/trunk/src Developers: mjc

Login name:
mjc
Total Commits:
2496 (10.3%)
Lines of Code:
80853 (10.0%)
Most Recent Commit:
2005-12-13 09:44

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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 2496 (100.0%) 80853 (100.0%) 32.3
Core/Datatypes/ 315 (12.6%) 23990 (29.7%) 76.1
Core/Basis/ 146 (5.8%) 8192 (10.1%) 56.1
Dataflow/XML/ 447 (17.9%) 5657 (7.0%) 12.6
Packages/MatlabInterface/Dataflow/XML/ 41 (1.6%) 4324 (5.3%) 105.4
Dataflow/Modules/Fields/ 215 (8.6%) 3849 (4.8%) 17.9
StandAlone/convert/ 100 (4.0%) 3164 (3.9%) 31.6
Packages/Teem/Dataflow/XML/ 258 (10.3%) 3007 (3.7%) 11.6
Dataflow/Network/ 34 (1.4%) 2422 (3.0%) 71.2
Packages/VS/nets/ 13 (0.5%) 2069 (2.6%) 159.1
nets/Modules/FieldsData/ 16 (0.6%) 1560 (1.9%) 97.5
Packages/VS/Dataflow/Modules/Render/ 15 (0.6%) 1499 (1.9%) 99.9
Core/XMLUtil/ 17 (0.7%) 1497 (1.9%) 88.0
Packages/BioPSE/Dataflow/XML/ 129 (5.2%) 1317 (1.6%) 10.2
Dataflow/Modules/Render/ 13 (0.5%) 1101 (1.4%) 84.6
Packages/Teem/nets/PowerApps/ 2 (0.1%) 1079 (1.3%) 539.5
Packages/VS/Dataflow/Modules/Fields/ 9 (0.4%) 1063 (1.3%) 118.1
Core/Volume/ 18 (0.7%) 1051 (1.3%) 58.3
StandAlone/utils/ 40 (1.6%) 1017 (1.3%) 25.4
Dataflow/GUI/ 37 (1.5%) 1015 (1.3%) 27.4
Packages/BioPSE/Dataflow/Modules/Forward/ 56 (2.2%) 918 (1.1%) 16.3
Packages/Teem/Dataflow/Modules/Converters/ 23 (0.9%) 915 (1.1%) 39.7
Core/Util/ 32 (1.3%) 824 (1.0%) 25.7
Core/Algorithms/Visualization/ 52 (2.1%) 808 (1.0%) 15.5
Core/Thread/ 6 (0.2%) 771 (1.0%) 128.5
/ 9 (0.4%) 727 (0.9%) 80.7
nets/Modules/Volume/ 6 (0.2%) 596 (0.7%) 99.3
Packages/VS/Dataflow/GUI/ 13 (0.5%) 558 (0.7%) 42.9
Packages/Teem/Dataflow/Modules/NrrdData/ 9 (0.4%) 495 (0.6%) 55.0
nets/Modules/FieldsOther/ 3 (0.1%) 418 (0.5%) 139.3
Dataflow/Modules/Visualization/ 35 (1.4%) 344 (0.4%) 9.8
Core/Containers/ 2 (0.1%) 293 (0.4%) 146.5
Dataflow/Modules/Math/ 18 (0.7%) 280 (0.3%) 15.5
Dataflow/Modules/Time/ 3 (0.1%) 268 (0.3%) 89.3
Packages/VS/Dataflow/XML/ 9 (0.4%) 263 (0.3%) 29.2
Core/Services/ 14 (0.6%) 247 (0.3%) 17.6
Core/GUI/ 8 (0.3%) 243 (0.3%) 30.3
Packages/VS/Dataflow/Modules/DataFlow/ 7 (0.3%) 239 (0.3%) 34.1
nets/Modules/FieldsCreate/ 1 (0.0%) 226 (0.3%) 226.0
Packages/BioPSE/Core/Algorithms/NumApproximation/ 14 (0.6%) 208 (0.3%) 14.8
Dataflow/Ports/ 3 (0.1%) 203 (0.3%) 67.6
Core/Persistent/ 12 (0.5%) 195 (0.2%) 16.2
Core/Geom/ 19 (0.8%) 184 (0.2%) 9.6
Packages/Teem/Dataflow/Modules/Unu/ 47 (1.9%) 183 (0.2%) 3.8
Packages/VS/Standalone/src/ 7 (0.3%) 167 (0.2%) 23.8
Packages/Teem/Dataflow/GUI/ 10 (0.4%) 165 (0.2%) 16.5
nets/Modules/Math/ 1 (0.0%) 156 (0.2%) 156.0
Core/ImportExport/ 1 (0.0%) 133 (0.2%) 133.0
Packages/Teem/Dataflow/Modules/DataIO/ 10 (0.4%) 94 (0.1%) 9.4
Packages/BioPSE/Core/Datatypes/ 8 (0.3%) 77 (0.1%) 9.6
Core/ImportExport/Field/ 3 (0.1%) 68 (0.1%) 22.6
Packages/BioPSE/Dataflow/Modules/Inverse/ 9 (0.4%) 66 (0.1%) 7.3
Packages/BioPSE/Dataflow/Modules/Modeling/ 12 (0.5%) 65 (0.1%) 5.4
main/ 4 (0.2%) 64 (0.1%) 16.0
Packages/BioPSE/Dataflow/Modules/NeuroFEM/ 4 (0.2%) 60 (0.1%) 15.0
Core/TkExtensions/ 1 (0.0%) 55 (0.1%) 55.0
Core/Geometry/ 12 (0.5%) 48 (0.1%) 4.0
Dataflow/Modules/DataIO/ 4 (0.2%) 41 (0.1%) 10.2
Packages/BioPSE/Dataflow/Modules/LeadField/ 6 (0.2%) 38 (0.0%) 6.3
Packages/BioPSE/StandAlone/convert/ 9 (0.4%) 35 (0.0%) 3.8
Core/Math/ 1 (0.0%) 32 (0.0%) 32.0
Packages/ModelCreation/Core/Fields/ 11 (0.4%) 31 (0.0%) 2.8
Dataflow/Modules/Bundle/ 7 (0.3%) 21 (0.0%) 3.0
Packages/Teem/Dataflow/Modules/Tend/ 26 (1.0%) 17 (0.0%) 0.6
Core/GuiInterface/ 6 (0.2%) 17 (0.0%) 2.8
Packages/BioPSE/Dataflow/Modules/Visualization/ 5 (0.2%) 16 (0.0%) 3.2
Core/ImportExport/Matrix/ 2 (0.1%) 13 (0.0%) 6.5
Core/Algorithms/Geometry/ 5 (0.2%) 13 (0.0%) 2.6
scripts/ 4 (0.2%) 11 (0.0%) 2.7
Packages/Fusion/Dataflow/Modules/Fields/ 2 (0.1%) 10 (0.0%) 5.0
Packages/BioPSE/nets/ 4 (0.2%) 7 (0.0%) 1.7
testprograms/Thread/ 2 (0.1%) 6 (0.0%) 3.0
Packages/ModelCreation/Core/Algorithms/ 1 (0.0%) 6 (0.0%) 6.0
Dataflow/Constraints/ 4 (0.2%) 6 (0.0%) 1.5
Packages/VDT/StandAlone/convert/ 2 (0.1%) 4 (0.0%) 2.0
Core/TCLThread/ 1 (0.0%) 4 (0.0%) 4.0
Core/Init/ 2 (0.1%) 4 (0.0%) 2.0
Core/ImportExport/ColorMap/ 2 (0.1%) 4 (0.0%) 2.0
Packages/Teem/StandAlone/convert/ 5 (0.2%) 3 (0.0%) 0.6
Packages/VS/Dataflow/Modules/ 2 (0.1%) 2 (0.0%) 1.0
Packages/PCS/Dataflow/Modules/Visualization/ 2 (0.1%) 2 (0.0%) 1.0
Packages/MatlabInterface/Dataflow/Modules/DataIO/ 3 (0.1%) 2 (0.0%) 0.6
Packages/Insight/Dataflow/Modules/Converters/ 2 (0.1%) 2 (0.0%) 1.0
Dataflow/Resources/ 3 (0.1%) 2 (0.0%) 0.6
Core/Algorithms/Fields/ 2 (0.1%) 2 (0.0%) 1.0
Dataflow/Widgets/ 1 (0.0%) 1 (0.0%) 1.0
Dataflow/Modules/ 1 (0.0%) 1 (0.0%) 1.0
Core/SystemCall/ 2 (0.1%) 1 (0.0%) 0.5
Core/2d/ 4 (0.2%) 1 (0.0%) 0.2
Core/ 1 (0.0%) 1 (0.0%) 1.0
Packages/Teem/Dataflow/Modules/Segmentation/ 1 (0.0%) 0 (0.0%) 0.0
Packages/MatlabInterface/share/ 2 (0.1%) 0 (0.0%) 0.0
Packages/DDDAS/Dataflow/Modules/DataIO/ 6 (0.2%) 0 (0.0%) 0.0
Packages/DDDAS/Core/Datatypes/ 2 (0.1%) 0 (0.0%) 0.0
Core/Bundle/ 3 (0.1%) 0 (0.0%) 0.0

