March 2006 Commit Log

Number of Commits:
302
Number of Active Developers:
24
ayla 2006-03-31 18:40 Rev.: 33730

Allow the Ptolemy package to be used without ptolemyII and Java.

196 lines of code changed in 8 files:

ayla 2006-03-31 18:00 Rev.: 33729

Update for DTD changes.

0 lines of code changed in 2 files:

dgroulx 2006-03-31 17:40 Rev.: 33728

Added the OnTheFlyAnalysis modulue to the sus build file.

3 lines of code changed in 1 file:

guilkey 2006-03-31 17:02 Rev.: 33727

MPMICE: Added a refineCoarseFineInterface task, which doesn't actually
do any refining, but instead re-initializes NC_CCweight, the extra node
values of which get clobbered by copyData.

SchedulerCommon: Moved where the d_sharedState->setCopyDataTimestep(true)
is set. (Bryan)

AMRICE: Removed Duplicate function call to getAllMaterials

74 lines of code changed in 4 files:

callahan 2006-03-31 12:21 Rev.: 33725

Cut to projected line instead of original.

6 lines of code changed in 1 file:

yguo 2006-03-31 10:50 Rev.: 33724

Add the effect of stress state on stress intensity factors in converting J-integral into stress intensity factor.

3 lines of code changed in 1 file:

yguo 2006-03-31 10:49 Rev.: 33723

Read in stress state of crack front.

0 lines of code changed in 2 files:

yguo 2006-03-31 10:47

Add the effect of stress state on stress intensity factors in the subroutine for converting J-integral into stress intensity factor.

5 lines of code changed in 7 files:

guilkey 2006-03-31 10:40 Rev.: 33717

Bryan's change to allow a patch to be destroyed once all particles have left.

9 lines of code changed in 1 file:

mjc 2006-03-31 09:15 Rev.: 33715

fix get_compile_info

63 lines of code changed in 4 files:

xiongcw 2006-03-30 19:35 Rev.: 33714

a few improvements to Steady_Burn

1 lines of code changed in 1 file:

xiongcw 2006-03-30 19:33 Rev.: 33713

A few improvements to Steady_Burn

63 lines of code changed in 2 files:

guilkey 2006-03-30 19:12 Rev.: 33712

In MPMICE.cc, fixed compiler warning, minor formatting tweaks.
In AMRICE.cc, now do refineCFI for all matls for sp_vol and temp,
as these are needed (sort of) in interpolateNCToCC_0. This change,
along with specifying the need to copy that data in the input file,
allows regridding to work, at least until patches are destroyed.
Thanks Bryan.

74 lines of code changed in 2 files:

kuzimmer 2006-03-30 19:08 Rev.: 33711

Set the default line_width_ to 0.0 for all GeomLine forms. In draw routines, use di->line_width_ unless the value of line_width has been set to something greater than 0.0 via a set_line_width call.

17 lines of code changed in 5 files:

harman 2006-03-30 16:07 Rev.: 33709

refineCoarseFineInterface()
- pulled refinement of pressure out of the material loop

17 lines of code changed in 1 file:

harman 2006-03-30 15:48 Rev.: 33708

scheduleUpdatePressure()
use gac,1 for impDelP on the coarse level.

4 lines of code changed in 1 file:

kuzimmer 2006-03-30 15:08 Rev.: 33707

Don't shortcut the execute if dealing with a Mult-level field

1 lines of code changed in 1 file:

dav 2006-03-30 14:43 Rev.: 33706

M rtrt/Core/Background.h

Put the rtrt #includes next to each other.

M rtrt/Core/Array2.h

Cleaned up as I tried to figure out how to get the Pio symbols on the
SGI to resolve. (No real changes in this file.)

M rtrt/StandAlone/scenes/uintahisosurface.cc

Few cosmetic updates... however, the real change was to move the #include of rtrt/Core/Background.h to above the Uintah #includes. This fixed the SGI compiler's problem with resolving Pio symbols... I don't like this fix, but I don't think spending more time on it is justified at this point as RTRT will sometime soon be replaced with Manta.

M Uintah/Core/Grid/Variables/NodeIterator.h

Needs IntVector... so #included it.


21 lines of code changed in 7 files:

kuzimmer 2006-03-30 14:37 Rev.: 33705

create a tab that allows 1-click selection of the port

236 lines of code changed in 3 files:

dav 2006-03-30 13:33 Rev.: 33703

M Core/Persistent/Persistent.h

Put default parameter values in the 'definition', not in the friend
statement. This makes xlC (AIX) happy.

M Core/Datatypes/SparseRowMatrix.cc

Cleaned up compiler warnings and formatting.

M Core/Datatypes/SearchGrid.cc

Use SCI's 'Round' instead of round... fixes compilation problem on SGI (I think it is SGI).

M Packages/BioPSE/Core/Datatypes/SegLatVolField.cc
M Packages/Teem/Dataflow/Modules/DataIO/ImageImporter.cc
M Packages/Teem/Dataflow/Modules/Gage/GageProbe.cc
M Packages/Teem/Dataflow/Modules/Segmentation/MRITissueClassifier.cc

- Initialized variables that may be used without being set... not sure if
my initialization value is right, but it better than randomness...

- PLEASE, Please, please... don't use one character variable
names... (and if you must, please declare them right where they are
used and only use them in a small '{}' section.

M Packages/Uintah/Dataflow/Modules/Visualization/sub.mk

Requires the Core/Basis lib. (The Mac is picky)


29 lines of code changed in 10 files:

livne 2006-03-30 13:03 Rev.: 33702

Properly setting Hypre AMG solver logging flag from input file parameters.

1 lines of code changed in 1 file:

mjc 2006-03-30 11:44 Rev.: 33700

return true from get_input_handle only if a valid rep is set in the handle, this allows optional ports to use the return value of this method to process the contents of the handle without a redundant get_rep test. Fix logic for optional calls in modules that use it

13 lines of code changed in 5 files:

callahan 2006-03-30 10:54 Rev.: 33699

More InsertField regression networks.

378 lines of code changed in 2 files:

dav 2006-03-29 19:52 Rev.: 33697

Fix -g -O2 problem. Fix glui check.

22 lines of code changed in 2 files:

callahan 2006-03-29 18:44 Rev.: 33695

Update search grid in insert_node_in_face

47 lines of code changed in 1 file:

guilkey 2006-03-29 18:33 Rev.: 33694

Setting BCs on coarse level after coarsening following NCToCC_0 and
computeLagrangianValuesMPM. I'm not especially proud of this, but it
works.

18 lines of code changed in 1 file:

callahan 2006-03-29 17:44 Rev.: 33693

Add commentary

5 lines of code changed in 1 file:

kuzimmer 2006-03-29 17:40 Rev.: 33692

create a mechanism that allows the user to specify that they want to view multi-level data whenever its available. This allows a user to create movies when data changes from single level to multi-level during the course of a simulation

8 lines of code changed in 1 file:

kuzimmer 2006-03-29 17:37 Rev.: 33691

set the field's name to be the variable name represented

1 lines of code changed in 1 file:

callahan 2006-03-29 17:32 Rev.: 33690

Fix initialization bug in TriSurfMesh::find_closest_face

4 lines of code changed in 1 file:

guilkey 2006-03-29 17:26 Rev.: 33689

Changes to go along with MPMICE.cc version 33688. Sorry that I screwed
up the atomic commit wedgy.

