April 2006 Commit Log

Number of Commits:
252
Number of Active Developers:
22
mjc 2006-04-29 00:03 Rev.: 34054

fixes for insertion code

59 lines of code changed in 1 file:

jeroen 2006-04-28 23:09 Rev.: 34053

bug fixes

0 lines of code changed in 2 files:

jeroen 2006-04-28 23:04 Rev.: 34052

bug fixes

24 lines of code changed in 4 files:

jeroen 2006-04-28 21:04

Remove workaround for non unique numbers in TetVolMesh

2067 lines of code changed in 4 files:

jeroen 2006-04-28 21:03 Rev.: 34049

Fixed bug in synchronization, while one module synchronized the EGDES of FACES the other module would wait and then synchronize again. Hence one module would be executing cute while the other was synchronizing the mesh element involved, leading to a sigbus error.

6 lines of code changed in 1 file:

callahan 2006-04-28 16:50 Rev.: 34048

Add PNG support for movie output.

122 lines of code changed in 5 files:

callahan 2006-04-28 16:50 Rev.: 34047

Lock scheduler callback access.

0 lines of code changed in 4 files:

callahan 2006-04-28 15:56 Rev.: 34046

Fix PNG saving memory leak

2 lines of code changed in 1 file:

callahan 2006-04-28 15:40 Rev.: 34045

Only initialize PNG structures when writing a PNG.

27 lines of code changed in 1 file:

mjc 2006-04-28 13:09 Rev.: 34044

provide sequential indeces for faces and edges, Note: major internal changes, Insertion function fixes pending..

655 lines of code changed in 1 file:

mjc 2006-04-28 13:06 Rev.: 34043

formatting

0 lines of code changed in 2 files:

mjc 2006-04-28 13:05 Rev.: 34042

partial crash fixes

88 lines of code changed in 1 file:

bigler 2006-04-28 11:27 Rev.: 34040


If an alien thread tries to call Semaphore::down Thread::self() will
be null, and it is just no fun to have your code crash and burn. You
only need the Thread::self for debugging book keeping, which isn't
essential.

8 lines of code changed in 1 file:

harman 2006-04-28 10:46 Rev.: 34039

fixed typo

1 lines of code changed in 1 file:

harman 2006-04-28 10:35 Rev.: 34038

-Gentle cleaning
Added a ups switch for outputing the system of equations

19 lines of code changed in 4 files:

mjc 2006-04-28 10:30 Rev.: 34037

remove retired module

0 lines of code changed in 4 files:

callahan 2006-04-27 17:28 Rev.: 34036

Fold VolumeRenderer::multi_layer_draw into draw_volume.

229 lines of code changed in 6 files:

callahan 2006-04-27 14:50 Rev.: 34035

Remove more differences between VolumeRenderer::draw_volume and multi_level_draw

100 lines of code changed in 1 file:

sachse 2006-04-27 10:33 Rev.: 34034

bug fix

5 lines of code changed in 1 file:

jeroen 2006-04-27 00:27 Rev.: 34033

Adding a module to compute conduction velocity

296 lines of code changed in 13 files:

guilkey 2006-04-26 20:29 Rev.: 34031

Make the implicit models use total nodal displacement when
d_doGridReset==false. Get ViscoTransIsoHyperImplicit working,
clean up other models. Verified implementation of:

ViscoTransIsoHyper.cc
TransIsoHyperImplicit.cc
ViscoTransIsoHyperImplicit.cc

against implementations in NIKE3D.

1156 lines of code changed in 9 files:

guilkey 2006-04-26 20:22 Rev.: 34030

Compute total nodal displacement if d_doGridReset==false

138 lines of code changed in 2 files:

callahan 2006-04-26 17:15 Rev.: 34029

Don't draw completely masked bricks.

4 lines of code changed in 1 file:

callahan 2006-04-26 16:37 Rev.: 34028

Add cutting plane and additional shader parameter support to VolumeRenderer::multi_level_draw.

29 lines of code changed in 1 file:

callahan 2006-04-26 16:11 Rev.: 34027

Clean up VolumeRendering.cc, remove gratuitous differences between draw_volume and multi_level_draw, more

68 lines of code changed in 1 file:

callahan 2006-04-26 16:11 Rev.: 34026

indent properly

888 lines of code changed in 1 file:

sachse 2006-04-26 15:59 Rev.: 34025

support for basis==nodata added

20 lines of code changed in 1 file:

callahan 2006-04-26 15:30 Rev.: 34024

Clean up VolumeRendering.cc, remove gratuitous differences between draw_volume and multi_level_draw.

99 lines of code changed in 1 file:

worthen 2006-04-26 15:11 Rev.: 34023

SimCont: change pposition of 'MB' in mem use printout. Maybe Todd's gnuplots will still work with it
AMRSimCont: scheduleRefineInterface with old=0, new=1 at final interface, so (mpmice anyway) restarts will work
DW: don't store null patches

8 lines of code changed in 3 files:

callahan 2006-04-26 14:21 Rev.: 34022

Remove unimplemented and unused get_edges and get_faces functions from PrismVolMesh.

1 lines of code changed in 1 file:

callahan 2006-04-26 13:43 Rev.: 34021

Remove unimplemented get_edges(edges, BBox) functions

0 lines of code changed in 3 files:

callahan 2006-04-26 13:31 Rev.: 34020

Implement unimplemented functions

8 lines of code changed in 1 file:

callahan 2006-04-26 13:14 Rev.: 34019

Fix not implementeds for get_normals

1 lines of code changed in 1 file:

worthen 2006-04-26 11:52 Rev.: 34018

Fix periodic boundaries

8 lines of code changed in 3 files:

callahan 2006-04-26 11:44 Rev.: 34017

Fix not implementeds for get_normals

24 lines of code changed in 9 files:

jeroen 2006-04-26 10:09 Rev.: 34016

fix filenames, so everyone can use example net

0 lines of code changed in 2 files:

guilkey 2006-04-26 09:33 Rev.: 34015

Fix some bugs accidentally checked in two days ago.

3 lines of code changed in 1 file:

jeroen 2006-04-26 01:35 Rev.: 34014

Update package with latest developments

975 lines of code changed in 21 files:

sachse 2006-04-25 17:56 Rev.: 34013

help text corrected

1 lines of code changed in 1 file:

sachse 2006-04-25 17:50 Rev.: 34012

New standalone for converting linear to quadratic meshes

215 lines of code changed in 2 files:

dav 2006-04-25 16:19 Rev.: 34011

M Render/ViewWindow.h
M Render/ViewWindow.cc

- Renamed setMessage() to much more explanatory setMovieMessage().
Added comments on what movie functions do. Print out the error
message in only one spot.

- Turned off the movie making if there is an error!

M Render/Viewer.h

Uses string, so included it.

M Render/OpenGL.h

Untabified.

M Render/OpenGL.cc

Use setMovieMessage() and pass in a flag when there is an error so
movie creation can be stopped.