Activity of mjc

Most Recent Commits

mjc 2005-12-13 09:44 Rev.: 32823

fix dynamic compilation

172 lines of code changed in 1 file:

  • Packages/BioPSE/Dataflow/Modules/Forward: SetupFEMatrix.h (+172 -162)
mjc 2005-12-13 09:32 Rev.: 32822

fix compiler warnings, some readabilty improvements

67 lines of code changed in 4 files:

  • Packages/BioPSE/Core/Algorithms/NumApproximation: BuildFEMatrix.h (+60 -37)
  • Packages/BioPSE/Dataflow/Modules/Forward: SetupFEMatrix.h (+1 -1)
  • testprograms/Thread: threadexit.cc (+6 -4)
mjc 2005-12-12 18:07 Rev.: 32812

add parameter for get_normals, so that volume meshes can know which face needs the normal, add normals for the unit element faces where applicable, fix hex vol face normal calculation

175 lines of code changed in 37 files:

  • Core/Algorithms/Visualization: RenderField.h (+9 -8)
  • Core/Basis: HexTrilinearLgn.cc (+8 -2), HexTrilinearLgn.h (+24 -16), PrismLinearLgn.cc (+8), PrismLinearLgn.h (+25 -16), QuadBilinearLgn.cc (+5), QuadBilinearLgn.h (+3 -1), TetLinearLgn.cc (+13 -3), TetLinearLgn.h (+25 -16), TriLinearLgn.cc (new), TriLinearLgn.h (+3 -1)
  • Core/Datatypes: CurveMesh.h (new), HexVolMesh.h (new), ImageMesh.h (new), LatVolMesh.h (new), MaskedLatVolMesh.h (+2 -1), PointCloudMesh.h (+2 -1), PrismVolMesh.h (+2 -1), QuadSurfMesh.h (new), ScanlineMesh.h (+2 -1), StructQuadSurfMesh.h (new), TetVolMesh.h (+2 -1), TriSurfMesh.h (new)
mjc 2005-12-12 18:06 Rev.: 32811

fix compile, use ASSERT not assert

5 lines of code changed in 1 file:

  • Packages/BioPSE/Core/Algorithms/NumApproximation: BuildFEMatrix.h (+5 -5)
mjc 2005-12-12 09:35 Rev.: 32800

fix compile, warnings

13 lines of code changed in 2 files:

  • Core/Basis: Locate.h (+9 -8)
  • StandAlone/utils: TestBasis.cc (+4 -4)
mjc 2005-12-09 12:40 Rev.: 32784

add support for another format

0 lines of code changed in 2 files:

  • StandAlone/convert: UCSD_HO_edge_sfToHexVol.cc (new)
mjc 2005-12-07 14:52 Rev.: 32753

make inside test use the basis tests for inside

2 lines of code changed in 1 file:

  • Core/Datatypes: PrismVolMesh.h (+2 -31)
mjc 2005-12-07 14:51 Rev.: 32752

enable rendering faces with normals when we can calculate them in higher order meshes

7 lines of code changed in 1 file:

  • Core/Datatypes: HexVolMesh.h (+7 -1)
mjc 2005-12-07 10:41 Rev.: 32747

fix edge mapping, and loading

12 lines of code changed in 2 files:

  • Core/Datatypes: HexVolMesh.h (+10 -8)
  • StandAlone/convert: UCSD_HO_edge_sfToHexVol.cc (+2)
mjc 2005-12-06 09:05 Rev.: 32737

fix compile, clean up warnings

2 lines of code changed in 1 file:

  • StandAlone/utils: UnitElementMesh.cc (+2 -1)
mjc 2005-12-05 15:18 Rev.: 32723

fix PrismVolMesh interface, and approx methods for rendering

136 lines of code changed in 6 files:

  • Core/Basis: PrismLinearLgn.cc (+4 -4), PrismLinearLgn.h (+7 -7)
  • Core/Datatypes: PrismVolMesh.h (+31 -23)
  • StandAlone/convert: UCSD_HO_edge_sfToHexVol.cc (+4 -1)
  • StandAlone/utils: SinglePrism.cc (new 86), sub.mk (+4)
mjc 2005-12-03 02:14 Rev.: 32716

fix unresolved dependency on Core/Bundle

0 lines of code changed in 2 files:

  • Dataflow/Modules/Render: sub.mk (changed)
mjc 2005-12-03 02:13 Rev.: 32715

remove the second dlopen call apparently for ppl with DYLD_LIBRARY_PATH set. Calling dlopen the second time breaks error reporting, as you only get one chance to call dlerror()

0 lines of code changed in 2 files:

  • Core/Util: soloader.cc (new)
mjc 2005-12-02 02:23 Rev.: 32697

completely revert commit 32690, as it broke all of Uintah

11039 lines of code changed in 629 files:

  • aclocal.m4 (-4), configVars.mk.in (+2 -5), configure (+23 -601), configure.ac (+19 -73)
  • Core/Services: ServiceDB.cc (new), ServiceNode.cc (new), ServiceNode.h (new), sub.mk (+1 -1)
  • Core/Util: RWS.cc (new), RWS.h (-6), XMLParser.cc (new 244), XMLParser.h (new 172), sub.mk (+2 -1)
  • Core/Volume: sub.mk (+1)
  • Core/XMLUtil: SimpleErrorHandler.cc (new 100), SimpleErrorHandler.h (new 103), StrX.cc (new 42), StrX.h (new 104), XMLUtil.cc (+496 -486), XMLUtil.h (+147 -14), sub.mk (new)
  • Dataflow/GUI: ComponentWizard.tcl (+222 -71)
  • Dataflow/Modules/Fields: sub.mk (+3 -2)
  • Dataflow/Modules/Math: sub.mk (new)
  • Dataflow/Network: ComponentNode.cc (+1116 -242), ComponentNode.h (+189 -41), GenFiles.cc (new), GenFiles.h (new), Module.cc (+15 -15), NetworkEditor.cc (+31 -24), PackageDB.cc (+146 -60), PackageDB.h (+63 -66), PackageDBHandler.cc (new 160), PackageDBHandler.h (new 146), sub.mk (+8 -8)
  • Dataflow/Resources: sub.mk (new)
  • Dataflow/XML: AddLight.xml (+10 -5), AppendMatrix.xml (new), ApplyMappingMatrix.xml (new), AttractNormals.xml (new), BuildMappingMatrix.xml (new), BuildNoise.xml (+2), BuildTransform.xml (new), BundleGetBundle.xml (+12 -7), BundleGetColorMap.xml (new), BundleGetColorMap2.xml (+12 -7), BundleGetField.xml (new), BundleGetMatrix.xml (+16 -11), BundleGetNrrd.xml (+12 -6), BundleGetPath.xml (+12 -6), BundleGetString.xml (new), BundleInfo.xml (new), BundleMerge.xml (+13 -5), BundleReader.xml (new), BundleSetBundle.xml (new), BundleSetColorMap.xml (new), BundleSetColorMap2.xml (new), BundleSetField.xml (new), BundleSetMatrix.xml (+13 -7), BundleSetNrrd.xml (new), BundleSetPath.xml (+9 -3), BundleSetString.xml (new), BundleWriter.xml (new), Camera.xml (new), CastMLVtoHV.xml (new), CastMatrix.xml (+3 -1), CastTVtoMLV.xml (+18 -9), Centroids.xml (+19 -18), ChangeCoordinates.xml (+14 -3), ChangeFieldBasis.xml (new), ChangeFieldBounds.xml (new), ChangeFieldDataType.xml (+41 -36), ChooseColorMap.xml (new), ChooseField.xml (+12 -8), ChooseMatrix.xml (new), ClipByFunction.xml (new), ClipField.xml (new), ClipLattice.xml (+2), ColorMap2Reader.xml (+3 -4), ColorMap2Writer.xml (+2), ColorMapReader.xml (new), ColorMapWriter.xml (new), Coregister.xml (+3 -4), CreateMatrix.xml (+13 -2), CreateMesh.xml (new), CreateString.xml (+18 -3), CubitInterface.xml (+2), DirectMapping.xml (+13 -27), EditColorMap.xml (new), EditColorMap2D.xml (new), EditPath.xml (new), ErrorMetric.xml (new), FieldBoundary.xml (new), FieldFrenet.xml (new), FieldInfo.xml (new), FieldMeasures.xml (+29 -19), FieldReader.xml (+4 -15), FieldSetProperty.xml (new), FieldSlicer.xml (+40 -31), FieldSubSample.xml (new), FieldWriter.xml (+4 -9), GatherFields.xml (new), GenAxes.xml (new), GenClock.xml (+23 -19), GenStandardColorMaps.xml (+39 -39), GenTitle.xml (+21 -16), GetFileName.xml (new), Gradient.xml (+21 -22), HexToTet.xml (new), IsoClip.xml (new), Isosurface.xml (+101 -104), JoinStrings.xml (new), LinAlgBinary.xml (new), LinAlgUnary.xml (new), LinearAlgebra.xml (+23 -18), ManageFieldData.xml (new), ManageFieldMesh.xml (new), MapDataToMeshCoord.xml (new), MappingMatrixToMaskVector.xml (new), MaskLatVolWithTriSurf.xml (+2 -9), MaskLattice.xml (new), MaskVectorToMappingMatrix.xml (+8 -2), MatrixInfo.xml (+16 -8), MatrixReader.xml (+4 -17), MatrixSelectVector.xml (new), MatrixWriter.xml (+5 -13), MinNormLeastSq.xml (+14 -10), MoveElemToNode.xml (+27 -29), MoveNodeToElem.xml (new), NodeGradient.xml (+13 -11), NrrdTextureBuilder.xml (+22 -20), Painter.xml (+13 -4), PathReader.xml (+4 -15), PathWriter.xml (+4 -9), PlanarTransformField.xml (new), PointLatticeMap.xml (new), Probe.xml (+20 -18), QuadToTri.xml (+16 -16), RefineTetVol.xml (+4 -4), ReplaceScalarDataValue.xml (+9 -4), RescaleColorMap.xml (new), SampleField.xml (new), SampleLattice.xml (+15 -14), SamplePlane.xml (+20 -20), SampleStructHex.xml (+32 -33), ScalarFieldStats.xml (+14 -9), ScaleFieldData.xml (+10 -8), SeedPoints.xml (+2 -3), SelectField.xml (new), SetProperty.xml (new), ShowColorMap.xml (+3 -1), ShowField.xml (new), ShowMatrix.xml (+2), ShowString.xml (new), SolveMatrix.xml (new), SplitFileName.xml (+9 -5), SprintfMatrix.xml (new), SprintfString.xml (+16 -4), StreamLines.xml (+77 -61), StringInfo.xml (new), Submatrix.xml (+14 -10), SynchronizeGeometry.xml (new), TetMesher.xml (new), TetVol2QuadraticTetVol.xml (new 144), TextureBuilder.xml (+6), TimeControls.xml (+11 -6), ToStructured.xml (new), TransformData.xml (+32 -32), TransformData2.xml (+30 -30), TransformData3.xml (new), TransformField.xml (+8 -6), TransformMesh.xml (new), Unstructure.xml (+18 -16), VectorMagnitude.xml (new), ViewSlices.xml (+5 -4), Viewer.xml (new), VolumeSlicer.xml (+23 -15), VolumeVisualizer.xml (+32 -26), component.dtd (new)