37 lines of code changed in 1 file:

guilkey 2006-03-29 17:20 Rev.: 33688

Reworked multi-level MPMICE. Previously, only MPM took place at the
finest level, and ICE and MPMICE operations occurred at coarser levels.
Now, while MPM still only operates on the finest level, ICE/MPMICE operations
take place on all levels. Solid phase reaction models can now be used
with multi-level MPMICE.

Still some problems with regridding. Currently, in order to use regridding,
one should swap the comments from line 1277 - 1281. The single level code
will work either way, but after swapping comments, the RT results will
change, so I'm avoiding that for now.

268 lines of code changed in 1 file:

harman 2006-03-29 17:11 Rev.: 33686

more descriptive progressive warning

4 lines of code changed in 3 files:

callahan 2006-03-29 17:05 Rev.: 33685

Synchronize LOCATE_E before calling find_closest_face.

4 lines of code changed in 1 file:

callahan 2006-03-29 17:05 Rev.: 33684

Move TriSurfMesh::locate to use SearchGrid. Preliminary use of grid for find_closest_face

249 lines of code changed in 3 files:

callahan 2006-03-29 17:04 Rev.: 33683

synchronize all of transform

1 lines of code changed in 1 file:

guilkey 2006-03-29 16:07 Rev.: 33682

Add computes to scheduleRefine

45 lines of code changed in 1 file:

mdavis 2006-03-29 14:23 Rev.: 33680

Put Painter's embeded viewer in aframe to look consistent

0 lines of code changed in 2 files:

mdavis 2006-03-29 14:22 Rev.: 33679

Threshold and clut changes for demo purposes

9 lines of code changed in 1 file:

mdavis 2006-03-29 14:10 Rev.: 33678

Transfer function clipping enabled again

5 lines of code changed in 2 files:

sbrown 2006-03-29 14:05 Rev.: 33677

SB: attempting to Steve-proof this file.

1 lines of code changed in 1 file:

dgroulx 2006-03-29 13:27 Rev.: 33676

Petsc check will now set archetecture for both ppc and intel macs.

10 lines of code changed in 2 files:

guilkey 2006-03-29 12:57 Rev.: 33675

Make setBC_FineLevel only operate on ICE materials.

8 lines of code changed in 1 file:

borodai 2006-03-29 11:46 Rev.: 33674

fixed soot precursors

1 lines of code changed in 1 file:

darbyb 2006-03-29 08:46 Rev.: 33673

Fixed capitalization of Datatypes directory in include.

1 lines of code changed in 1 file:

guilkey 2006-03-28 18:45 Rev.: 33671

Added getFineLevelRangeNodes for using in coarsening NCVariables

22 lines of code changed in 2 files:

jeroen 2006-03-28 18:13 Rev.: 33670

Previous implementation was too slow as well, hence this one will use more memory but should be fast for multiplying mapping matrices

85 lines of code changed in 1 file:

jeroen 2006-03-28 18:11 Rev.: 33669

Bug fixes and updates

276 lines of code changed in 9 files:

callahan 2006-03-28 16:53 Rev.: 33666

Work around crash bug caused by scale widget causing an early redraw of the EditColorMap2D window.

16 lines of code changed in 3 files:

callahan 2006-03-28 16:52 Rev.: 33665

Fix for ambiguous send_output_handle casting when third arguement is a 'const char *', compiler doesn't know whether to convert it to a bool or a string. Force string conversion.

7 lines of code changed in 1 file:

callahan 2006-03-28 16:51 Rev.: 33664

Undo previous checkin, casts not needed

4 lines of code changed in 3 files:

kuzimmer 2006-03-28 16:10 Rev.: 33663

moved function calls into the correct scope

2 lines of code changed in 1 file:

harman 2006-03-28 16:05 Rev.: 33662

uncommented bug fix. was previously checked in commented out.

1 lines of code changed in 1 file:

ayla 2006-03-28 14:49 Rev.: 33661

Reverting last week's changes.

7 lines of code changed in 4 files:

ayla 2006-03-28 14:36 Rev.: 33660

Reverting last week's changes.

22 lines of code changed in 7 files:

ayla 2006-03-28 14:05 Rev.: 33659

Update for changes to Dataflow Ports.

3 lines of code changed in 2 files:

worthen 2006-03-28 11:14 Rev.: 33658

Disable MPMARCHES again

0 lines of code changed in 2 files:

worthen 2006-03-27 20:58 Rev.: 33657

Fix Todd's problem, and some var tracking updates

9 lines of code changed in 1 file:

harman 2006-03-27 19:11 Rev.: 33656

HyprePatch_CC::makeConnections()
- for the temporary stencil size counter use Ghost::AroundCells, 1

-renamed the makeConnections() -> makeGraphConnections (graph version)

-Code diet.

-rename variables.


62 lines of code changed in 2 files:

sparker 2006-03-27 17:52 Rev.: 33655

Get number of processors for os x

12 lines of code changed in 1 file:

allen 2006-03-27 17:52 Rev.: 33654

Added string so the correct instance would be called

4 lines of code changed in 2 files:

mdavis 2006-03-27 15:10 Rev.: 33653

Fix TCL error displaying module w/ no ports.

1 lines of code changed in 1 file:

mdavis 2006-03-27 15:08 Rev.: 33652

Dont call update_progress in constructor. Fixes TCL error on loading networks

0 lines of code changed in 18 files:

sbrown 2006-03-27 12:56 Rev.: 33651

SB: removed support for unused mixing models

7 lines of code changed in 1 file:

sbrown 2006-03-27 12:53 Rev.: 33650

SB: Removing unused mixing models: {PDF*, Mean, Flamelet*, StaticMixingTable, Integrator}

1 lines of code changed in 23 files:

harman 2006-03-27 10:45 Rev.: 33649

retired.

0 lines of code changed in 1 file:

jeroen 2006-03-26 21:16 Rev.: 33648

Fixes to the system to link opposing boundaries in a geometry

1639 lines of code changed in 29 files:

spinti 2006-03-26 17:40 Rev.: 33647

Added methane (ch4IN) and acetylene (c2h2IN) labels, made changes to the table syntax read by NewStaticMixingTable, and added exceptions in NewStaticMixingTable for most scenarios.

168 lines of code changed in 17 files:

mjc 2006-03-25 13:19 Rev.: 33645

revert overly agressive set_stack_size name change

30 lines of code changed in 37 files:

jas 2006-03-24 20:10 Rev.: 33644

Do 2 pt integration for the capacitive matrix term.

43 lines of code changed in 1 file:

jas 2006-03-24 17:41 Rev.: 33643

Allow for mpirun to be used for a single processor/patch combination needed
by mpmarches.

Clear MPI variable after each test case. Include MPI variable when doing
the restart test.

26 lines of code changed in 1 file:

cgribble 2006-03-24 16:25 Rev.: 33642


Core/Array2.cc
Core/Array2.h
Core/Background.cc
Core/BrickArray2.h
Core/BrickArray3.h
Core/Heightfield.cc
Core/Heightfield.h
Core/ImageMaterial.cc
Core/templates.cc

Trying to fix weird Pio template issues.