131 lines of code changed in 6 files:

dav 2006-04-25 16:13 Rev.: 34010

M Packages/Uintah/Dataflow/Modules/Selectors/FieldExtractor.cc

Added the spacial range of the field as a property of the field for
use downstream. James, Kurt, is this the right way to send this type
of information around?

M Packages/Uintah/StandAlone/sub.mk

Don't link against the components directly anymore... (except under AIX).

M Packages/Uintah/Core/Grid/Grid.cc
M Packages/Uintah/Core/Grid/Grid.h

Added a getInteriorSpatialRange() function that gives the exact
boundaries of the grid (as specified in the .ups file).

M Packages/Uintah/Core/Grid/Box.h

Cleaned up syntax.

M Packages/Uintah/Dataflow/Modules/Selectors/TimestepSelector.cc

Added a comment.

M Packages/Uintah/Dataflow/Modules/Operators/CompareMMS.cc

Added example of getting spacial data from the field. Added the name
of the variable to the output field so it can be used downstream.

M Core/Geometry/BBox.h
M Core/Geometry/BBox.cc

Added << operator.

92 lines of code changed in 10 files:

worthen 2006-04-25 14:59 Rev.: 34009

DWDatabase: fix memory leak
Single/MPI Scheduler: scinew instead of new SubScheduler
DataWarehouse: better debug info
SerialMPM: remove debug info
AMRSimCont: schedule initial timestep regridding iff doing amr

10 lines of code changed in 6 files:

worthen 2006-04-25 14:52 Rev.: 34008

Also change array tag with AllocatorSetDefaultTagNew

0 lines of code changed in 2 files:

callahan 2006-04-25 14:35 Rev.: 34007

Make TetVolMesh::get_edges return a unique edge ID rather than the half-edge.

7 lines of code changed in 1 file:

jeroen 2006-04-25 14:33 Rev.: 34006

Fix sprintf, there was duplicate code that caused the module to crash

3 lines of code changed in 1 file:

mjc 2006-04-25 14:05 Rev.: 34005

fix double deletion crash

0 lines of code changed in 1 file:

callahan 2006-04-25 14:02 Rev.: 34004

Only get_edges in ElemData if it's needed by the basis.

6 lines of code changed in 2 files:

jfsheph 2006-04-25 13:55 Rev.: 34003

removing unneeded commenting...

1 lines of code changed in 3 files:

jfsheph 2006-04-25 13:50 Rev.: 34002

Changing IsoClip(hex) to project to an isosurface rather than a field boundary which gives more appropriate results...

360 lines of code changed in 2 files:

harman 2006-04-25 13:46 Rev.: 34001

Globally:
formatting
- renamed a bunch of non-descriptive bool

problemSetup()
Added models refluxing section.

90 lines of code changed in 1 file:

jfsheph 2006-04-25 13:43 Rev.: 34000

Changing an iterator to a const_iterator to avoid compiler errors.

1 lines of code changed in 1 file:

dav 2006-04-25 12:26 Rev.: 33999

M main/sub.mk

Link 'scirun' against libxml2 (even though the scirun executable
doesn't actually use it). The reason for this is that on the Mac (OSX
8.5 specifically), scirun was somehow using BOTH the 3rd party and the
/usr/lib version of libxml2. This fixes that problem.

5 lines of code changed in 1 file:

callahan 2006-04-25 12:11 Rev.: 33998

Make TetVolMesh::get_faces return a unique face ID rather than the half-face. Fix get_neighbors to use the new face ID.

15 lines of code changed in 1 file:

callahan 2006-04-25 11:04 Rev.: 33997

Fix compiler warnings

664 lines of code changed in 1 file:

callahan 2006-04-25 11:04 Rev.: 33996

Remove unimplemented get_edges and get_faces functions

0 lines of code changed in 1 file:

mjc 2006-04-25 10:54 Rev.: 33995

only init edges_ in ElemData when the basis is order > 1

4 lines of code changed in 1 file:

allen 2006-04-25 10:54 Rev.: 33994

add usigned ints to remove warning messages

0 lines of code changed in 2 files:

mjc 2006-04-25 10:53 Rev.: 33993

make polynomial_order static

23 lines of code changed in 39 files:

allen 2006-04-25 10:53 Rev.: 33992

rewrote so that the normal of a plane or the tangent of line are rotated into the desireed axis

0 lines of code changed in 6 files:

darbyb 2006-04-25 09:45 Rev.: 33991

Fix PowerApps due to changes in Choose modules. The port-index variable was renamed to port-selected-index and the choose modules needed to be set to not use the first valid field.

311 lines of code changed in 3 files:

guilkey 2006-04-24 20:36 Rev.: 33990

Compute deformation gradient (F) from total nodal displacements when
d_doGridReset==false. Previously, the incrememntal calculation of F
was not done correctly for the case when the grid is not reset.

In each of the following models, F is now computed for each particle
distinct from the rest of the model implementation, and this is done so
in one of two ways, depending on the d_doGridReset flag.

In the base class, implemented:

computeDeformationGradientFromVelocity
and:
computeDeformationGradientFromDisplacement

for use as described above. Updated the computeGrad function in the .h
file so that it will work when using either 8or27 node integration. Lastly,
the code associated with fracture was removed from each of these files, as
it seems that (based on the inputs directory) none of them was being used
with fracture, and keeping it around would require more maintenance. If this
is an incorrect assumption, please let me know.

221 lines of code changed in 7 files:

allen 2006-04-24 18:26 Rev.: 33989

clean up and fixed bugs for disabled ports

69 lines of code changed in 5 files:

guilkey 2006-04-24 18:11 Rev.: 33988

Compute total grid displacements if (d_doGridReset==false).

35 lines of code changed in 1 file:

jeroen 2006-04-24 17:37 Rev.: 33987

BUG FIX: FData2D and FData3D did not give back the proper typename, which caused that files containing these classes could not be opened.

0 lines of code changed in 2 files:

callahan 2006-04-24 17:13 Rev.: 33986

Use const references for ElemData return values where applicable.

44 lines of code changed in 11 files:

jfsheph 2006-04-24 16:41 Rev.: 33985

Continuing efforts and cleanups...

53 lines of code changed in 5 files:

jeroen 2006-04-24 16:29 Rev.: 33984

Disable box around label as it not always fits around the text properly

0 lines of code changed in 2 files:

jeroen 2006-04-24 16:27 Rev.: 33983

Fixed text in GUI: Clock->String

0 lines of code changed in 2 files:

mdavis 2006-04-24 16:22 Rev.: 33982

Match SCIRUN_RCFILE_VERSION, to main/sci_version.h

0 lines of code changed in 4 files:

jeroen 2006-04-24 16:09 Rev.: 33981

Adding Filename output ports so one can display the names of the datasets directly in the viewer window using ShowString.