  • Packages/BioPSE/Dataflow/XML: AnisoSphereModel.xml (+59 -50), ApplyFEMCurrentSource.xml (+43 -38), ApplyFEMElectrodeSource.xml (+22 -25), ApplyFEMVoltageSource.xml (new), AssignLeadFieldSources.xml (+2), AttributeTrf.xml (+6 -3), BuildElemLeadField.xml (new), BuildFEMatrixQuadratic.xml (+8), BuildMisfitField.xml (+2), ComputeCurrent.xml (+9 -6), ConductivitySearch.xml (new), ConfigureElectrode.xml (+2 -1), ConfigureWireElectrode.xml (new), CreateDisAnisoSpheres.xml (new), DipoleInAnisoSpheres.xml (new), DipoleMatrixSourceRHSQuadratic.xml (new), DipoleSearch.xml (+2), EITAnalyticSolution.xml (new), ElectrodeManager.xml (+8 -10), ExtractSepSurfs.xml (+3 -2), ExtractSingleSurface.xml (new), ForwardIPM.xml (+4 -4), ForwardMagneticField.xml (+13 -15), IndicesToTensors.xml (new), InsertElectrodes.xml (+2 -1), InsertVoltageSource.xml (new), IntegrateCurrent.xml (+4 -2), InverseIPM.xml (+4 -4), ModifyConductivities.xml (+18 -14), RawToDenseMatrix.xml (new), SegFieldOps.xml (+3 -4), SegFieldToLatVol.xml (+3 -4), SepSurfToQuadSurf.xml (new), SetEITGround.xml (new), SetupBEMatrix.xml (+59 -53), SetupFEMatrix.xml (new), ShowDipoles.xml (new), ShowLeads.xml (new), TSVD.xml (+6 -3), TensorsToIndices.xml (new), Tikhonov.xml (+30 -28), TikhonovSVD.xml (new), TrigCurrentPattern.xml (+6 -5)
  • Packages/BioPSE/StandAlone/convert: sub.mk (+1 -1)
  • Packages/MatlabInterface/Dataflow/Modules/DataIO: sub.mk (+1 -1)
  • Packages/MatlabInterface/Dataflow/XML: Matlab.xml (new), MatlabBundle.xml (new), MatlabBundlesReader.xml (new), MatlabBundlesWriter.xml (new), MatlabColorMapsReader.xml (new), MatlabDataReader.xml (+293 -359), MatlabDataWriter.xml (+134 -110), MatlabFieldsReader.xml (new), MatlabFieldsWriter.xml (new), MatlabMatricesReader.xml (new), MatlabMatricesWriter.xml (+115 -103), MatlabNrrdsReader.xml (new), MatlabNrrdsWriter.xml (+115 -103)
  • Packages/Teem/Dataflow/XML: AnalyzeNrrdReader.xml (new), ChooseNrrd.xml (+16 -13), ColorMap2ToNrrd.xml (+8 -4), ColorMapToNrrd.xml (new), DicomNrrdReader.xml (new), GageProbe.xml (+14 -30), ImageExporter.xml (+10 -5), ImageImporter.xml (new), MRITissueClassifier.xml (new), MatrixToNrrd.xml (+13 -21), NrrdGradient.xml (+13 -4), NrrdInfo.xml (+14 -5), NrrdReader.xml (new), NrrdSelectTime.xml (new), NrrdSetProperty.xml (new), NrrdSetupTexture.xml (+19 -10), NrrdToColorMap2.xml (+9 -3), NrrdToField.xml (+71 -60), NrrdToMatrix.xml (new), NrrdWriter.xml (+3 -2), TendAnhist.xml (new), TendAnplot.xml (+36 -26), TendAnscale.xml (new), TendAnvol.xml (new), TendBmat.xml (+11 -11), TendEpireg.xml (+45 -43), TendEstim.xml (+22 -22), TendEval.xml (new), TendEvalAdd.xml (+18 -9), TendEvalClamp.xml (new), TendEvalPow.xml (+6 -6), TendEvec.xml (new), TendEvecRGB.xml (new), TendEvq.xml (new), TendExpand.xml (new), TendFiber.xml (new), TendMake.xml (+20 -11), TendNorm.xml (new), TendPoint.xml (new), TendSatin.xml (new), TendShrink.xml (+17 -8), TendSim.xml (+20 -12), TendSlice.xml (new), TendSten.xml (+12 -3), Unu1op.xml (+25 -19), Unu2op.xml (+12 -3), Unu3op.xml (new), UnuAxdelete.xml (+22 -16), UnuAxinfo.xml (new), UnuAxinsert.xml (+22 -15), UnuAxmerge.xml (new), UnuAxsplit.xml (new), UnuCCadj.xml (+25 -16), UnuCCfind.xml (new), UnuCCmerge.xml (+38 -28), UnuCCsettle.xml (+13 -4), UnuCmedian.xml (new), UnuConvert.xml (+6 -5), UnuCrop.xml (new), UnuDhisto.xml (new), UnuFlip.xml (+15 -6), UnuGamma.xml (+27 -20), UnuHeq.xml (+33 -26), UnuHistax.xml (+22 -13), UnuHisto.xml (new), UnuImap.xml (+44 -37), UnuInset.xml (+20 -13), UnuJhisto.xml (new), UnuJoin.xml (+4 -2), UnuLut.xml (+37 -29), UnuMake.xml (+53 -53), UnuMinmax.xml (+13 -8), UnuPad.xml (+5 -3), UnuPermute.xml (+2), UnuProject.xml (+10 -9), UnuQuantize.xml (new), UnuResample.xml (new), UnuReshape.xml (new), UnuRmap.xml (new), UnuRmapN.xml (+36 -27), UnuSave.xml (new), UnuShuffle.xml (new), UnuSlice.xml (new), UnuSplice.xml (new), UnuSwap.xml (new), UnuUnquantize.xml (+12 -3)
  • Packages/Teem/StandAlone/convert: sub.mk (+1 -1)
  • StandAlone/convert: sub.mk (+1 -1)
mjc 2005-12-01 15:19 Rev.: 32690