Core/Gui.cc
Core/Gui.h

Got rid of glut_dpy and glut_win which were really dangerous and not
really needed anymore since the Glut window isn't part of the main
rtrt window.

Core/HVolume.h
Core/HVolumeVis.h

Fixes for gcc 4.0 (i.e. the stupid this->parentClassMember issue).

Core/VolumeVis2D.h

Wrong class name for Volvis3DDpy.

Dataflow/Modules/Render/sub.mk
Dataflow/Modules/Scenes/sub.mk
Dataflow/Ports/sub.mk

Dataflow/Ports is now in Dataflow/Network.

StandAlone/scenes/3ds.cc

Added option for x86_64

StandAlone/scenes/sub.mk

Removed terrain an dheightfield until we can fix the Pio template
gunk.

146 lines of code changed in 33 files:

cgribble 2006-03-24 16:13 Rev.: 33641

Try to compile glui and oogl with the C++ copiler.

319 lines of code changed in 2 files:

jas 2006-03-24 15:33 Rev.: 33640

Reorder the arguments for VecAXPY for petsc 2.3.0.

6 lines of code changed in 3 files:

jas 2006-03-24 15:02 Rev.: 33639

Add outputProblemSpec so that restart will work properly.

18 lines of code changed in 2 files:

harman 2006-03-24 14:40 Rev.: 33638

compute_refluxFluxes_RHS()
use gac, 1, for the temporary variables

more debugging spew (turned off)

13 lines of code changed in 2 files:

jeroen 2006-03-24 14:35 Rev.: 33637

Progress on linking opposing boundaries in FEM

87 lines of code changed in 8 files:

jeroen 2006-03-24 14:34 Rev.: 33636

Updates to work with new Module class

104 lines of code changed in 18 files:

allen 2006-03-24 13:45 Rev.: 33635

added lots of comments so that the modules can be used an example

426 lines of code changed in 13 files:

worthen 2006-03-24 13:23 Rev.: 33634

Use correct chem callback

2 lines of code changed in 1 file:

harman 2006-03-24 11:28 Rev.: 33633

Get data with gac 1, simplified the patch intersection logic.

9 lines of code changed in 1 file:

jeroen 2006-03-23 19:59 Rev.: 33632

Some things got apparently not fixed when the Module class was redone

513 lines of code changed in 32 files:

allen 2006-03-23 19:24 Rev.: 33631

updated to use coding std for gui vars and to use the helpers methods for getting and sending handles

3391 lines of code changed in 93 files:

callahan 2006-03-23 19:05 Rev.: 33630

Move TCLTask static functions into TCLTask.cc so that the world doesn't have to include ThreadLock.h

318 lines of code changed in 6 files:

dmw 2006-03-23 18:14 Rev.: 33629

- Fix linking problems in BioPSE package on Mac (missing dependencies)

0 lines of code changed in 6 files:

callahan 2006-03-23 17:53 Rev.: 33628

Minor whitespace cleanup

0 lines of code changed in 1 file:

jeroen 2006-03-23 17:16 Rev.: 33627

remove Dataflow/Ports from makefile...

3 lines of code changed in 1 file:

jeroen 2006-03-23 17:11 Rev.: 33626

fixing problem due to changes in Module.h

0 lines of code changed in 4 files:

jeroen 2006-03-23 17:07 Rev.: 33625

Making things compile on my machine again...

18 lines of code changed in 1 file:

jas 2006-03-23 16:09 Rev.: 33624

Add TestBoxGrouper to compile line so RunTest will compile.

2 lines of code changed in 1 file:

mdavis 2006-03-23 14:34 Rev.: 33623

Add Volume Rendering to Segmenter app

242 lines of code changed in 3 files:

mdavis 2006-03-23 14:33 Rev.: 33622

Layer merge w/ 'm' key

56 lines of code changed in 3 files:

worthen 2006-03-23 13:03 Rev.: 33620

Fix skipped tests' working dir

14 lines of code changed in 1 file:

guilkey 2006-03-23 11:23 Rev.: 33619

Fixed small bugs in the calculation of gradients and divergences.

4 lines of code changed in 1 file:

kuzimmer 2006-03-23 11:21 Rev.: 33618

allow the Gage library to be included when compiling with 'make teemmodules'

0 lines of code changed in 2 files:

kuzimmer 2006-03-23 11:18 Rev.: 33617

allow the String library to be compiled when user types 'make scimodules'

0 lines of code changed in 2 files:

mdavis 2006-03-23 09:55 Rev.: 33616

Remove debug printf

0 lines of code changed in 1 file:

mdavis 2006-03-23 09:48 Rev.: 33615

Check input handle for null before setting generation_. Set to -1 if null input

0 lines of code changed in 2 files:

mjc 2006-03-23 09:44 Rev.: 33614

undo ifdefs no longer needed, since tetgen is a separate module now

3 lines of code changed in 1 file:

mdavis 2006-03-23 09:28 Rev.: 33613

Fix initialization of SCIRun ports by referencing correct lib for location of port's maker funciton

1 lines of code changed in 1 file:

mdavis 2006-03-23 09:20 Rev.: 33612

Fix build. Remove inadvertent checkin of Packages/Insight/Dataflow/Network lib

0 lines of code changed in 2 files:

mdavis 2006-03-23 09:18 Rev.: 33611

Fix build. Remove Dataflow/Ports lib

3 lines of code changed in 2 files:

dav 2006-03-22 21:57 Rev.: 33610

Fix XML... though these modules probably aren't ever used.

0 lines of code changed in 8 files:

dav 2006-03-22 21:45 Rev.: 33609

Use full path for #include.

4 lines of code changed in 1 file:

dav 2006-03-22 21:45 Rev.: 33608

Use getID(), not get_id().

0 lines of code changed in 2 files:

dav 2006-03-22 21:44 Rev.: 33607

Removed unused var.

1 lines of code changed in 1 file:

dav 2006-03-22 21:44 Rev.: 33606

Needs Core/Volume to link.

1 lines of code changed in 1 file:

dav 2006-03-22 21:43 Rev.: 33605

Cleaned up lib list.

4 lines of code changed in 1 file:

dav 2006-03-22 21:43 Rev.: 33604

Added in PatchCombiner

3 lines of code changed in 1 file:

dav 2006-03-22 21:32 Rev.: 33603

Clean up indention.

0 lines of code changed in 2 files:

dav 2006-03-22 21:32 Rev.: 33602

More Updates to fix getID() problems and to address the move of Dataflow/Ports

735 lines of code changed in 199 files:

dav 2006-03-22 21:23 Rev.: 33601

Added 'newline' to end of file.

0 lines of code changed in 2 files:

dav 2006-03-22 21:17 Rev.: 33600

Two things coming on it commit:

1) Dataflow/Ports was moved into Dataflow/Network/Ports

- Fixed the sub.mk files to not use libDataflow_Ports as it is now part of
libDataflow_Network. Cleaned many of the sub.mk files up so that
libraries were only listed once.

- I've only tested these changes on the main Packages... I visually
inspected the others, don't know for sure if I got everything.

2) Clean up of Uintah problems from the large commit Marty made earlier

- continue to use getID() for patches.