0 lines of code changed in 24 files:

harman 2006-04-24 15:36 Rev.: 33980

added processor MPI rank to cout_doing statements

32 lines of code changed in 3 files:

guilkey 2006-04-24 14:38 Rev.: 33979

Moved d_doGridReset, d_min_part_mass and d_max_vel into MPMFlags
where they belong.

23 lines of code changed in 8 files:

jeroen 2006-04-24 13:46 Rev.: 33978

Adding Filename output ports for file readers so one can add the filename in the viewer automatically. Fixing problem with std namespaces being added by SCIRun include files. Using explicit namespace declarations to avoid problem by spill over of other namespaces included using 'using namespace'

76 lines of code changed in 19 files:

harman 2006-04-24 10:10 Rev.: 33975

added a ICE JP8 fire with radiation to the RT.

5 lines of code changed in 3 files:

jeroen 2006-04-24 01:16 Rev.: 33973

Fix the FE builder for Curves/Lines and add documentation describing what the FE builder deos

279 lines of code changed in 5 files:

jeroen 2006-04-24 01:13 Rev.: 33972

bug fixes

490 lines of code changed in 31 files:

banerjee 2006-04-23 20:18 Rev.: 33971

Added math.h for IRIX compile.

0 lines of code changed in 4 files:

banerjee 2006-04-22 19:13 Rev.: 33970

Added option to create part of a cylinder using input angle.

25 lines of code changed in 2 files:

banerjee 2006-04-22 19:12 Rev.: 33969

Update for extract stress and partextract.
Added selectpart to sub.mk.
Updated parameters for JohnsonCook plasticity model for 4340 steel.

344 lines of code changed in 4 files:

banerjee 2006-04-22 19:05 Rev.: 33968

Updated ElasticPlastic and HypoeElasticPlastic.

134 lines of code changed in 3 files:

banerjee 2006-04-22 19:00 Rev.: 33967

Added:

Specific Heat Models
BPS melting model
Updates to Johnson-Cook and MTS plasticity models.
Update of PlasticityState.
Update of NP shear modulus model.
Update of Mie-Gruneisen EOS.
Update of Validation routines and data.

2559 lines of code changed in 47 files:

mjc 2006-04-21 18:01 Rev.: 33960

add get_face function that will provide a face index given the node indeces for the face, returns false if no such face exits

24 lines of code changed in 1 file:

mdavis 2006-04-21 17:40 Rev.: 33959

Fix port drawing for subnets

0 lines of code changed in 2 files:

worthen 2006-04-21 16:34 Rev.: 33958

Fix base dynamic compilation on windows

14 lines of code changed in 2 files:

harman 2006-04-21 14:49 Rev.: 33956

fixed typo

4 lines of code changed in 1 file:

worthen 2006-04-21 11:13 Rev.: 33955

fix windows compile for scirun

21 lines of code changed in 11 files:

dav 2006-04-21 11:10 Rev.: 33954


Updates to handle Shell pieces correctly. Before, shell pieces were
specified inside of a <shell> node... now they are specified just like
everything else, eg: <sphere_shell>. I tested a number of the shell
(ups) input files and receive the same results as before my geom obj
changes. This isn't to say that they work... There appear to be many
problems with the shell input files, but to the best of my knowledge
and testing, my changes have not broken anything else. -Dav


33 lines of code changed in 5 files:

mjc 2006-04-21 10:29 Rev.: 33953

add env var that forces the use of default settings and autoview on network load when set to true

11 lines of code changed in 3 files:

dav 2006-04-21 09:39 Rev.: 33952

Required libs for Mac build

2 lines of code changed in 3 files:

mjc 2006-04-20 19:28 Rev.: 33951

add toggle to control the automatic autoview, by default this option is off. turn it on to get your viewer to autoview with every load of a new network

23 lines of code changed in 6 files:

jfsheph 2006-04-20 17:04 Rev.: 33950

Printing additional error information to stdout when MESQUITE encounters an error

12 lines of code changed in 1 file:

worthen 2006-04-20 16:21 Rev.: 33949

Turn off logging AND petsc debugging, and remove some AMRICE spew

25 lines of code changed in 2 files:

dav 2006-04-20 15:19 Rev.: 33948

I assume this is a void function... correct me if I am wrong.

0 lines of code changed in 2 files:

guilkey 2006-04-20 15:18 Rev.: 33947

Please don't check this in with LOG #defined.

2 lines of code changed in 1 file:

dav 2006-04-20 15:06 Rev.: 33946

Updates for Bryan's new world order.

1 lines of code changed in 1 file:

mjc 2006-04-20 14:50 Rev.: 33945

fix circular dependency

8 lines of code changed in 5 files:

worthen 2006-04-20 13:56 Rev.: 33943

Lots of changes: In individual components' code: scheduleTimeAdvance and scheduleRefineInterface API change And if you create a subscheduler, the initializing of Parent DWs is now in a different call Schedulers:
DWDatabase overhaul - no more template on var type and no more nested structs
Multi-TaskGraph model
Retire NullScheduler and SimpleScheduler
Retire Scheduler3 (all of its changes were already integrated)

ICE
optionally use multiTaskgraph mode
don't recompile subscheduler TG unless outer TG recompiles

PatchCombiner
Remove OnDemandDataWarehouse dependency
make UdaReducer AMR-compliant

Retire many VarLabelMatl/Patch/Level structs

2178 lines of code changed in 123 files:

worthen 2006-04-20 13:34 Rev.: 33942

Fix crash on freeing the exception

0 lines of code changed in 2 files:

harman 2006-04-20 13:06 Rev.: 33941

SimulationState.cc
__________________________________
added methods to sharedState
- isRegridTimestep()
- setRegridTimestep()

AMRSimulationController.cc
__________________________________
added calls to setRegridTimestep()

ICE Advection
__________________________________
With a new grid initialize temporary variables used
in the advection operator to EVILNUM.


79 lines of code changed in 12 files:

mjc 2006-04-20 12:41 Rev.: 33940

notes before gui_callbacks

0 lines of code changed in 2 files:

mjc 2006-04-20 12:08 Rev.: 33939

always use line width 1.0 when rendering edges as lines

2 lines of code changed in 1 file:

mjc 2006-04-20 11:04 Rev.: 33938

fix calculate defaults, add option to automaticaly use defaults when a new field loads, provide test networks that use default values

242 lines of code changed in 5 files:

mjc 2006-04-20 11:02 Rev.: 33937

force autoview on loading a new network

28 lines of code changed in 4 files:

dgroulx 2006-04-20 00:06 Rev.: 33935

Updated the version to match the 3rd party it requires.

1 lines of code changed in 1 file:

jas 2006-04-19 17:27 Rev.: 33931

Don't display the KE matrix.

0 lines of code changed in 1 file:

callahan 2006-04-19 17:25 Rev.: 33930

Fix crash bugs associated with elem_epsilon_ not being copied in copy constructor.