removal of xerces, replaced with libxml2, turn on validaton for component loading, fix all invalid xml

8329 lines of code changed in 325 files:

  • aclocal.m4 (+4), configVars.mk.in (+5 -2), configure (+601 -23), configure.ac (+73 -19)
  • Core/Services: ServiceDB.cc (+1 -18), ServiceNode.cc (+72 -122), ServiceNode.h (+10 -22), sub.mk (+1 -1)
  • Core/Util: RWS.cc (+52 -18), RWS.h (+6), XMLParser.cc (del), XMLParser.h (del), sub.mk (+1 -2)
  • Core/Volume: sub.mk (-1)
  • Core/XMLUtil: SimpleErrorHandler.cc (del), SimpleErrorHandler.h (del), StrX.cc (del), StrX.h (del), XMLUtil.cc (+486 -496), XMLUtil.h (+14 -147), sub.mk (+2 -3)
  • Dataflow/GUI: ComponentWizard.tcl (+71 -222)
  • Dataflow/Modules/Fields: sub.mk (+2 -3)
  • Dataflow/Modules/Math: sub.mk (+2 -2)
  • Dataflow/Network: ComponentNode.cc (+242 -1116), ComponentNode.h (+41 -189), GenFiles.cc (+27 -24), GenFiles.h (+1 -1), Module.cc (+15 -15), NetworkEditor.cc (+24 -31), PackageDB.cc (+60 -146), PackageDB.h (+66 -63), PackageDBHandler.cc (del), PackageDBHandler.h (del), sub.mk (+8 -8)
  • Dataflow/Resources: sub.mk (+1 -1)
  • Dataflow/XML: AddLight.xml (+5 -10), AppendMatrix.xml (+8 -9), ApplyMappingMatrix.xml (+4 -7), AttractNormals.xml (+20 -21), BuildMappingMatrix.xml (+42 -37), BuildNoise.xml (-2), BuildTransform.xml (-2), BundleGetBundle.xml (+7 -12), BundleGetColorMap.xml (+7 -13), BundleGetColorMap2.xml (+7 -12), BundleGetField.xml (+7 -12), BundleGetMatrix.xml (+11 -16), BundleGetNrrd.xml (+6 -12), BundleGetPath.xml (+6 -12), BundleGetString.xml (+7 -12), BundleInfo.xml (+3 -9), BundleMerge.xml (+5 -13), BundleReader.xml (+5 -18), BundleSetBundle.xml (+7 -13), BundleSetColorMap.xml (+3 -10), BundleSetColorMap2.xml (+7 -14), BundleSetField.xml (+7 -14), BundleSetMatrix.xml (+7 -13), BundleSetNrrd.xml (+7 -13), BundleSetPath.xml (+3 -9), BundleSetString.xml (+7 -13), BundleWriter.xml (+6 -21), Camera.xml (+5 -6), CastMLVtoHV.xml (+3 -8), CastMatrix.xml (+1 -3), CastTVtoMLV.xml (+9 -18), Centroids.xml (+18 -19), ChangeCoordinates.xml (+3 -14), ChangeFieldBasis.xml (+27 -36), ChangeFieldBounds.xml (+31 -41), ChangeFieldDataType.xml (+36 -41), ChooseColorMap.xml (+21 -25), ChooseField.xml (+8 -12), ChooseMatrix.xml (+19 -21), ClipByFunction.xml (+51 -51), ClipField.xml (+38 -37), ClipLattice.xml (-2), ColorMap2Reader.xml (+4 -3), ColorMap2Writer.xml (-2), ColorMapReader.xml (+18 -4), ColorMapWriter.xml (+7 -3), Coregister.xml (+4 -3), CreateMatrix.xml (+2 -13), CreateMesh.xml (+12 -15), CreateString.xml (+3 -18), CubitInterface.xml (-2), DirectMapping.xml (+27 -13), EditColorMap.xml (-2), EditColorMap2D.xml (+23 -17), EditPath.xml (+18 -13), ErrorMetric.xml (+3 -3), FieldBoundary.xml (+68 -62), FieldFrenet.xml (+17 -28), FieldInfo.xml (+24 -30), FieldMeasures.xml (+19 -29), FieldReader.xml (+15 -4), FieldSetProperty.xml (+10 -13), FieldSlicer.xml (+31 -40), FieldSubSample.xml (+27 -36), FieldWriter.xml (+9 -4), GatherFields.xml (+28 -34), GenAxes.xml (+9 -22), GenClock.xml (+19 -23), GenStandardColorMaps.xml (+39 -39), GenTitle.xml (+16 -21), GetFileName.xml (+1 -14), Gradient.xml (+22 -21), HexToTet.xml (+19 -20), IsoClip.xml (+61 -54), Isosurface.xml (+104 -101), JoinStrings.xml (+5 -10), LinAlgBinary.xml (+54 -60), LinAlgUnary.xml (+46 -51), LinearAlgebra.xml (+18 -23), ManageFieldData.xml (+25 -32), ManageFieldMesh.xml (+38 -36), MapDataToMeshCoord.xml (-2), MappingMatrixToMaskVector.xml (+1 -7), MaskLatVolWithTriSurf.xml (+9 -2), MaskLattice.xml (+18 -18), MaskVectorToMappingMatrix.xml (+2 -8), MatrixInfo.xml (+8 -16), MatrixReader.xml (+17 -4), MatrixSelectVector.xml (+5 -19), MatrixWriter.xml (+13 -5), MinNormLeastSq.xml (+10 -14), MoveElemToNode.xml (+29 -27), MoveNodeToElem.xml (+29 -26), NodeGradient.xml (+11 -13), NrrdTextureBuilder.xml (+20 -22), Painter.xml (+4 -13), PathReader.xml (+15 -4), PathWriter.xml (+9 -4), PlanarTransformField.xml (+6 -8), PointLatticeMap.xml (+4 -4), Probe.xml (+18 -20), QuadToTri.xml (+16 -16), RefineTetVol.xml (+4 -4), ReplaceScalarDataValue.xml (+4 -9), RescaleColorMap.xml (+24 -16), SampleField.xml (+59 -65), SampleLattice.xml (+14 -15), SamplePlane.xml (+20 -20), SampleStructHex.xml (+33 -32), ScalarFieldStats.xml (+9 -14), ScaleFieldData.xml (+8 -10), SeedPoints.xml (+3 -2), SelectField.xml (+3 -5), SetProperty.xml (+9 -12), ShowColorMap.xml (+1 -3), ShowField.xml (+132 -139), ShowMatrix.xml (-2), ShowString.xml (+2 -15), SolveMatrix.xml (+13 -16), SplitFileName.xml (+5 -9), SprintfMatrix.xml (+21 -31), SprintfString.xml (+4 -16), StreamLines.xml (+61 -77), StringInfo.xml (+1 -14), Submatrix.xml (+10 -14), SynchronizeGeometry.xml (+32 -47), TetMesher.xml (-2), TetVol2QuadraticTetVol.xml (del), TextureBuilder.xml (-6), TimeControls.xml (+6 -11), ToStructured.xml (+3 -7), TransformData.xml (+32 -32), TransformData2.xml (+30 -30), TransformData3.xml (+35 -36), TransformField.xml (+6 -8), TransformMesh.xml (+27 -25), Unstructure.xml (+16 -18), VectorMagnitude.xml (-2), ViewSlices.xml (+4 -5), Viewer.xml (+20 -23), VolumeSlicer.xml (+15 -23), VolumeVisualizer.xml (+26 -32), component.dtd (+8 -28)