- another commit is coming shortly to continue the fixes for Uintah



1393 lines of code changed in 757 files:

dav 2006-03-22 21:13 Rev.: 33599

Moved Port.h and Port.cc into Ports

372 lines of code changed in 4 files:

dav 2006-03-22 21:12 Rev.: 33598

deleting so I can 'svn mv' them here.

0 lines of code changed in 2 files:

dav 2006-03-22 21:10 Rev.: 33597

Moved 'Ports' into Dataflow/Networks/

3306 lines of code changed in 30 files:

dav 2006-03-22 20:59 Rev.: 33596

Remove extra comma

1 lines of code changed in 1 file:

dav 2006-03-22 20:56 Rev.: 33595

Be specific about include.

0 lines of code changed in 2 files:

harman 2006-03-22 18:16 Rev.: 33593

added advect 2matl, AMR to the RT

2 lines of code changed in 3 files:

mdavis 2006-03-22 16:42 Rev.: 33590

Check input handle for null before setting last_generation and generation_

0 lines of code changed in 2 files:

mjc 2006-03-22 16:42 Rev.: 33591

add with-tetgen option to configure, Make Module.h conform to the coding standard, and all the massive fallout from renaming variables and slots in that class

6097 lines of code changed in 822 files:

harman 2006-03-22 16:07 Rev.: 33589

refluxing bulletproofing:
- The same processor must "touch" and "test" each patch face.
Added machinery inside of reflux_BP_check_CFI_cells()

for patch in coarsePatches
find finePatches
for finePatch in finePatches
for coarse-face-interfaces in finePatch
see if Mark matches what it should

This is a little dangerous since the same logic used to set "touch"
the patch faces is used to test them.

100 lines of code changed in 1 file:

worthen 2006-03-22 15:23 Rev.: 33588

UCF tests should say 'Passed' now

18 lines of code changed in 2 files:

callahan 2006-03-22 15:15 Rev.: 33587

Fix tcl errors in last checkin.

2 lines of code changed in 1 file:

jeroen 2006-03-22 10:16 Rev.: 33585

Sync with latest developments

1721 lines of code changed in 16 files:

jeroen 2006-03-22 10:12 Rev.: 33584

Sync package with latest development

2984 lines of code changed in 44 files:

harman 2006-03-21 19:40 Rev.: 33583

All xml include files and older reaction tables now conform
to the "new" table standard.

2 lines of code changed in 1 file:

callahan 2006-03-21 16:22 Rev.: 33582

Fix HexToTet rotation of elements problem, bug #2830

0 lines of code changed in 2 files:

dav 2006-03-21 15:00 Rev.: 33581

Retired tclgui... it was only a test program and was never actually used. It is unclear if it currently works or not, so if you ever resurrect it, be aware.

0 lines of code changed in 3 files:

dav 2006-03-21 14:59 Rev.: 33580

Fixes for new TCLThread... however, this hasn't been tested and tclgui.cc is being retired (on the next commit).

0 lines of code changed in 1 file:

guilkey 2006-03-21 14:05 Rev.: 33579

Make material attribute spew go to cout_norm, not just cout.

1 lines of code changed in 1 file:

allen 2006-03-21 13:41

updated to use state wrapper calls

93 lines of code changed in 3 files:

callahan 2006-03-21 11:54 Rev.: 33576

Minor cleanups, use unsigned int indices for internal structures.

13 lines of code changed in 1 file:

harman 2006-03-21 10:53 Rev.: 33575


performConsistencyCheck()
inside bulletproofing section :finer level must have a box width that is an integer of the cell spacing
- increased the remainder threshold by a factor of 10

1 lines of code changed in 1 file:

harman 2006-03-20 18:58 Rev.: 33574

refluxCoarseLevelIterator()
- now passing in string indicating which task this function is being called from.
- changed conditional that detects if this is the right coarse/fine patch pair.
- subtract one from (h) before passing it into the conditional.

Warning: this is really confusing code!

34 lines of code changed in 3 files:

mjc 2006-03-20 17:35 Rev.: 33573

fix incorrect port caching

0 lines of code changed in 4 files:

callahan 2006-03-20 17:22 Rev.: 33572

Minor cleanup, use setGlobal for tcl variable initializations

7 lines of code changed in 10 files:

callahan 2006-03-20 17:17 Rev.: 33571

Fix guivar initialization for GenericReader and GenericWriter derived classes.

4 lines of code changed in 14 files:

mjc 2006-03-20 17:13 Rev.: 33570

fix bug with saving .srn files that have a module with multiple output ports that have caching set, fix incorrectly saved .srn

18 lines of code changed in 3 files:

callahan 2006-03-20 16:49 Rev.: 33569

Minor cleanup of synchronize_lock_

9 lines of code changed in 1 file:

callahan 2006-03-20 16:46 Rev.: 33568

Consolidate synchronize locks in HexVolMesh

35 lines of code changed in 1 file:

callahan 2006-03-20 16:36 Rev.: 33567

Consolidate synchronize locks in QuadSurfMesh

22 lines of code changed in 1 file:

callahan 2006-03-20 14:41 Rev.: 33566

Remove bad ui_geometry line from .srn

0 lines of code changed in 2 files:

allen 2006-03-20 13:22 Rev.: 33564

remove bogus file

0 lines of code changed in 2 files:

allen 2006-03-20 13:20 Rev.: 33563

converted to srn

0 lines of code changed in 13 files:

allen 2006-03-20 13:16 Rev.: 33562

added geometry method to Module

106 lines of code changed in 6 files:

allen 2006-03-20 13:07 Rev.: 33561

converted to svn files

3224 lines of code changed in 18 files:

harman 2006-03-20 12:24 Rev.: 33560

connectionList no longer needed.

0 lines of code changed in 4 files:

mjc 2006-03-20 10:53 Rev.: 33559

.net files converted to .srn files

35430 lines of code changed in 415 files:

guilkey 2006-03-19 14:59 Rev.: 33558

--MPMMaterial.cc
includeFlowWork flag now defaults to false

--ICE.cc
Now using TMV in accumulateEnergy instead of cell_vol.
No longer compute press_force.

--MPMICE.cc
Don't use press_force to compute gradPAccNC anymore.
Don't do MPMICE::solveEquationsMotion, just use the MPM version now,
formerly, this task added gradPAccNC to the acceleration, but don't
do that now.
Now, in computeLagrangianValuesMPM, add mom_source and int_eng_source
at the cell centers to the values that come from the nodes.
In computeCCVelAndTempRates, dVdt is now computed from the difference
between the momentum at the top of the timestep, and the momentum following
exchange. Previously, it was only the change before and after exchange,
as the pressure gradient part had already been pushed to the nodes.

This will break the MPMICE RT, but shouldn't change ICE results.

47 lines of code changed in 4 files:

jas 2006-03-17 21:28 Rev.: 33557

1D heat conduction (matlab/octave) that uses the theta timestepping method
which includes explicit, mid-point, and implicit. Used for
verifying/validating Implicit MPM heat conduction.

301 lines of code changed in 1 file:

jfsheph 2006-03-17 20:12 Rev.: 33556

updating the frequency that the MeshSmoother progress reporter is updated

1 lines of code changed in 1 file:

harman 2006-03-17 18:40 Rev.: 33555

ICE.h
- updated prototypes.