12 lines of code changed in 2 files:

jas 2006-04-19 17:12 Rev.: 33929

Add 2 & 3d versions of octave(matlab) code for solving the heat equation.

1028 lines of code changed in 3 files:

sbabaeiz 2006-04-19 16:55 Rev.: 33928

For SetupEITMatrix module

112 lines of code changed in 1 file:

sbabaeiz 2006-04-19 16:49 Rev.: 33927

Solved the forward problem of EIT

529 lines of code changed in 2 files:

dav 2006-04-19 16:46 Rev.: 33926

M HeuristicStreamLines.h

It is technically illegal to this:

double weights[dofs];

where 'dofs' is not a constant. Many newer compilers will take care
of things for you, but some won't. What you should do is 'new' it,
and then 'delete' it yourself. This is the fix I have commited.
Please verify that I got it right.

2 lines of code changed in 1 file:

callahan 2006-04-19 16:10 Rev.: 33925

Add progress reporting to the DirectMapping module.

33 lines of code changed in 3 files:

harman 2006-04-19 15:45 Rev.: 33924

Partial resurrection of calculating the mixture fraction variance for mixing tables.

63 lines of code changed in 14 files:

sbabaeiz 2006-04-19 14:23 Rev.: 33921

adding SetupEITMatrix which solves the forward problem of EIT

2 lines of code changed in 1 file:

jeroen 2006-04-19 13:34 Rev.: 33918

Bug fix

0 lines of code changed in 2 files:

callahan 2006-04-19 10:54 Rev.: 33915

Minor cleanup

3 lines of code changed in 1 file:

mjc 2006-04-19 10:20 Rev.: 33914

revert broken changes

105 lines of code changed in 1 file:

jeroen 2006-04-19 09:53 Rev.: 33913

BUG fix

4 lines of code changed in 1 file:

jeroen 2006-04-19 09:41

bug fixes

128 lines of code changed in 8 files:

mjc 2006-04-19 09:08 Rev.: 33910

support loading Properties of NodeIndex of unsigned int

0 lines of code changed in 2 files:

mjc 2006-04-19 09:07 Rev.: 33909

add debugging table output

0 lines of code changed in 2 files:

jeroen 2006-04-18 19:48 Rev.: 33908

add Frank's edits to FEM generation to Module-less copy

6 lines of code changed in 1 file:

jeroen 2006-04-18 19:38 Rev.: 33907

Added a special linear stiffness matrix generator to speed up the code

0 lines of code changed in 6 files:

sachse 2006-04-18 19:03 Rev.: 33906

bug fix jacobian ordering

40 lines of code changed in 1 file:

sachse 2006-04-18 19:03 Rev.: 33905

bug fix quadrature

7 lines of code changed in 1 file:

dav 2006-04-18 18:06 Rev.: 33904


(This should have gone in with the last commit, but I missed it.)
Need to tell the geometry objects that they are being output for the
first time, so that they can provide all their information the first
time, and then just reference themselves on subsequent outputs (during
the output of the same file).

26 lines of code changed in 4 files:

dav 2006-04-18 17:55 Rev.: 33903


These are fixes for correctly handling Uintah Geometry Objects.
However, there was a lot of clean up necessary in this effort so those
files are also included.

GeometryPieces are now stored in Handles so that we don't have to
explicitly delete them. Therefore many delete's have been removed,
and most "GeometryPiece *"s have been replaced with "GeometryPieceP"s.

ShellGeometryPieces aren't 100% yet, but they will be soon. (I don't
think anyone is actually using them.)

Instead of having the names of the GeometryPieces just used as strings
in the Factory file, I've placed the name in the .cc file of each
GeometryPiece. It can be referenced by using <TheClass>::TYPE_NAME or
theObject->getType();

The GeometryPiece::setName() function now sets a flag that specifies
that the name has been set. This is necessary so that when the piece
is output to a file, it will display the piece's name. Therefor the
setName() function is not used inside any of the GeometryPiece
classes.

The outputProblemSpec() function will now label the objects in
addition to outputing them. It will also only output a reference to
them on 2nd and subsequent references. It has been moved into the
GeometryPiece() file and uses outputHelper() from each subclass to
output the subclasses data.

OutputProblemSpec() and clone() are now const functions. Note,
however, that outputProblemSpec() does modify the firstOutput_
variable. (It is 'mutable'.)

M Core/Exceptions/AssertionFailed.h

Turn off SGI STL warnings.

M Core/Geometry/Point.h
M Core/Geometry/Vector.cc
M Core/Geometry/Vector.h
M Core/Geometry/Point.cc

Use x_ (etc) instead of _x. This matches our standard, avoids
potential conflicts with compilers use of _<something> variables, and
cleans up a bunch of strangely formatted warning messages on the newer
gcc's.

M Packages/Uintah/CCA/Components/Models/test/Mixing.cc
M Packages/Uintah/CCA/Components/Models/test/Mixing.h

GeometryPiece fixes. Cleaned up compiler warnings.

M Packages/Uintah/CCA/Components/Models/test/PassiveScalar.cc
M Packages/Uintah/CCA/Components/Models/test/PassiveScalar.h
M Packages/Uintah/CCA/Components/Models/test/flameSheet_rxn.cc
M Packages/Uintah/CCA/Components/Models/test/flameSheet_rxn.h
M Packages/Uintah/CCA/Components/Models/test/AdiabaticTable.cc
M Packages/Uintah/CCA/Components/Models/test/AdiabaticTable.h
M Packages/Uintah/CCA/Components/Models/test/SimpleRxn.cc
M Packages/Uintah/CCA/Components/Models/test/SimpleRxn.h

GeometryPiece fixes. Compiler warning cleanup. Untabify, indention,
etc. Initialize possibly uninitialized variables.

