIAM Conference on Parallel Processing for Scientific Computing, Note: extended abstract, 1999.


C.R. Johnson, S.G. Parker. “The SCIRun Parallel Scientific Computing Problem Solving Environment,” In Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999.


C.R. Johnson, S.G. Parker, C.D. Hansen, G.L. Kindlmann, Y. Livnat. “Interactive Simulation and Visualization,” In IEEE Computer, Vol. 32, No. 12, pp. 59--65. Dec, 1999.


S.G. Parker, M. Parker, Y. Livnat, P.P. Sloan, C.D. Hansen, P. Shirley. “Interactive Ray Tracing for Volume Visualization,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 5, No. 3, pp. 238--250. July-September, 1999.


S.G. Parker, P. Shirley, Y. Livnat, C.D. Hansen, P.-P. Sloan, M. Parker. “Interacting with Gigabyte Volume Datasets on the Origin 2000,” In The 41st Annual Cray User's Group Conference, 1999.


S.G. Parker, W. Martin, P.-P. Sloan, P. Shirley, B. Smits, C.D. Hansen. “Interactive Ray Tracing,” In Symposium on Interactive 3D Graphics: Interactive 3D, pp. 119--126. April 26-28, 1999.


B. Walter, G. Drettakis, S.G. Parker. “Interactive Rendering Using the Render Cache,” In Rendering techniques '99 (Proceedings of the10thEurographics Workshop on Rendering), Vol. 10, Springer-Verlag/Wien, New York pp. 235--246. 1999.

1998


 M. Miller, C.D. Hansen, S.G. Parker, C.R. Johnson. “Simulation Steering with SCIRun in a Distributed Memory Environment,” In Seventh IEEE International Symposium on High Performance Distributed Computing (HPDC-7), Jul, 1998.