__________________________________
AMRICE.h
- added bulletproofing tasks reflux_BP_zero_CFI_cells & reflux_BP_check_CFI_cells
They essentially keep track if all the CFI cells have been "touched" by the
refluxing tasks.

refluxOperator_applyCorrectionFluxes()
- increment the bulletproofing counter at each CFI cell

refluxOperator_computeCorrectionFluxes()
- don't eject from the task if this isn't the right coarsePatch/finePatch pair,
There are still CFI faces that need to be examined.

-increment the bulletproofing counter at each CFI cell
__________________________________
impAMRICE.cc
compute_refluxFluxes_RHS() & apply_refluxFluxes_RHS()
- keep track of the number of times a CFI cell has bee "touched"
__________________________________
AMRICE.cc
- added bulletproofing tasks reflux_BP_zero_CFI_cells & reflux_BP_check_CFI_cel
ls
They essentially keep track if all the CFI cells have been "touched" by the
refluxing tasks.

scheduleCoarsen()
-added bulletproofing tasks to test that all the CFI cells have been hit
when refluxing is turned on.

reflux_computeCorrectionFluxes()
- pass a counter into refluxOperator_computeCorrectionFluxes

refluxCoarseLevelIterator() ******* BIG CHANGES HERE!
- only test the bulletproofing if this is the right coarse/fine patch pair.
- added debugging code
- More restrictive conditional statement for isRight_CP_FP_pair.
- Only take the intersection of the coarse patch and fine patch in the
directions transverse to the face normal.

REFLUXING IS STILL NOT WORKING RIGHT

427 lines of code changed in 4 files:

callahan 2006-03-17 18:23 Rev.: 33554

Fix the percentage based update_progress function, contained bad math.

6 lines of code changed in 1 file:

guilkey 2006-03-17 18:20 Rev.: 33553

For AMR, don't require delT. Also, get delT according to Level.

3 lines of code changed in 1 file:

jfsheph 2006-03-17 17:35 Rev.: 33552

correctly hooking up the smoothing domain for quad and tri smoothing

16 lines of code changed in 2 files:

callahan 2006-03-17 17:26 Rev.: 33551

Better surface walking for InsertField on TriSurfMeshes.

55 lines of code changed in 1 file:

callahan 2006-03-17 17:26 Rev.: 33550

Minor clean up of includes

4 lines of code changed in 1 file:

allen 2006-03-17 17:06

updated to use the new get and send methods with ports

165 lines of code changed in 10 files:

mdavis 2006-03-17 15:53 Rev.: 33546

Make connections element optional for networks with no connections (such as a network w/ only one module)

1 lines of code changed in 1 file:

guilkey 2006-03-17 15:28 Rev.: 33545

mag_grad_press_CC is only computed for the press matl

1 lines of code changed in 1 file:

jfsheph 2006-03-17 14:29 Rev.: 33544

removing unneeded comment

0 lines of code changed in 1 file:

jfsheph 2006-03-17 14:28 Rev.: 33543

Hooking up boundary smoothing for hexes and tets

104 lines of code changed in 1 file:

yguo 2006-03-17 13:09 Rev.: 33542

Calculate KIII in conversion of J-integral into stress intensity factors.

81 lines of code changed in 1 file:

yguo 2006-03-17 13:06 Rev.: 33541

Output KIII.

8 lines of code changed in 1 file:

callahan 2006-03-17 11:41 Rev.: 33539

Don't send null handles after all.

5 lines of code changed in 1 file:

callahan 2006-03-17 11:26 Rev.: 33538

Change setOHandle to sendOHandle, use same caching default as port instead of opposite.

11 lines of code changed in 5 files:

jfsheph 2006-03-16 21:14 Rev.: 33537

moving MeshSmoother GUI initialization into the .cc file

2 lines of code changed in 2 files:

guilkey 2006-03-16 19:32 Rev.: 33536

Get rid of some commented out code that is definitely not coming back.

0 lines of code changed in 1 file:

jas 2006-03-16 19:20 Rev.: 33535

Conditional compilation based on the PETSC_VERSION_MINOR id. One can install
either petsc 2.2 or petsc 2.3.

49 lines of code changed in 4 files:

allen 2006-03-16 19:05 Rev.: 33534

bug fix for the state

1 lines of code changed in 1 file:

allen 2006-03-16 19:02 Rev.: 33533

clean so moduleexecutes only when needed

10 lines of code changed in 2 files:

callahan 2006-03-16 18:56 Rev.: 33532

Remove Module::pre_execute and Module::post_execute, put that functionality into the Module::do_execute wrapper for execute. Minor error checking cleanups for the new port access functions.

57 lines of code changed in 7 files:

callahan 2006-03-16 18:27 Rev.: 33531

Include required StringUtil.h so that new templates compile.

1 lines of code changed in 1 file:

allen 2006-03-16 18:06 Rev.: 33530

added more support fordynamic compiling

15 lines of code changed in 2 files:

allen 2006-03-16 18:05 Rev.: 33529

added dynamic port support in modules and clean related to the other port calls

275 lines of code changed in 12 files:

allen 2006-03-16 18:04 Rev.: 33528

removed set point and put functionality in the modules

0 lines of code changed in 10 files:

guilkey 2006-03-16 16:54 Rev.: 33526

Set d_with_ice so that ICE knows it's running an MPMICE calculation.
For now, this will not affect results.

1 lines of code changed in 1 file:

guilkey 2006-03-16 16:45 Rev.: 33525

Added d_with_mpm flag and setWithMPM function so that ICE will know
if it's doing MPMICE work. These are set in MPMICE, default is false.
If d_with_mpm then in accumulateEnergySources, the "A" term will use
TMV_CC in place of vol (the cell volume). For this commit, vol is still
used, as I don't want to break the RT until it's had a chance to pass
successfully again. Ultimately, this change should not affect ICE results,
only MPMICE results.

39 lines of code changed in 2 files:

callahan 2006-03-16 16:32 Rev.: 33524

Move module gui variable initialization into the .cc files.

210 lines of code changed in 74 files:

jfsheph 2006-03-16 16:11 Rev.: 33523

adding a GUI to the MeshSmoother module and hooking up a second smoothing scheme option. Also added an option to smooth the boundary, although this just produces a warning for the time being.

186 lines of code changed in 4 files:

callahan 2006-03-16 15:57 Rev.: 33522

Move module gui variable initialization into the .cc files.

192 lines of code changed in 69 files:

mjc 2006-03-16 13:51 Rev.: 33520

add conversion option from .net to .srn, which will save the .net to the same path replacing .net with .srn and exit scirun, fix bug with loading subnets from .srn files

65 lines of code changed in 6 files:

callahan 2006-03-16 12:10 Rev.: 33519

Move module gui variable initialization into the .cc files.

42 lines of code changed in 17 files:

callahan 2006-03-16 12:00 Rev.: 33518

Fix string initializer crash

6 lines of code changed in 1 file:

guilkey 2006-03-16 10:53 Rev.: 33517

Added a new ICE label, TMV_CC, forgot to check in last night.

4 lines of code changed in 2 files:

guilkey 2006-03-15 19:47 Rev.: 33515

BUG FIX:

This fixes a bug in the way the rho_CC is computed in
computeEquilibrationPressure. rho_CC should not change
in going through this task, but previously, rho_CC for MPM materials
was coming out as mass/(total material volume) instead of
mass/(cell volume) which it is now.