M Packages/Uintah/CCA/Components/Models/test/NonAdiabaticTable.cc
M Packages/Uintah/CCA/Components/Models/test/NonAdiabaticTable.h
M Packages/Uintah/CCA/Components/Models/Radiation/RadiationDriver.cc
M Packages/Uintah/CCA/Components/Models/Radiation/RadiationDriver.h
M Packages/Uintah/CCA/Components/MPM/ConstitutiveModel/MPMMaterial.cc
M Packages/Uintah/CCA/Components/MPM/ConstitutiveModel/MPMMaterial.h
M Packages/Uintah/CCA/Components/MPM/Contact/SpecifiedBodyContact.cc
M Packages/Uintah/CCA/Components/MPM/ParticleCreator/ShellParticleCreator.cc
M Packages/Uintah/CCA/Components/MPM/ParticleCreator/ParticleCreator.cc
M Packages/Uintah/CCA/Components/MPM/ParticleCreator/ParticleCreator.h
M Packages/Uintah/CCA/Components/MPM/ParticleCreator/MembraneParticleCreator.cc
M Packages/Uintah/CCA/Components/ICE/ICEMaterial.cc
M Packages/Uintah/CCA/Components/Arches/BoundaryCondition.cc
M Packages/Uintah/CCA/Components/Arches/ScaleSimilarityModel.cc
M Packages/Uintah/CCA/Components/Arches/BoundaryCondition.h
M Packages/Uintah/CCA/Components/Examples/RegionDB.h
M Packages/Uintah/CCA/Components/Examples/BoundaryConditions.cc
M Packages/Uintah/CCA/Components/Examples/BoundaryConditions.h
M Packages/Uintah/CCA/Components/Examples/RegionDB.cc
M Packages/Uintah/StandAlone/inputs/SMPMICE/test_guv.ups
M Packages/Uintah/StandAlone/inputs/MPMICE/mpmice.srn
M Packages/Uintah/StandAlone/inputs/MPMICE/diw.ups
M Packages/Uintah/StandAlone/slb.cc
M Packages/Uintah/Core/GeometryPiece/NullGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/NaaBoxGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/SmoothCylGeomPiece.cc
M Packages/Uintah/Core/GeometryPiece/SmoothCylGeomPiece.h
M Packages/Uintah/Core/GeometryPiece/ConeGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/CorrugEdgeGeomPiece.h
M Packages/Uintah/Core/GeometryPiece/GUVSphereShellPiece.h
M Packages/Uintah/Core/GeometryPiece/SphereGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/UnionGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/BoxGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/DifferenceGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/SphereMembraneGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/TriGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/SphereMembraneGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/GeometryObject.h
M Packages/Uintah/Core/GeometryPiece/SphereShellPiece.cc
M Packages/Uintah/Core/GeometryPiece/ShellGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/NaaBoxGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/IntersectionGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/ShellGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/GeometryPieceFactory.h
M Packages/Uintah/Core/GeometryPiece/CylinderGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/PlaneShellPiece.cc
M Packages/Uintah/Core/GeometryPiece/CylinderGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/NullGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/PlaneShellPiece.h
M Packages/Uintah/Core/GeometryPiece/GeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/FileGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/GeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/FileGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/CorrugEdgeGeomPiece.cc
M Packages/Uintah/Core/GeometryPiece/GUVSphereShellPiece.cc
M Packages/Uintah/Core/GeometryPiece/CylinderShellPiece.cc
M Packages/Uintah/Core/GeometryPiece/ConeGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/SphereGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/CylinderShellPiece.h
M Packages/Uintah/Core/GeometryPiece/BoxGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/ShellGeometryFactory.cc
M Packages/Uintah/Core/GeometryPiece/DifferenceGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/UnionGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/ShellGeometryFactory.h
M Packages/Uintah/Core/GeometryPiece/TriGeometryPiece.h
M Packages/Uintah/Core/GeometryPiece/GeometryObject.cc
M Packages/Uintah/Core/GeometryPiece/SphereShellPiece.h
M Packages/Uintah/Core/GeometryPiece/SmoothGeomPiece.cc
M Packages/Uintah/Core/GeometryPiece/UniformGrid.h
M Packages/Uintah/Core/GeometryPiece/IntersectionGeometryPiece.cc
M Packages/Uintah/Core/GeometryPiece/SmoothGeomPiece.h
M Packages/Uintah/Core/Grid/Grid.h
M Packages/Uintah/Core/Grid/BoundaryConditions/BoundCondReader.cc
M Packages/Uintah/Core/Grid/BoundaryConditions/RectangleBCData.cc
M Packages/Uintah/Core/Grid/BoundaryConditions/BCDataArray.cc
M Packages/Uintah/Core/ProblemSpec/ProblemSpec.h
M Packages/Uintah/Core/Util/Handle.h
M Packages/Uintah/Core/Util/RefCounted.cc
M Packages/Uintah/Core/Util/RefCounted.h

M Packages/Uintah/CCA/Components/ProblemSpecification/ProblemSpecReader.cc

Don't use single letter variable names if they are going to be used
outside of a small loop. Fixed compiler warning.

M Packages/Uintah/Core/GeometryPiece/GeometryPieceFactory.cc

Massive changes. Removed hardcoding of object type names. Storing a
map of GeometryPiece Handles instead of pointers (to solve memory
issues (ie: freeing of pointers twice). Handle the case when an xml
element has data in it, but no children. Added more debug output.

M Packages/Uintah/Core/Grid/Grid.h
M Packages/Uintah/Core/Util/RefCounted.h

Copy constructor was never actually implemented (or used).


1507 lines of code changed in 138 files:

callahan 2006-04-18 16:13 Rev.: 33896

Partial undo of mask nrrd to volume rendering checkin.

14 lines of code changed in 4 files:

callahan 2006-04-18 15:00 Rev.: 33895

Fix search grid construction for degenerate grids.

51 lines of code changed in 2 files:

worthen 2006-04-18 13:32 Rev.: 33894

Turn off Petsc throwing up a debugger window

1 lines of code changed in 1 file:

borodai 2006-04-17 19:41 Rev.: 33893

Spherical harmonics radiation model and weighted sum of grey gases property
model for radiation do not pass 0th order verification. They do not run
in parallel (they crash). Thus, they have been disabled.
Patchmean property model option runs, but shows difference between 1 and 8 processor
run after 2.5 sec. on 10^3 case, so users are warned. In contrast, discrete
ordinats with radcoef (default options, only ones left) results compare
just fine for 10 seconds in this case.

14 lines of code changed in 3 files:

allen 2006-04-17 18:09 Rev.: 33892

add new conglomerate module directory, module for arbitrarily slicing a field, and the package manager support

1867 lines of code changed in 11 files:

allen 2006-04-17 18:07 Rev.: 33891

clean up of modules to use new module methods for ports and cleaned up Isosurface GUI

144 lines of code changed in 7 files:

callahan 2006-04-17 16:05 Rev.: 33890

Preliminary addition of a mask to the volume rendering pipeline.

110 lines of code changed in 7 files:

mdavis 2006-04-17 15:31 Rev.: 33888

Fix invalid geometry specifier error when loading networks originally saved on larger screens

4 lines of code changed in 1 file:

harman 2006-04-17 15:18 Rev.: 33887

added patch and level information to the influx/outflux warnings

10 lines of code changed in 2 files:

mdavis 2006-04-17 15:02 Rev.: 33886

Fix loading networks after clearing canvas. Check for existance of module icon before continuing with drawPorts

1 lines of code changed in 1 file:

callahan 2006-04-17 14:01 Rev.: 33885

Fix get_random_point use of seeds, reseeding RNG for each sample results in a degenerate sampling pattern.

60 lines of code changed in 15 files:

callahan 2006-04-17 14:01 Rev.: 33884

Fix compiler warning

4 lines of code changed in 1 file:

callahan 2006-04-17 13:23 Rev.: 33883

Add get_random_point for HexVol and StructHexVol mesh types. Also fix the random distribution in TetVolMesh. Add regression networks for these types.

