SCIRunAlgo Namespace Reference

Datatypes that the algorithm uses. More...

Classes
class	CleanupTetMeshAlgo
class	RemoveUnusedNodesAlgo
class	ClipMeshByIsovalueAlgoTet
class	ClipMeshByIsovalueAlgoTri
class	ClipMeshByIsovalueAlgoHex
class	ClipMeshByIsovalueAlgo
class	ClipMeshBySelectionAlgo
class	CollectPointCloudsAlgo
class	CompareFieldsAlgo
class	SimilarMeshesAlgo
class	ConvertLatVolDataFromElemToNodeAlgo
class	ConvertLatVolDataFromNodeToElemAlgo
class	ConvertMeshToTetVolMeshAlgo
class	ConvertMeshToUnstructuredMeshAlgo
class	CreateMeshFromNrrdAlgo
class	CalculateInsideWhichFieldAlgo
class	CalculateIsInsideFieldAlgo
class	GetDomainStructureAlgo
class	MatchDomainLabelsAlgo
class	SplitNodesByDomainAlgo
class	CalculateFieldDataMetricAlgo
class	CalculateLatVolGradientsAtNodesAlgo
class	CalculateVectorMagnitudesAlgo
class	ConvertFieldDataTypeAlgo
class	ConvertIndicesToFieldDataAlgo
class	ConvertMappingMatrixToFieldDataAlgo
class	SetFieldDataToConstantValueAlgo
class	SmoothVecFieldMedianAlgo
class	DilateFieldDataAlgo
class	ErodeFieldDataAlgo
class	TriSurfPhaseFilterAlgo
class	FindClosestNodeAlgo
class	FindClosestNodeByValueAlgo
class	FindClosestNodesFromPointFieldPAlgo
class	FindClosestNodesFromPointFieldAlgo
class	MapFieldDataFromSourceToDestinationClosestDataPAlgo
class	MapFieldDataFromSourceToDestinationSingleDestinationPAlgo
class	MapFieldDataFromSourceToDestinationInterpolatedDataPAlgo
class	MapFieldDataFromSourceToDestinationAlgo
class	MapFromPointFieldPAlgo
class	MapFromPointFieldAlgo
class	MarchingCubesAlgoP
class	MarchingCubesAlgo
class	MedialAxisAlgo
class	MedialAxisP
class	MedialAxis2Algo
class	AppendFieldsAlgo
class	FlipSurfaceNormalsAlgo
class	GetMeshQualityFieldAlgo
class	GetSurfaceElemNormalsAlgo
class	GetSurfaceNodeNormalsAlgo
class	CalculateMeshCenterAlgo
class	CalculateMeshConnectorAlgo
class	GetBoundingBoxAlgo
class	GetCentroidsAlgo
class	SortSizes
class	AscSortSizes
class	SplitByConnectedRegionAlgo
class	RefineMeshQuadSurfAlgoV
class	RefineMeshHexVolAlgoV
class	RefineMeshAlgo
class	RegisterWithCorrespondencesAlgo
class	PadRegularMeshAlgo
class	GeneratePointSamplesFromFieldAlgoF
class	GeneratePointSamplesFromFieldAlgo
class	GenerateStreamLinesAlgoP
class	GenerateStreamLinesAccAlgo
class	GenerateStreamLinesAlgo
class	StreamLineIntegrators
class	InterfaceWithTetGenAlgo
class	TracePointsAlgo
class	ConvertMeshCoordinateSystemAlgo
class	GeneratePolarProjectionAlgo
class	GeneratePolarProjectionImageAlgo
class	TransformMeshWithTransformAlgo
class	TransformPlanarMeshAlgo
struct	IndexHash
class	BuildFESurfRHSAlgo
class	FEMVolRHSBuilder
class	BuildFEVolRHSPrivateData
class	BuildFEVolRHSAlgo
class	BuildFEGridMappingAlgo
class	BuildNodeLinkAlgo
class	LinkElement
class	DefinePeriodicBoundariesAlgo
class	AddKnownsToLinearSystemAlgo
class	CalculateProfile
	Samples image data surrounding mesh generated from segmentation. More...

Typedefs
typedef LockingHandle < SearchGridT < SCIRun::index_type > >	SearchGridHandle

Enumerations
enum	{   UNKNOWN =0, UNSTRUCTURED =1, STRUCTURED =2, IRREGULAR =4,   REGULAR =8 }

Functions
bool	ConvertHexVolToTetVolV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
bool	ConvertLatVolToTetVolV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
bool	StructuredCreateMeshFromNrrdAlgo (AlgoBase *algo, FieldHandle &fHandle, NrrdDataHandle pointsH, size_type idim, size_type jdim, size_type kdim)
bool	UnstructuredCreateMeshFromNrrdAlgo (AlgoBase *algo, FieldHandle &fHandle, NrrdDataHandle pointsH, NrrdDataHandle connectH, size_type nconnections, int which)
template<class DATA >
bool	DilateFieldDataNodeV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
template<class DATA >
bool	DilateFieldDataElemV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
template<class DATA >
bool	ErodeFieldDataNodeV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
template<class DATA >
bool	ErodeFieldDataElemV (AlgoBase *algo, FieldHandle input, FieldHandle &output)
bool	find_second_closest_elem (VMesh *tsm, SearchGridHandle elem_grid, double &rdist, Point &rloc, VMesh::coords_type &rcoords, VMesh::Elem::index_type &relem, const Point &p, VMesh::Elem::index_type &qelem, const Point &qloc, const Vector &pqdir, double pqdist, double diffdist)
bool	RefineMeshTetVolAlgoV (AlgoBase *algo, FieldHandle input, FieldHandle &output, std::string select, double isoval)
bool	RefineMeshCurveAlgoV (AlgoBase *algo, FieldHandle input, FieldHandle &output, std::string select, double isoval)
bool	RefineMeshTriSurfAlgoV (AlgoBase *algo, FieldHandle input, FieldHandle &output, std::string select, double isoval)
void	CleanupStreamLinePoints (const std::vector< Point > &input, std::vector< Point > &output, double e2)
bool	GenerateEdgeProjection (VMesh *vmesh, VMesh::Node::index_type start_node, Vector normal, Vector axis, double maxdist, VMesh::Node::index_type final_node, Point &fpoint, double &cum_dist)
bool	operator== (const LinkElement &s1, const LinkElement &s2)
bool	operator< (const LinkElement &s1, const LinkElement &s2)