Also, now computing total material volume in each cell. This
will be used in the near future in ICE.

This commit will break the regression tester.

18 lines of code changed in 1 file:

jas 2006-03-15 19:17 Rev.: 33514

If can't find the <MPM> section exit.

3 lines of code changed in 1 file:

harman 2006-03-15 19:08 Rev.: 33513

turned off most of the IRIX tests

7 lines of code changed in 1 file:

guilkey 2006-03-15 18:59 Rev.: 33512

You can't have too many:

{

}
Well, maybe you can, but you can definitely have too few!

14 lines of code changed in 3 files:

callahan 2006-03-15 18:54 Rev.: 33511

Move module gui variable initialization into the .cc files.

88 lines of code changed in 22 files:

mdavis 2006-03-15 17:30 Rev.: 33510

When aborting on an unhandled thread Exception, print the Excepton backtrace, not only the niceAbort backtrace.

4 lines of code changed in 1 file:

guilkey 2006-03-15 17:26 Rev.: 33509

Quiet the material attribute spew.

1 lines of code changed in 1 file:

allen 2006-03-15 16:07 Rev.: 33508

removed the Module:: in the class definition

4 lines of code changed in 1 file:

callahan 2006-03-15 15:56 Rev.: 33507

Fix VolumeVisualizer oops, last checkin inadvertently removed a local tcl variable.

0 lines of code changed in 2 files:

worthen 2006-03-15 15:18 Rev.: 33506

Use correct files in RT, and turn off broken switcher for now

4 lines of code changed in 1 file:

jeroen 2006-03-15 14:39 Rev.: 33502

Oops: Bug fix in sparse-sparse

2 lines of code changed in 1 file:

jeroen 2006-03-15 11:13 Rev.: 33499

Fixing problems with templated functions

71 lines of code changed in 1 file:

jeroen 2006-03-15 11:07 Rev.: 33498

fixing compiler errors

3 lines of code changed in 3 files:

jeroen 2006-03-14 23:19 Rev.: 33497

fixing bug: accidently their was a Module.h included which should not be there

0 lines of code changed in 1 file:

worthen 2006-03-14 16:07 Rev.: 33495

Fix so it will 'compile' in python

8 lines of code changed in 1 file:

worthen 2006-03-14 15:43 Rev.: 33494

Add a set/get-able field for each face

8 lines of code changed in 1 file:

jas 2006-03-14 14:02 Rev.: 33493

Remove EROSION defines.

0 lines of code changed in 1 file:

mdavis 2006-03-14 12:19 Rev.: 33492

Shortcut to set brush value. Press 'v' key and enter value in terminal

9 lines of code changed in 1 file:

harman 2006-03-14 09:45 Rev.: 33491

added ability to run ice amr tests

23 lines of code changed in 1 file:

allen 2006-03-13 19:11 Rev.: 33490

added Topology and geometry basis for more generic mesh typing and removed old dynamic headers

54 lines of code changed in 6 files:

allen 2006-03-13 19:09 Rev.: 33489

added Topology and geometry basis for more generic mesh typing

51 lines of code changed in 14 files:

allen 2006-03-13 17:14

updates for XML2

5 lines of code changed in 13 files:

allen 2006-03-13 17:13 Rev.: 33485

added Joroen's handle methods and added state enums to guivar

348 lines of code changed in 8 files:

jas 2006-03-13 15:01 Rev.: 33484

Remove redundant functions.

6 lines of code changed in 8 files:

dav 2006-03-13 13:10 Rev.: 33483

Don't need to link in datatypes anymore as circular dependency in Core was removed.

0 lines of code changed in 1 file:

jas 2006-03-13 13:05 Rev.: 33481

Set the size of the temporary vector, d_t.

1 lines of code changed in 1 file:

jas 2006-03-10 21:17 Rev.: 33480

Add fracture regression test.

25 lines of code changed in 1 file:

allen 2006-03-10 18:56 Rev.: 33479

Updated state GuiVars.h and implemented usage in FieldSlicer.cc

114 lines of code changed in 3 files:

callahan 2006-03-10 18:04 Rev.: 33478

Add virtual destructor to NeuroFEM modules.

11 lines of code changed in 2 files:

callahan 2006-03-10 17:57 Rev.: 33477

Move module declaration into .cc file for GenStandardColorMaps

76 lines of code changed in 2 files:

callahan 2006-03-10 17:56 Rev.: 33476

Add virtual destructor to ApplyMappingMatrix

6 lines of code changed in 1 file:

callahan 2006-03-10 17:38 Rev.: 33475

Move module gui variable initialization into the .cc files. Also add some virtual destructors that were missing from modules.

204 lines of code changed in 48 files:

jas 2006-03-10 16:42 Rev.: 33474

Do not overwrite the C1 and C1 values during outputProblemSpec.

0 lines of code changed in 1 file:

callahan 2006-03-10 16:27 Rev.: 33473

Move module gui variable initialization into the .cc files.

423 lines of code changed in 113 files:

callahan 2006-03-10 14:55 Rev.: 33472

Remove unused variable, fix compilation warning.

0 lines of code changed in 1 file:

callahan 2006-03-10 14:52 Rev.: 33471

Move module gui variable initialization into the .cc files.

185 lines of code changed in 77 files:

allen 2006-03-10 14:14 Rev.: 33470

Added state to GuiVars.h and implemented usage in FieldSlicer.cc

111 lines of code changed in 2 files:

callahan 2006-03-10 11:02 Rev.: 33469

Consolidate the labelpair and labelentry helper functions into the base Module.tcl class.

97 lines of code changed in 15 files:

mjc 2006-03-10 09:53 Rev.: 33468

when loading srn networks, create and connect modules on the C side, then inform tcl about the actions, add optional arguments to tcl procs to allow just do the tcl work and not call back to C

116 lines of code changed in 6 files:

kuzimmer 2006-03-09 20:06 Rev.: 33466

initialize geomId in constructor

2 lines of code changed in 1 file:

harman 2006-03-09 15:39 Rev.: 33465

refluxCoarseLevelIterator()
- added to bulletproofing output more diagnostic information

13 lines of code changed in 1 file:

harman 2006-03-09 15:17 Rev.: 33464

- removed some old out-dated bulletproofing
- added bulletproofing to catch if the length of a fine level is not an
integer multiple of the cell spacing.

28 lines of code changed in 1 file:

borodai 2006-03-09 15:05 Rev.: 33463

MPMArches would restart a timestep now if told so by Arches.

10 lines of code changed in 2 files:

worthen 2006-03-09 14:24 Rev.: 33462

Fix a Single-proc ref-counted problem

4 lines of code changed in 1 file:

borodai 2006-03-09 13:29 Rev.: 33461

Added an option to restart a timestep when negative density guess is
encountered. It is useful for those hard to start cases like bonfire.

17 lines of code changed in 2 files:

borodai 2006-03-09 12:04 Rev.: 33460

Fixed molecular weight of CO2 fo carbon balance calculation.