655 lines of code changed in 9 files:

borodai 2006-04-17 12:58 Rev.: 33882

As it stands now, computeCO2_H2_from_f is a duplicate
parameter, completely opposite to useTableValues. So,
computeCO2_H2_from_f was removed to awoid confusion and
example input files has been changed accordingly.

12 lines of code changed in 2 files:

worthen 2006-04-17 11:33 Rev.: 33881

For mem use: always print 2 decimal places with MB, and also truncate elapsed time, mean, and stdev to 2 decimal places

11 lines of code changed in 1 file:

borodai 2006-04-17 10:49 Rev.: 33880

Well, afte removing bracket, puting O back is needed.

1 lines of code changed in 1 file:

callahan 2006-04-17 10:43 Rev.: 33879

Add get_random_point functions to most meshes. Also fix a bug in StructQuadSurfMesh::get_size() function, it was computing size incorrectly for asymetric quads. Add regression/example networks for testing get_random_point functions.

886 lines of code changed in 18 files:

harman 2006-04-17 09:32 Rev.: 33878

Changed chmod and chgrp statements so they don't complain about not having an argument.

0 lines of code changed in 2 files:

jeroen 2006-04-16 22:44 Rev.: 33877

Adding an example to demonstrate matlab engine's capabilities. I still need to figure out how to remove the absolute paths in the files and how to make scirun use relative paths (relative to the net itself).

2886 lines of code changed in 25 files:

jeroen 2006-04-15 23:26

bug fixes

1043 lines of code changed in 29 files:

jfsheph 2006-04-15 16:34 Rev.: 33874

adding an updated weblink for more information on MESQUITE

0 lines of code changed in 2 files:

jfsheph 2006-04-15 16:33 Rev.: 33873

adding an example net for using CAMAL (similar to the one Marty added for the new TetGen module...

387 lines of code changed in 1 file:

jeroen 2006-04-15 13:01

bug fixes

22 lines of code changed in 3 files:

mjc 2006-04-15 10:31 Rev.: 33870

fix configure test for mesquite, needs two dirs for its include path

213 lines of code changed in 3 files:

jeroen 2006-04-14 22:37

bug fixes

127 lines of code changed in 8 files:

mjc 2006-04-14 14:57 Rev.: 33867

fix node indexing bug in swap_shared_edge

1 lines of code changed in 1 file:

jeroen 2006-04-14 13:53

bug fix

2 lines of code changed in 2 files:

harman 2006-04-14 13:32 Rev.: 33864

turned off some debugging code that was accidentally left on.

1 lines of code changed in 1 file:

borodai 2006-04-14 12:03 Rev.: 33863

Removed erroneous bracket.

1 lines of code changed in 1 file:

jeroen 2006-04-14 09:52 Rev.: 33862

Part 1 of CardioWave interface

2238 lines of code changed in 38 files:

jeroen 2006-04-14 09:47 Rev.: 33861

Bug fixes

11 lines of code changed in 4 files:

sachse 2006-04-13 19:49 Rev.: 33860

Module HeuristicStreamLines III

854 lines of code changed in 3 files:

sachse 2006-04-13 19:48 Rev.: 33859

Module HeuristicStreamlines II

116 lines of code changed in 1 file:

sachse 2006-04-13 19:47 Rev.: 33858

Module HeuristicStreamLines I

165 lines of code changed in 2 files:

ayla 2006-04-13 14:23 Rev.: 33857

Remove unnecessary Dataflow library from PSELIBS.

0 lines of code changed in 2 files:

mjc 2006-04-13 13:41 Rev.: 33856

fix runaway removal

8 lines of code changed in 1 file:

mjc 2006-04-13 13:40 Rev.: 33855

fix half edge bug in orient faces

2 lines of code changed in 1 file:

guilkey 2006-04-13 13:29 Rev.: 33854

Adding Dyna's soil and foam model (material 5).

789 lines of code changed in 4 files:

dav 2006-04-13 13:18 Rev.: 33853

Cleaned up compiler warnings. Removed Dataflow dependency from sub.mk.

21 lines of code changed in 2 files:

jeroen 2006-04-13 11:52 Rev.: 33852

Old include files are removed. They did not nee to be here

0 lines of code changed in 1 file:

dgroulx 2006-04-12 17:15 Rev.: 33851

Undoing changes to DataArchier that were unintenionally committed.

1 lines of code changed in 1 file:

dgroulx 2006-04-12 16:42 Rev.: 33850

Added the teem_defs.h header to a few files that checked for HAVE_TEEM.

4 lines of code changed in 2 files:

dav 2006-04-12 16:15 Rev.: 33849

Have to #include teem_defs if you want HAVE_TEEM to be useful.

8 lines of code changed in 1 file:

dgroulx 2006-04-12 14:58 Rev.: 33848

Cleaned up some of the Teem optional fixes

0 lines of code changed in 1 file:

dgroulx 2006-04-12 14:40 Rev.: 33847

Removed sus dependencies on teem.

59 lines of code changed in 4 files:

mjc 2006-04-12 11:42 Rev.: 33843

add command line option for removing connected to face or node

24 lines of code changed in 1 file:

mjc 2006-04-12 11:41 Rev.: 33842

make the node index available to function

4 lines of code changed in 5 files:

jeroen 2006-04-12 11:22 Rev.: 33840

Somehow this module got broken in the last series of updates........

1 lines of code changed in 1 file:

jeroen 2006-04-12 11:20 Rev.: 33839

bug fixes for the case when the name of the field is fac and not face. This will no longer result in an internal error of the matlab engine.

0 lines of code changed in 6 files:

darbyb 2006-04-12 08:19 Rev.: 33834

Fix default value for Choose modules.

27 lines of code changed in 1 file:

dav 2006-04-11 18:09 Rev.: 33831

Added a debug stream and made error output msgs a little more useful.

10 lines of code changed in 1 file:

jeroen 2006-04-11 16:51 Rev.: 33829

oops did not add directory

1438 lines of code changed in 5 files:

harman 2006-04-11 16:36 Rev.: 33827

added bulletproofing for null labels
-only create a new file if the patch contains that cell

24 lines of code changed in 1 file:

jeroen 2006-04-11 14:36 Rev.: 33826

Moving FE code from my package to core so I can share it with Frank for the BioPSE development. We will be optimizing this code further

1 lines of code changed in 1 file:

ayla 2006-04-11 13:55 Rev.: 33825

Merge branch babel_v0_11x to trunk.

9468 lines of code changed in 151 files:

worthen 2006-04-11 13:18 Rev.: 33824

Last month's worth of windows fixes

106 lines of code changed in 34 files:

mjc 2006-04-11 09:58 Rev.: 33823

basic meshing fixes

7 lines of code changed in 4 files:

jeroen 2006-04-11 09:33

Updates to various modules

87 lines of code changed in 22 files:

dav 2006-04-10 17:08 Rev.: 33819

M CCA/Components/SimulationController/SimulationController.cc

Output the memory usage in human readable units. Bryan/David, please
verify that I did this correctly and that it doesn't mess up any tools
we have.

