Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Large scale visualization on the Powerwall.
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

1993


E.P. France, J.A. Weiss, L.E. Paulos. “Allograft Ligament Reconstruction: Biomechanical Issues and Testing,” In Sports Medicine and Arthroscopy Review, Vol. 1, pp. 47--60. 1993.



P.B. Gharpure, C.R. Johnson. “A 3D Cellular Automata Model of the Heart,” In IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, IEEE Press, pp. 752--753. 1993.



C.D. Hansen, S. Tenbrink. “The Impact of Gigabit Network Research on Scientific Visualization,” In The Visual Computer, Vol. 9, No. 6, pp. 318--323. 1993.



C.D. Hansen, M. Krogh. “Visualization on Massively Parallel Computers using CM/AVS,” In AVS Users Conference, Orlando, Fl., pp. 129--137. May, 1993.



P. Hinker, C.D. Hansen. “Geometric Optimization,” In Visualization 1993, San Jose, Ca., pp. 189--195. October, 1993.



C.R. Johnson, R.S. MacLeod. “Inverse Solutions for Electric and Potential Field Imaging,” In Physiological Imaging, Spectroscopy, andEarlyDetection Diagnostic Methods, Vol. 1887, Edited by R.L. Barbour and M.J. Carvlin, SPIE, pp. 130--139. 1993.



C.R. Johnson, R.S. MacLeod, M.A. Matheson. “Computational Medicine: Bioelectric Field Problems,” In IEEE Computer, Vol. 26, No. 26, pp. 59--67. Oct, 1993.



C.R. Johnson, R.S. MacLeod. “High Performance Computing in Medicine: Direct and Inverse Problems in Cardiology,” In IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, pp. 582--583. 1993.



C.R. Johnson, R.S. MacLeod, M.A. Matheson, C. Zimmerman. “The Body Electric,” In Discover Magazine, pp. 72--77. February, 1993.



S. Joshi, M. Miller. “Maximum a Posteriori Estimation with Good's Roughness for Three-Dimensional Optical-Sectioning Microscopy,” In J Opt Soc Am A, Vol. 10, No. 5, pp. 1078--1085. May, 1993.



K.L. Ma, J. Painter, C.D. Hansen, M. Krogh. “A Data Distributed, Parallel Algorithm for Ray-Traced Volume Rendering,” In Proceedings of the Parallel Rendering Symposium 1993, San Jose, Ca., pp. 15--22. October, 1993.



K.L. Ma, J.S. Painter, C.D. Hansen, M.F. Krogh. “A Data Distributed Parallel Algorithm for Ray-Traced Volume Rendering,” ICASE Report, Hampton, VA, Institute for Computer Applications in Science and Engineering, NASA Langley Research Center, pp. 15--22. August, 1993.



R.S. MacLeod, C.R. Johnson, M.A. Matheson. “Visualization of Bioelectric Fields,” In IEEE Computer Graphics and Applications, Vol. 14, pp. 10--12. Jul, 1993.



R.S. MacLeod, C.R. Johnson. “Map3d: Interactive Scientific Visualization for Bioengineering Data,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, IEEE Press, pp. 30--31. 1993.



F. Ortega, C.D. Hansen, J. Ahrens. “Fast Data Parallel Polygon Rendering,” In Supercomputing 1993, Portland, Or., pp. 709--718. November, 1993.



A. Paoluzzi, V. Pascucci, M. Vicentino. “PLASM Functional Approach to Design: Representation of Geometry,” In Proceedings of the Fifth International Conference on Computer-Aided Design Futures (CAAD Futures '93), Edited by U. Flemming and S. Van Wyk, North-Holland, pp. 127--141. 1993.



A. Paoluzzi, V. Pascucci, M. Vicentino. “Un linguaggio di progettazione orientato al Solid Modeling (A Design Language oriented to Solid Modeling),” In Atti del convegno IcoGraphics '93, Note: In Italian, Mondadori Informatica, Milano, Italy pp. 60--66. March, 1993.



J. Parker, M. Berzins, J.M. Cameron, K.A. Collins, C.M. Sawyer. “Final Report on SERC/DTI Parallel Applications Programme Collaboration Between EPCC, Rolls Royce ands Leeds University,” Edinburgh Parallel Computing Centre, September, 1993.



C. Walshaw, M. Berzins. “Enhanced Dynamic Load Balancing of Adaptive Unstructured Meshes,” In Proc. of 1993 SIAM Conference on Parallel Processing for Scientific Computing, Vol. 2, pp. 971--978. 1993.


1992


D.R. Anderson, J.A. Weiss, S. Takai, K.J. Ohland, S.L-Y. Woo. “Healing of the Medial Collateral Ligament Following a Triad Injury: A Biomechanical and Histological Study of the Knee in Rabbits,” In Journal of Orthopaedic Research, Vol. 10, pp. 485--495. 1992.