1 lines of code changed in 1 file:

sbrown 2006-03-09 11:10 Rev.: 33459

SB: added support for methane and table headers

17 lines of code changed in 2 files:

callahan 2006-03-08 14:12 Rev.: 33453

Synchronize correct neighbors

1 lines of code changed in 1 file:

worthen 2006-03-08 13:29 Rev.: 33452

Fix so it *should* work on both osx and win32

50 lines of code changed in 1 file:

mdavis 2006-03-08 12:20 Rev.: 33451

Parse scirunrc in main, not in TCLThread where it may be too late for some sci_getenv calls

10 lines of code changed in 5 files:

callahan 2006-03-08 12:08 Rev.: 33450

minor cleanup, remove dead code

0 lines of code changed in 1 file:

ayla 2006-03-07 18:15 Rev.: 33449

Update SCIRun2 Dataflow component model to link with TCLThread changes. The Dataflow component model is still broken; a fix is on it's way.

73 lines of code changed in 4 files:

callahan 2006-03-07 17:53 Rev.: 33448

Fix progress reporting crash

5 lines of code changed in 3 files:

jas 2006-03-07 17:07 Rev.: 33447

Set the d_fracture flag.

1 lines of code changed in 1 file:

jfsheph 2006-03-07 16:55 Rev.: 33445

fixing function calls with new progress reporters so that code will compile...

7 lines of code changed in 2 files:

callahan 2006-03-07 15:51 Rev.: 33443

Use max_progress_ for fraction progress reporting function.

3 lines of code changed in 2 files:

callahan 2006-03-07 15:51 Rev.: 33442

Add progress reporting to several modules. Clean up ProgressReporter usage consistency.

272 lines of code changed in 40 files:

mdavis 2006-03-07 14:29 Rev.: 33440

Added #ifdef _WIN32 for windows specific code

2 lines of code changed in 1 file:

jfsheph 2006-03-07 14:03 Rev.: 33439

updating progress in IsoClip for hexes and MeshSmoother modules, and removed an unneeded warning in IsoClip.

124 lines of code changed in 2 files:

jfsheph 2006-03-07 13:14 Rev.: 33435

commenting out an unneeded define that prevented correct compile for McKay

1 lines of code changed in 1 file:

mdavis 2006-03-07 12:59 Rev.: 33433

Fix undefined symbols

2 lines of code changed in 1 file:

mdavis 2006-03-07 12:01 Rev.: 33432

Add ITk, ITCL, BLT, and Core/Comm to fix OSX build

0 lines of code changed in 2 files:

jeroen 2006-03-06 20:10 Rev.: 33430

Example of building a stand alone dynamically compiling algorithm. I soon want to transfer a whole range of algorithms from my packages into the core as pure algorithms that can be reused by other modules.

545 lines of code changed in 5 files:

mdavis 2006-03-06 20:02 Rev.: 33429

#include tcl.h before TCLCONST. External tk procs TCLCONST fixes

5 lines of code changed in 2 files:

callahan 2006-03-06 18:51 Rev.: 33428

Add progress reporting to several modules.

80 lines of code changed in 8 files:

callahan 2006-03-06 18:32 Rev.: 33427

Use pretty green color for progress updating meter.

5 lines of code changed in 2 files:

callahan 2006-03-06 18:28 Rev.: 33426

Add new ProgressReporter progress reporting update functions.

64 lines of code changed in 5 files:

callahan 2006-03-06 18:13 Rev.: 33425

Fix minor compiler warning

3 lines of code changed in 1 file:

jfsheph 2006-03-06 17:55 Rev.: 33424

outputting correct interp matrix from IsoClip module for hexes. Thanks to Marty for his help on this one...

131 lines of code changed in 1 file:

dgroulx 2006-03-06 16:53 Rev.: 33423

Included ctype.h, since toupper and tolower were not found, preventing scirun from building.

1 lines of code changed in 1 file:

mdavis 2006-03-06 16:51 Rev.: 33422

Fix bug when PauseEventMessag is deleted before accessing member variable tcl_interface_

2 lines of code changed in 1 file:

mdavis 2006-03-06 16:01 Rev.: 33421

Fix broken volume rendering

1 lines of code changed in 1 file:

mdavis 2006-03-06 15:55 Rev.: 33420

General cleanup of the TCL/Tk threading code.

Move tkAppInit code into TCLThread::startNetworkEditor. This allowed for removal of TCLThread::mainloop_waitstart(), TCLThread::mainloop_wait(), & TCLThread::release_mainloop() and their semaphores.

Added TCLInterface::pause(), and TCLInterface::unpause() methods to pause tcl thread when doing X11 calls in anohter thread.

Cleanup main, mostly by moving all TCL code into TCLThread class. Also minor cleanup by passing stacksize to constructor of Thread class.

Split constructor of TkOpenGLContext into make_x11_gl_context, and make_win32_gl_context.

Removed Core/TkExtensions/TkAppInit.c, all init code now in Dataflow/TCLThread/TCLThread.cc

637 lines of code changed in 16 files:

worthen 2006-03-06 15:28 Rev.: 33419

add the component name to the input file, and have the RT use it. Also get rid of extra sus flags (also added to the input file)

241 lines of code changed in 29 files:

jeroen 2006-03-06 14:05 Rev.: 33418

First check-in of part of the new modules to do discrete multidomain

2769 lines of code changed in 26 files:

jeroen 2006-03-06 13:59 Rev.: 33417

Updates of functions that are called by the CardioWave interface

6131 lines of code changed in 97 files:

jeroen 2006-03-06 13:47 Rev.: 33416

Adding all files in the newly created directory

1 lines of code changed in 1 file:

jeroen 2006-03-06 13:47 Rev.: 33415

Moving classes for simplifying dynamic compilation here

1210 lines of code changed in 7 files:

jeroen 2006-03-06 13:45 Rev.: 33414

Moving FieldInformation to a different directory to avoid circular dependencies

2 lines of code changed in 5 files:

ayla 2006-03-06 12:58 Rev.: 33413

Fix VTK configuration.

19 lines of code changed in 2 files:

jeroen 2006-03-05 19:11 Rev.: 33410

Fixing sparse matrix loading. Due to some speed ups in scanning files, sparse matrices were not properly recognized. This has been fixed.

8 lines of code changed in 3 files:

jeroen 2006-03-05 19:09 Rev.: 33409

Speeding up algorithm for sparse-sparse multiplication. The old algorithm became dramatically slow when dealing with large very sparse matrices. Hence multiplying mapping matrices became troublesome. This patch should fix that. Tested the code for small and large matrices and it should give a huge speed up for large sparse-sparse multiplications

84 lines of code changed in 3 files:

mdavis 2006-03-05 13:12 Rev.: 33408

Add stacksize parameter to constructor to allow construction of thread with non-default stacksize in active state. If parameter is not passed it defaults to 128 Kilobytes (what it always has been). Changed #define THREAD_DEFAULT_STACKSIZE to static const int Thread::DEFAULT_STACKSIZE.

18 lines of code changed in 2 files:

ayla 2006-03-03 18:21 Rev.: 33407

Add default CCA XML path to framework SIDL XML paths if the user has set SIDL_XML_PATH in the environment and forgot to add a path to the default CCA components, such as the GUI Builder.

17 lines of code changed in 1 file:

ayla 2006-03-03 15:39 Rev.: 33406

Quick updates to get Qt config working until gui changeover.