M Core/GeometryPiece/NaaBoxGeometryPiece.h

Update the way the NaaBox is created... use a transform to a unit cube
instead of using the code I originally had. The reason for this is
that the code I used originally was 'transposing' the shape. This way
is cleaner and easier to understand.

M Core/GeometryPiece/sub.mk

Cleaned up.

M Core/GeometryPiece/GeometryPieceFactory.h
M Core/GeometryPiece/GeometryPieceFactory.cc

Store the geometry pieces that are created so that they can be
referred to just by name. This is going to cause some input files to
break!... because now you can't specify the geometry of a piece twice
(if you give it a name)... If you want to refer a previous piece, you
need to do so only by name. I've tested this, but if anyone runs into
any problems, please let me know and I will look into them. If anyone
has any other comments, feel free to let me know.

Note, this is not thread safe... which I don't think is a problem, but
if it is, we will need to fix it.

Use:
<geom_object>
<parallelepiped label = "slide2">
<p1> [2.0, 4.0, 1.0] </p1>
<p2> [2.0, 4.0, 2.5] </p2>
<p3> [4.5, 2.0, 1.0] </p3>
<p4> [3.0, 4.5, 1.0] </p4>
</parallelepiped>
</geom_object>

and then later:

<geom_object>
<parallelepiped label = "slide2" />
</geom_object>

(BTW, this will (should) work across components.)

M Core/GeometryPiece/NaaBoxGeometryPiece.cc

- Set the GeometryPiece name default to "unamed".
- Change method of checking "inside" to using a transform to a unit
cube.


169 lines of code changed in 7 files:

harman 2006-04-10 13:48 Rev.: 33818

removed FirstOrderCE and SecondOrderCE

10 lines of code changed in 10 files:

dav 2006-04-10 11:36 Rev.: 33816

Packages/rtrt/StandAlone/tex-utils/pnn-vq.cc

Must use "Cluster" (the class), not "cluster" the object to access
static member. Meant to check this in on the previous commit, but
somehow I missed it. -Dav

0 lines of code changed in 2 files:

dav 2006-04-10 11:30 Rev.: 33815

Dataflow/Modules/Render/Painter.h
Dataflow/Modules/Render/Painter.cc

Fixed compiler warnings.

Dataflow/Modules/String/SprintfMatrix.cc
Packages/BioPSE/Dataflow/Modules/Forward/ApplyFEMVoltageSource.cc
Packages/BioPSE/Dataflow/Modules/Forward/EITAnalyticSolution.cc
Packages/BioPSE/Dataflow/Modules/Inverse/Tikhonov.cc
Packages/BioPSE/Dataflow/Modules/Inverse/DipoleSearch.cc

Initialized variables that could be used uninitialized. (Not sure if
these are the right defaults, but at least they will be consistent.)


Packages/BioPSE/Dataflow/Modules/Forward/SetupBEMatrix.cc

Changed 'filed' to 'field'... I think it was a typo.

Packages/rtrt/Core/SketchMaterial.h
Packages/rtrt/StandAlone/scenes/sub.mk

SketchMaterial no longer compiles with the newest Teem. It was
originally created by James Bigler to work around thread safety/memory
issues in Teem. He used internal Teem functions/variables to make
things work. With the updates to Teem, the SketchMaterial will
probably need to be completely rewritten. It is only used in one
scene right now, so I am turning it off. (Note, there are a few #if
0's in the SketchMaterial.h file right now as I was trying to get it
to compile, but it doesn't make sense to turn everything off and leave
the file, so I'm removing it from the sub.mk.

Packages/rtrt/StandAlone/tex-utils/pnn-vq.cc

Fixed (strict) compilation error. (Must use the Class, not an
instance of the Class.)

Packages/rtrt/StandAlone/tex-utils/pca-error.cc

Use the new Teem '_nva' version of the function.

31 lines of code changed in 16 files:

mjc 2006-04-10 09:01 Rev.: 33814

additional basic modeling functionality for hand editing trisurfs

267 lines of code changed in 7 files:

jeroen 2006-04-09 21:46 Rev.: 33813

In order for a proper rendering of bilinear or trilinear data, one would need the higher order basis function implementation with a division of the element in more than 1 segment, hence modifying when pure linear visualization is done vs. when we need to approximate it

1 lines of code changed in 1 file:

jeroen 2006-04-09 21:42 Rev.: 33812

Updates needed to generate phase map visualizations

328 lines of code changed in 13 files:

dav 2006-04-09 16:52 Rev.: 33811

Fix for (I think) 64 bit compilation. Bryan will need to verify that this is ok.

7 lines of code changed in 1 file:

jeroen 2006-04-08 16:00 Rev.: 33810

update to most recent version

4257 lines of code changed in 80 files:

jeroen 2006-04-08 15:53 Rev.: 33809

update to most recent version

4880 lines of code changed in 67 files:

callahan 2006-04-07 18:29 Rev.: 33808

Add QuadSurfMesh SampleField regression test.

177 lines of code changed in 1 file:

callahan 2006-04-07 18:28 Rev.: 33807

Use search grid in QuadSurfMesh for locates. Also implement get_random_point.

134 lines of code changed in 1 file:

callahan 2006-04-07 18:27 Rev.: 33806

Minor cleanups

5 lines of code changed in 1 file:

callahan 2006-04-07 16:05 Rev.: 33804

Add a Mesh get_delems wrapper for getting the derivative elements from an element.

63 lines of code changed in 9 files:

callahan 2006-04-07 15:46 Rev.: 33803

Fix inefficient inside4_p test used to determine if a point is inside a quad.

8 lines of code changed in 1 file:

callahan 2006-04-07 15:15 Rev.: 33802

Change find_closest_face to the more general find_closest_elem

12 lines of code changed in 5 files:

callahan 2006-04-07 15:02 Rev.: 33801

Add a DElem typedef to the mesh classes, the derivative of Elem.

14 lines of code changed in 11 files:

mdavis 2006-04-06 16:10 Rev.: 33798

Make transfer funciton cutting plane widget smaller

0 lines of code changed in 2 files:

callahan 2006-04-06 16:09 Rev.: 33797

Squish execute functions

143 lines of code changed in 1 file:

mdavis 2006-04-06 16:08 Rev.: 33796

Fail if Insight Toolkit is required but not found

1 lines of code changed in 1 file:

allen 2006-04-06 14:02 Rev.: 33794

minor fixes for OS X compile

6 lines of code changed in 4 files:

callahan 2006-04-06 13:59 Rev.: 33793

Add laplacian/shape regression networks

780 lines of code changed in 3 files:

callahan 2006-04-06 13:54 Rev.: 33792

Test laplacian

0 lines of code changed in 1 file:

callahan 2006-04-06 13:49 Rev.: 33791

Squish shape_improvement_wrapper

186 lines of code changed in 1 file:

callahan 2006-04-06 12:57 Rev.: 33790

Squish smart_laplacian_smoother

133 lines of code changed in 1 file:

jas 2006-04-06 12:29 Rev.: 33789

Fill in correct data for outputProblemSpec.