  • Packages/BioPSE/Dataflow/XML: AnisoSphereModel.xml (+50 -59), ApplyFEMCurrentSource.xml (+38 -43), ApplyFEMElectrodeSource.xml (+25 -22), ApplyFEMVoltageSource.xml (+12 -13), AssignLeadFieldSources.xml (-2), AttributeTrf.xml (+3 -6), BuildElemLeadField.xml (-2), BuildFEMatrixQuadratic.xml (-8), BuildMisfitField.xml (-2), ComputeCurrent.xml (+6 -9), ConductivitySearch.xml (-2), ConfigureElectrode.xml (+1 -2), ConfigureWireElectrode.xml (+1 -2), CreateDisAnisoSpheres.xml (+95 -93), DipoleInAnisoSpheres.xml (+111 -116), DipoleMatrixSourceRHSQuadratic.xml (+5 -6), DipoleSearch.xml (-2), EITAnalyticSolution.xml (+9 -13), ElectrodeManager.xml (+10 -8), ExtractSepSurfs.xml (+2 -3), ExtractSingleSurface.xml (+4 -3), ForwardIPM.xml (+4 -4), ForwardMagneticField.xml (+15 -13), IndicesToTensors.xml (+9 -12), InsertElectrodes.xml (+1 -2), InsertVoltageSource.xml (+1 -2), IntegrateCurrent.xml (+2 -4), InverseIPM.xml (+4 -4), ModifyConductivities.xml (+14 -18), RawToDenseMatrix.xml (+7 -15), SegFieldOps.xml (+4 -3), SegFieldToLatVol.xml (+4 -3), SepSurfToQuadSurf.xml (+2 -3), SetEITGround.xml (+9 -12), SetupBEMatrix.xml (+53 -59), SetupFEMatrix.xml (+52 -61), ShowDipoles.xml (-6), ShowLeads.xml (+2 -13), TSVD.xml (+3 -6), TensorsToIndices.xml (+9 -12), Tikhonov.xml (+28 -30), TikhonovSVD.xml (+6 -7), TrigCurrentPattern.xml (+5 -6)
  • Packages/BioPSE/StandAlone/convert: sub.mk (+1 -1)
  • Packages/MatlabInterface/Dataflow/Modules/DataIO: sub.mk (+1 -1)
  • Packages/MatlabInterface/Dataflow/XML: Matlab.xml (+487 -340), MatlabBundle.xml (+244 -170), MatlabBundlesReader.xml (+93 -95), MatlabBundlesWriter.xml (+68 -89), MatlabColorMapsReader.xml (+80 -88), MatlabDataReader.xml (+359 -293), MatlabDataWriter.xml (+110 -134), MatlabFieldsReader.xml (+326 -264), MatlabFieldsWriter.xml (+87 -100), MatlabMatricesReader.xml (+144 -129), MatlabMatricesWriter.xml (+103 -115), MatlabNrrdsReader.xml (+93 -95), MatlabNrrdsWriter.xml (+103 -115)
  • Packages/Teem/Dataflow/XML: AnalyzeNrrdReader.xml (+27 -36), ChooseNrrd.xml (+13 -16), ColorMap2ToNrrd.xml (+4 -8), ColorMapToNrrd.xml (+3 -7), DicomNrrdReader.xml (+32 -39), GageProbe.xml (+30 -14), ImageExporter.xml (+5 -10), ImageImporter.xml (+6 -7), MRITissueClassifier.xml (+4 -8), MatrixToNrrd.xml (+21 -13), NrrdGradient.xml (+4 -13), NrrdInfo.xml (+5 -14), NrrdReader.xml (+6 -9), NrrdSelectTime.xml (+8 -7), NrrdSetProperty.xml (+10 -13), NrrdSetupTexture.xml (+10 -19), NrrdToColorMap2.xml (+3 -9), NrrdToField.xml (+60 -71), NrrdToMatrix.xml (+29 -21), NrrdWriter.xml (+2 -3), TendAnhist.xml (+3 -12), TendAnplot.xml (+26 -36), TendAnscale.xml (+12 -11), TendAnvol.xml (+22 -20), TendBmat.xml (+11 -11), TendEpireg.xml (+43 -45), TendEstim.xml (+22 -22), TendEval.xml (+6 -5), TendEvalAdd.xml (+9 -18), TendEvalClamp.xml (+10 -11), TendEvalPow.xml (+6 -6), TendEvec.xml (+6 -6), TendEvecRGB.xml (+15 -10), TendEvq.xml (+29 -40), TendExpand.xml (+18 -27), TendFiber.xml (+14 -12), TendMake.xml (+11 -20), TendNorm.xml (+18 -15), TendPoint.xml (+4 -14), TendSatin.xml (+27 -33), TendShrink.xml (+8 -17), TendSim.xml (+12 -20), TendSlice.xml (+8 -17), TendSten.xml (+3 -12), Unu1op.xml (+19 -25), Unu2op.xml (+3 -12), Unu3op.xml (+31 -38), UnuAxdelete.xml (+16 -22), UnuAxinfo.xml (+18 -13), UnuAxinsert.xml (+15 -22), UnuAxmerge.xml (+17 -24), UnuAxsplit.xml (+14 -20), UnuCCadj.xml (+16 -25), UnuCCfind.xml (+17 -22), UnuCCmerge.xml (+28 -38), UnuCCsettle.xml (+4 -13), UnuCmedian.xml (+12 -16), UnuConvert.xml (+5 -6), UnuCrop.xml (+6 -6), UnuDhisto.xml (+16 -24), UnuFlip.xml (+6 -15), UnuGamma.xml (+20 -27), UnuHeq.xml (+26 -33), UnuHistax.xml (+13 -22), UnuHisto.xml (+19 -26), UnuImap.xml (+37 -44), UnuInset.xml (+13 -20), UnuJhisto.xml (+32 -32), UnuJoin.xml (+2 -4), UnuLut.xml (+29 -37), UnuMake.xml (+53 -53), UnuMinmax.xml (+8 -13), UnuPad.xml (+3 -5), UnuPermute.xml (-2), UnuProject.xml (+9 -10), UnuQuantize.xml (+4 -6), UnuResample.xml (-2), UnuReshape.xml (+3 -12), UnuRmap.xml (+38 -45), UnuRmapN.xml (+27 -36), UnuSave.xml (+24 -37), UnuShuffle.xml (+13 -22), UnuSlice.xml (+3 -4), UnuSplice.xml (+15 -20), UnuSwap.xml (+9 -17), UnuUnquantize.xml (+3 -12)
  • Packages/Teem/StandAlone/convert: sub.mk (+1 -1)
  • StandAlone/convert: sub.mk (+1 -1)
mjc 2005-11-16 10:19 Rev.: 32563