31 lines of code changed in 2 files:

mdavis 2006-03-03 15:11 Rev.: 33405

Allow loading of .app extension to fix bug of PowerApps not starting. Added string_toupper and stirng_tolower. Allows loading of network files w/ capital characters in allowd extensions

40 lines of code changed in 4 files:

jfsheph 2006-03-03 14:24 Rev.: 33404

Detaching mesh so that previous states aren't updated as nodes within the mesh are optimized. Also added updates to the ProgressReporter for smoothing of surface meshes which can take some time to complete.

58 lines of code changed in 2 files:

jas 2006-03-03 13:57 Rev.: 33401

Removed some duplicate function declarations in FractureMPM.cc that were
present in SerialMPM.cc. Changed some function declarations to virtual.

78 lines of code changed in 4 files:

harman 2006-03-03 10:53 Rev.: 33400

refluxCoarseLevelIterator()
- added bullet proofing
a) if l == h throw an exception
b) if abs(l-h) > 1 throw an exception
- add a shift to h ONLY if the refinement ratio is 1 and ONLY on the minus faces,
yuck.

35 lines of code changed in 1 file:

mjc 2006-03-03 10:21 Rev.: 33399

add and use unsynchronize call in hexvolmesh. This method clears all synchronized data and resets the flags,so that these can be recomputed on next synchronize

39 lines of code changed in 2 files:

mjc 2006-03-03 09:37 Rev.: 33398

assert that we have synchronized for normals in get_normal accessors

8 lines of code changed in 1 file:

harman 2006-03-02 18:23 Rev.: 33397

more bulletproofing. If beginIndex = endIndex throw an exception

7 lines of code changed in 1 file:

callahan 2006-03-02 18:18 Rev.: 33396

Cleanup insertion of edges into a TriSurfMesh code, fix new points scoping problem that would cause them to be duplicated.

5 lines of code changed in 1 file:

borodai 2006-03-02 18:13 Rev.: 33395

Just so Mr. G. can keep doing nothing.

MMS initial fields from the ICE and MMS
module are exactly the same now. Major changes:

1. MMS module can now operate on u and v velocity components
from VectorFieldOperator.
2. MMS module computes MMS solution correctly (I hope) now
(by both allcating fields correctly and using physical
coordinates for MMS solution instead of indexes).
3. ICE MMS bc's for pressure have been set to Neumann
no to trigger outer iteration.
4. MMS bc's in ICE have to use t+deltaT for current time.
5. ICE ups file has been changed to match MMS default
parameters.
6. SCIRun example file to view MMS have been added.

61 lines of code changed in 12 files:

callahan 2006-03-02 18:11 Rev.: 33394

Reimplement insertion of edges into a TriSurfMesh.

33 lines of code changed in 1 file:

mdavis 2006-03-02 17:39 Rev.: 33393

Remove dead TCLTask code. Move TCLTask::lock/unlock functionality into new Core/Thread/ThreadLock class. Now, TCLTask is just a skeleton static class to encapsulate one instance of a ThreadLock.

181 lines of code changed in 8 files:

jfsheph 2006-03-02 16:57 Rev.: 33392

updating MeshSmoother help tags

6 lines of code changed in 1 file:

callahan 2006-03-02 15:52 Rev.: 33391

Fix neighbor computations for insert_node_in_face

24 lines of code changed in 1 file:

worthen 2006-03-02 15:42 Rev.: 33390

Allow CCVariable<Stencil7> to be dumped from lineextract, and changes to sus to be able to dump 'matrix'

27 lines of code changed in 8 files:

harman 2006-03-02 14:21 Rev.: 33389

added progressive warning if the user specifies a beginning or ending index that
is off of the level

32 lines of code changed in 1 file:

mjc 2006-03-02 13:01 Rev.: 33388

only allow saving files with extension .srn, only attempt to load files whose extension is .srn or .net, rename old .sr and .uin files to have a .net extension, fix subnet rewriting, make subnets save/load correct extensions

873 lines of code changed in 22 files:

jfsheph 2006-03-02 12:47 Rev.: 33387

adding some additional synchronize calls to avoid some potential NULL dereferencing.

5 lines of code changed in 1 file:

jfsheph 2006-03-02 12:41 Rev.: 33386

adding smart laplacian smoothing for TriSurfMesh and QuadSurfMesh types. The QuadSurfMesh smoother uses a TriSurfMesh as the domain which is created from the original QuadSurfMesh, which is not ideal, but until the needed domain functions are available in the QuadSurfMesh class, this should be a reasonable work around. Also, the surface smoothers are pretty slow due to the need to call TriSurfMesh::find_closest_face for many of the quality and movement functions. Optimization of this function will dramatically improve the performance of the surface smoothers.

121 lines of code changed in 5 files:

worthen 2006-03-02 12:09 Rev.: 33385

Put the timestep# printing back to how it used to be (but in the same place it is now)

7 lines of code changed in 3 files:

worthen 2006-03-02 11:06 Rev.: 33384

Fix destruction of lineExtract (and init the analysisModule in ICE just in case)

2 lines of code changed in 2 files:

callahan 2006-03-02 10:10 Rev.: 33383

More InsertField work

30 lines of code changed in 2 files:

harman 2006-03-01 17:27 Rev.: 33382

updatePressure()
- set the boundary condition on impDelP before you
press_CC = press_equil + sum_imp_delP

At coarse fine interfaces there imp_delP_fine = imp_delP_coarse

3 lines of code changed in 1 file:

harman 2006-03-01 17:21 Rev.: 33381

refluxCoarseLevelIterator()
on x-, y-, z- faces shift the upper bound of the iterator by -1.
Previously, there was no shift and the the refluxing corrections were applied
to 2 layers of cells on the (x,y,z)- faces.

19 lines of code changed in 3 files:

mdavis 2006-03-01 15:33 Rev.: 33380

Fix incorrect rendering of colormap upon opening dialog

3 lines of code changed in 2 files:

callahan 2006-03-01 14:27 Rev.: 33379

Temporary checkin of untested Edge insertion into Triangle meshes.

70 lines of code changed in 1 file:

mdavis 2006-03-01 12:54 Rev.: 33378

Dont render volume quadrant closest to eye in BioImage. Not the best method, but works for Tommy's demo

106 lines of code changed in 11 files:

jfsheph 2006-03-01 10:57 Rev.: 33377

Adding a shape improvement wrapper (although not hooked up) to the MeshSmoother. Also, changing the way the boundaries are found and fixed to allow for surface meshes and templating in preparation for smoothing TriSurfMeshes.

547 lines of code changed in 4 files:

jfsheph 2006-03-01 10:41 Rev.: 33376

only project faces which were not on the old boundary when creating a new hexahedral sheet of elements

95 lines of code changed in 1 file:

harman 2006-03-01 09:55 Rev.: 33375

added bullet proofing: If the user specifies a starting or ending index that isn't
on the level of interest the throw a warning and exit.

6 lines of code changed in 1 file:

mjc 2006-03-01 09:46 Rev.: 33374

Initial commit of new module that outputs surface normals per node, and its test network

491 lines of code changed in 5 files:

mjc 2006-03-01 09:45 Rev.: 33373

assert appropriate synchronize state in get_elems

4 lines of code changed in 2 files:

February 2006 »

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