Variables
int	tet_permute_table [15][4]
int	tri_permute_table [7][3]

Detailed Description

Datatypes that the algorithm uses.

For mapping matrices.

Class definition of this one.

Base class for algorithm for Windows support

Need to find out what type of field we are dealing with

STL classes needed

Todo:

: this was used by the TracePoints module, which

Typedef Documentation

typedef LockingHandle<SearchGridT<SCIRun::index_type> > SearchGridHandle

Enumeration Type Documentation

anonymous enum

Enumerator
UNKNOWN
UNSTRUCTURED
STRUCTURED
IRREGULAR
REGULAR

Function Documentation

void SCIRunAlgo::CleanupStreamLinePoints	(	const std::vector< Point > &	input,
		std::vector< Point > &	output,
		double	e2
	)

bool ConvertHexVolToTetVolV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

Make sure that get_neighbors works with elements

For checker board ordering

Add one type of ordering

Add the other type of ordering

Make sure that get_neighbors works with elements

For checker board ordering

Add one type of ordering

Add the other type of ordering

bool ConvertLatVolToTetVolV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

bool DilateFieldDataElemV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

Create output field

Create output field

bool DilateFieldDataNodeV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

Create output field

Create output field

bool ErodeFieldDataElemV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

Create output field

Create output field

bool ErodeFieldDataNodeV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output
	)

Create output field

Create output field

bool SCIRunAlgo::find_second_closest_elem	(	VMesh *	tsm,
		SearchGridHandle	elem_grid,
		double &	rdist,
		Point &	rloc,
		VMesh::coords_type &	rcoords,
		VMesh::Elem::index_type &	relem,
		const Point &	p,
		VMesh::Elem::index_type &	qelem,
		const Point &	qloc,
		const Vector &	pqdir,
		double	pqdist,
		double	diffdist
	)

If there are no elements we cannot find the closest one

We need to do a full shell without any elements that are closer to make sure there no closer elements in neighboring searchgrid cells

bool SCISHARE GenerateEdgeProjection	(	VMesh *	vmesh,
		VMesh::Node::index_type	start_node,
		Vector	normal,
		Vector	axis,
		double	maxdist,
		VMesh::Node::index_type	final_node,
		Point &	fpoint,
		double &	cum_dist
	)

bool SCIRunAlgo::operator< ( const LinkElement &  s1, const LinkElement &  s2  )

inline

bool SCIRunAlgo::operator== ( const LinkElement &  s1, const LinkElement &  s2  )

inline

bool SCIRunAlgo::RefineMeshCurveAlgoV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output,
		std::string	select,
		double	isoval
	)

Obtain information on what type of input field we have

Alter the input so it will become a QuadSurf

bool SCIRunAlgo::RefineMeshTetVolAlgoV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output,
		std::string	select,
		double	isoval
	)

Obtain information on what type of input field we have

Alter the input so it will become a tetvol

Create the output field

bool SCIRunAlgo::RefineMeshTriSurfAlgoV	(	AlgoBase *	algo,
		FieldHandle	input,
		FieldHandle &	output,
		std::string	select,
		double	isoval
	)

Obtain information on what type of input field we have

Alter the input so it will become a QuadSurf

bool SCIRunAlgo::StructuredCreateMeshFromNrrdAlgo	(	AlgoBase *	algo,
		FieldHandle &	fHandle,
		NrrdDataHandle	pointsH,
		size_type	idim,
		size_type	jdim,
		size_type	kdim
	)

bool SCIRunAlgo::UnstructuredCreateMeshFromNrrdAlgo	(	AlgoBase *	algo,
		FieldHandle &	fHandle,
		NrrdDataHandle	pointsH,
		NrrdDataHandle	connectH,
		size_type	nconnections,
		int	which
	)

Variable Documentation

int tet_permute_table[15][4]

Initial value:

= {
  { 0, 0, 0, 0 }, 
  { 3, 0, 2, 1 }, 
  { 2, 3, 0, 1 }, 
  { 0, 1, 2, 3 }, 
  { 1, 2, 0, 3 }, 
  { 0, 2, 3, 1 }, 
  { 0, 3, 1, 2 }, 
  { 0, 1, 2, 3 }, 
  { 0, 1, 2, 3 }, 
  { 2, 1, 3, 0 }, 
  { 3, 1, 0, 2 }, 
  { 1, 2, 0, 3 }, 
  { 3, 2, 1, 0 }, 
  { 2, 3, 0, 1 }, 
  { 3, 0, 2, 1 }, 
}

int tri_permute_table[7][3]

Initial value:

= {
  { 0, 0, 0 }, 
  { 2, 0, 1 }, 
  { 1, 2, 0 }, 
  { 0, 1, 2 }, 
  { 0, 1, 2 }, 
  { 1, 2, 0 }, 
  { 2, 0, 1 }, 
}