dont render edges with vector -> color in a constant field unless we are a 1 dimensional mesh

7 lines of code changed in 1 file:

  • Core/Algorithms/Visualization: RenderField.h (+7)
mjc 2005-11-14 14:47 Rev.: 32538

depricate get_type_name

0 lines of code changed in 3 files:

  • Core/Datatypes: Mesh.cc (new), Mesh.h (-1)
mjc 2005-11-14 11:51 Rev.: 32536

replace int get_type_description argument with enum

66 lines of code changed in 5 files:

  • Core/Algorithms/Visualization: NrrdTextureBuilderAlgo.h (new)
  • Core/Volume: TextureBrick.cc (+24 -51), TextureBrick.h (new)
mjc 2005-11-14 11:16 Rev.: 32535

replace int argument for get_type_description with enum that specifies which info you are interested in. depricate virtual const string get_type_name(int n = -1) const, use get_type_description(...)->get_name() instead.

426 lines of code changed in 106 files:

  • Core/Algorithms/Visualization: NrrdTextureBuilderAlgo.h (+1 -1), TextureBuilderAlgo.h (+2 -2)
  • Core/Datatypes: Field.cc (-6), Field.h (+10 -2), GenericField.h (+40 -30)
  • Dataflow/Modules/Fields: ApplyMappingMatrix.cc (+6 -6), AttractNormals.cc (+4 -4), CastMLVtoHV.cc (+1 -1), ChangeFieldBasis.cc (+10 -10), ChangeFieldDataType.cc (+5 -5), DirectMapping.cc (+5 -5), FieldBoundary.cc (+6 -6), FieldCage.cc (new), FieldFrenet.cc (+3 -3), FieldSlicer.cc (+4 -4), FieldSlicer.h (+2 -2), FieldSubSample.cc (+3 -3), FieldSubSample.h (+4 -4), Gradient.cc (+4 -4), ManageFieldData.cc (+7 -7), MoveElemToNode.cc (+5 -5), MoveNodeToElem.cc (+4 -4), NodeGradient.cc (+1 -1), PlanarTransformField.h (new), TransformData.cc (+5 -5), TransformData2.cc (+8 -8), TransformData3.cc (+13 -13), Unstructure.cc (+1 -1), VectorMagnitude.cc (+4 -4)
  • Dataflow/Modules/Visualization: ShowField.cc (new), StreamLines.cc (+1 -1), TextureBuilder.cc (new)
  • Packages/BioPSE/Dataflow/Modules/Forward: AnisoSphereModel.cc (+8 -2), ApplyFEMElectrodeSource.cc (+6 -2), CreateDisAnisoSpheres.cc (+110 -107), ForwardMagneticField.cc (+1 -1), IndicesToTensors.cc (+4 -4), SetupFEMatrix.cc (+1 -1), TensorsToIndices.cc (+4 -4)
  • Packages/BioPSE/Dataflow/Modules/NeuroFEM: ForwardIPM.cc (+1 -1), InverseIPM.cc (+1 -1)
  • Packages/Fusion/Dataflow/Modules/Fields: StreamlineAnalyzer.cc (+9 -9), StreamlineAnalyzer.h (+1 -1)
  • Packages/Insight/Dataflow/Modules/Converters: FieldToImage.cc (+2 -2)
  • Packages/ModelCreation/Core/Algorithms: ArrayObjectFieldAlgo.cc (+6 -6)
  • Packages/ModelCreation/Core/Fields: DistanceToField.cc (new), FieldDataElemToNode.cc (+5 -5), FieldDataNodeToElem.cc (+4 -4), FieldsMath.cc (+8 -8), GetFieldData.cc (+1 -1), MappingMatrixToField.cc (new), SetFieldData.cc (+5 -5)
  • Packages/PCS/Dataflow/Modules/Visualization: Silhouettes.cc (new)
  • Packages/Teem/Dataflow/Modules/Converters: ConvertToNrrd.h (+2 -2), FieldToNrrd.cc (+1 -1), NrrdToField.cc (+2 -2)
  • Packages/VDT/StandAlone/convert: TriSurfToVDT.cc (+4 -4)
  • Packages/VS/Dataflow/Modules/DataFlow: HotBox.cc (new)
  • Packages/VS/Standalone/src: CalcLVVol.cc (new)
  • StandAlone/convert: CurveFieldToText.cc (new), HexVolFieldToText.cc (new), HexVolToVtk.cc (+3 -2), PointCloudFieldToText.cc (+2 -2), QuadSurfFieldToText.cc (+2 -2), SampleHexTricubicHmt.cc (new), StructCurveFieldToText.cc (+2 -2), StructHexVolFieldToText.cc (new), StructQuadSurfFieldToText.cc (+2 -2), TetVolFieldToText.cc (new), TriSurfFieldToText.cc (+2 -2), TriSurfToOBJ.cc (+5 -2), TriSurfToTetgen.cc (new), TriSurfToVtk.cc (+5 -2)
  • StandAlone/utils: PCA-example.cc (+2 -2)
mjc 2005-11-14 09:14 Rev.: 32534

return false if locate fails

0 lines of code changed in 2 files:

  • Core/Datatypes: FieldInterfaceAux.h (changed)

(147 more)

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