Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Large scale visualization on the Powerwall.
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


F. Yu, C.R. Johnson. “An Automatic Adaptive Refinement and Derefinement Method,” In Proceedings of the 14th IMACS World Congress, pp. 1555--1557. 1994.


C.M. Bagi, M. Mecham, J.A. Weiss, S.C. Miller. “Comparative Morphometric Changes in Rat Cortical Bone Following Ovariectomy and/or Immobilization,” In Bone, Vol. 14, pp. 877--883. 1993.

F. Bernardini, V. Ferrucci, A. Paoluzzi, V. Pascucci. “Product Operator on Cell Complexes,” In SMA '93: Proceedings of the Second Symposium on Solid Modeling and Applications, Note: held May 19-21, 1993 in Montreal, Quebec, Canada, ACM, pp. 43--52. May, 1993.

M. Berzins, J.M. Ware. “Reliable Finite Volume Methods for Time-Dependent Partial Differential Equations,” In MAFELAP 1993 Highlights, Edited by J.R. Whiteman and John Wiley, pp. 299--306. 1993.

E.P. France, J.A. Weiss, L.E. Paulos. “Allograft Ligament Reconstruction: Biomechanical Issues and Testing,” In Sports Medicine and Arthroscopy Review, Vol. 1, pp. 47--60. 1993.

P.B. Gharpure, C.R. Johnson. “A 3D Cellular Automata Model of the Heart,” In IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, IEEE Press, pp. 752--753. 1993.

C.D. Hansen, S. Tenbrink. “The Impact of Gigabit Network Research on Scientific Visualization,” In The Visual Computer, Vol. 9, No. 6, pp. 318--323. 1993.

C.D. Hansen, M. Krogh. “Visualization on Massively Parallel Computers using CM/AVS,” In AVS Users Conference, Orlando, Fl., pp. 129--137. May, 1993.

P. Hinker, C.D. Hansen. “Geometric Optimization,” In Visualization 1993, San Jose, Ca., pp. 189--195. October, 1993.

C.R. Johnson, R.S. MacLeod. “Inverse Solutions for Electric and Potential Field Imaging,” In Physiological Imaging, Spectroscopy, andEarlyDetection Diagnostic Methods, Vol. 1887, Edited by R.L. Barbour and M.J. Carvlin, SPIE, pp. 130--139. 1993.

C.R. Johnson, R.S. MacLeod, M.A. Matheson. “Computational Medicine: Bioelectric Field Problems,” In IEEE Computer, Vol. 26, No. 26, pp. 59--67. Oct, 1993.

C.R. Johnson, R.S. MacLeod. “High Performance Computing in Medicine: Direct and Inverse Problems in Cardiology,” In IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, pp. 582--583. 1993.

C.R. Johnson, R.S. MacLeod, M.A. Matheson, C. Zimmerman. “The Body Electric,” In Discover Magazine, pp. 72--77. February, 1993.

S. Joshi, M. Miller. “Maximum a Posteriori Estimation with Good's Roughness for Three-Dimensional Optical-Sectioning Microscopy,” In J Opt Soc Am A, Vol. 10, No. 5, pp. 1078--1085. May, 1993.

K.L. Ma, J. Painter, C.D. Hansen, M. Krogh. “A Data Distributed, Parallel Algorithm for Ray-Traced Volume Rendering,” In Proceedings of the Parallel Rendering Symposium 1993, San Jose, Ca., pp. 15--22. October, 1993.

K.L. Ma, J.S. Painter, C.D. Hansen, M.F. Krogh. “A Data Distributed Parallel Algorithm for Ray-Traced Volume Rendering,” ICASE Report, Hampton, VA, Institute for Computer Applications in Science and Engineering, NASA Langley Research Center, pp. 15--22. August, 1993.

R.S. MacLeod, C.R. Johnson, M.A. Matheson. “Visualization of Bioelectric Fields,” In IEEE Computer Graphics and Applications, Vol. 14, pp. 10--12. Jul, 1993.

R.S. MacLeod, C.R. Johnson. “Map3d: Interactive Scientific Visualization for Bioengineering Data,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 15th Annual International Conference, IEEE Press, pp. 30--31. 1993.

F. Ortega, C.D. Hansen, J. Ahrens. “Fast Data Parallel Polygon Rendering,” In Supercomputing 1993, Portland, Or., pp. 709--718. November, 1993.

A. Paoluzzi, V. Pascucci, M. Vicentino. “PLASM Functional Approach to Design: Representation of Geometry,” In Proceedings of the Fifth International Conference on Computer-Aided Design Futures (CAAD Futures '93), Edited by U. Flemming and S. Van Wyk, North-Holland, pp. 127--141. 1993.