7 lines of code changed in 1 file:

worthen 2006-04-06 11:48 Rev.: 33788

Fix MPI MPMICE corner cases

15 lines of code changed in 3 files:

worthen 2006-04-05 23:31 Rev.: 33787

Fix (well, maybe a temp fix) for an overlapping node problem, and remove some excess output

26 lines of code changed in 3 files:

kuzimmer 2006-04-05 18:30 Rev.: 33786

Make sure that downstream modules see a 'new' colormap after scaling.

0 lines of code changed in 2 files:

jfsheph 2006-04-05 17:00 Rev.: 33785

adding some progress reporting and an initial GUI

267 lines of code changed in 6 files:

callahan 2006-04-05 16:22 Rev.: 33784

Fix all crash bug instances of nrrdAxisInfoSize change.

2 lines of code changed in 3 files:

worthen 2006-04-05 16:07 Rev.: 33783

Whoops - missed a file

26 lines of code changed in 1 file:

worthen 2006-04-05 15:15 Rev.: 33782

Get MPI MPMICE to work (as far as I can tell), and a few small TG performance improvements

166 lines of code changed in 13 files:

jfsheph 2006-04-05 13:31 Rev.: 33781

adding test modules for MeshSmoothing, MeshQuality, and IsoClip-hex modules

546 lines of code changed in 3 files:

guilkey 2006-04-05 12:39 Rev.: 33778

One small formatting change to test committing from the ME network for John.

1 lines of code changed in 1 file:

dav 2006-04-05 09:29 Rev.: 33776

Initialized some variables with default values (not sure if they are right, but at least they will now be consistent). Fixed uda2nrrd problem for 64 bit machines.

15 lines of code changed in 4 files:

dav 2006-04-05 09:26 Rev.: 33775

Fixed --with-mpi tests to look for lib64 (if it exists). This allows configure to pass on 64 bit linuxes that use a lib64 instead of just a lib.

94 lines of code changed in 2 files:

dmw 2006-04-04 23:06 Rev.: 33774

nrrd -> nrrd_

0 lines of code changed in 2 files:

guilkey 2006-04-04 18:44 Rev.: 33773

Put an allocateAndPut in place for pTempPrevious in SerialMPM::refine.

2 lines of code changed in 1 file:

mdavis 2006-04-04 16:23 Rev.: 33772

changed NrrdData->nrrd to NrrdData->nrrd_

53 lines of code changed in 9 files:

allen 2006-04-04 15:56 Rev.: 33771

changed NrrdData-> to NrrdData->nrrd_ and cleaned up everything associated with it

89 lines of code changed in 1 file:

allen 2006-04-04 15:28 Rev.: 33770

changed NrrdData-> to NrrdData->nrrd_ and cleaned up everything associated with it

0 lines of code changed in 2 files:

allen 2006-04-04 15:12 Rev.: 33768

changed NrrdData-> to NrrdData->nrrd_ and cleaned up everything associated with it

1305 lines of code changed in 131 files:

callahan 2006-04-04 15:12 Rev.: 33767

Use scirun ASSERT

8 lines of code changed in 4 files:

callahan 2006-04-04 15:06 Rev.: 33766

minor cleanups, fix white space

8 lines of code changed in 4 files:

mdavis 2006-04-04 15:05 Rev.: 33765

Fix volume rendering crash caused by int->size_t type change in nrrd size field

1 lines of code changed in 1 file:

jfsheph 2006-04-04 13:45 Rev.: 33762

Adding some initial work on a module for inserting a new layer of hexes into an existing hex mesh. This is an ongoing effort, but I wanted to have a restore point before moving onto the next phase of the development.

2668 lines of code changed in 8 files:

jfsheph 2006-04-04 13:09 Rev.: 33761

adding LOCATE_E to mesh synchronization

2 lines of code changed in 1 file:

callahan 2006-04-04 12:50 Rev.: 33760

Synchronize LOCATE_E on TriSurfMesh types for new find_closest_face implementation.

4 lines of code changed in 1 file:

callahan 2006-04-04 11:33 Rev.: 33759

Minor cleanups, add whitespace, indent, remove commented out code, turn comments into proper sentences.

29 lines of code changed in 1 file:

callahan 2006-04-04 11:05 Rev.: 33758

Minor cleanups, add whitespace, indent, remove commented out code, turn comments into proper sentences.

263 lines of code changed in 3 files:

mjc 2006-04-04 09:48 Rev.: 33757

64bit compile fixes with the new Teem version

28 lines of code changed in 6 files:

harman 2006-04-04 08:44 Rev.: 33756

update to the "new" table format.

3 lines of code changed in 1 file:

darbyb 2006-04-03 18:57 Rev.: 33754

Upgrading to Teem 1.9. Main changes include API changes for var-arg functions and more careful use of unsigned types. See http://sourceforge.net/project/shownotes.php?release_id=380683&group_id=85445 for more information.

881 lines of code changed in 74 files:

callahan 2006-04-03 17:31 Rev.: 33753

Move MeshSmoother to FieldsGeometry category.

10 lines of code changed in 3 files:

callahan 2006-04-03 17:30 Rev.: 33752

Fixes for 64 bit compile

7 lines of code changed in 1 file:

callahan 2006-04-03 17:12 Rev.: 33751

Fix compilation error.

2 lines of code changed in 1 file:

jeroen 2006-04-03 16:57 Rev.: 33750

The topology did not calculate right, hence finite elements were not computed correctly

5 lines of code changed in 1 file:

mjc 2006-04-03 16:28 Rev.: 33749

Initial commit of TetGen module and test network that shows how to create a segmented tet vol from 3 surfaces

1005 lines of code changed in 6 files:

mjc 2006-04-03 16:27 Rev.: 33748

return true only if a valid handle is in the dynamic input port

31 lines of code changed in 3 files:

worthen 2006-04-03 14:38 Rev.: 33747

Fix Particle copyData (don't use extra cells as a judge for needing to refine)

10 lines of code changed in 1 file:

guilkey 2006-04-03 14:36 Rev.: 33746

ConstitutiveModel.cc - formatting only
SerialMPM.cc - In SerialMPM::refine, added:
mpm_matl->getConstitutiveModel()->initializeCMData(patch, mpm_matl,new_dw);
and got rid of explicit allocates for stress and deformation.
The new command takes care of those, as well as particular variables
needed by specific constitutive models.

Also, got rid of SerialMPM::setParticleDefaultWithTemp in .cc/.h files
as it isn't used.

15 lines of code changed in 3 files:

allen 2006-04-03 14:27 Rev.: 33745

switched ChooseNrrd to use the template ChooseModule

0 lines of code changed in 4 files:

allen 2006-04-03 13:02 Rev.: 33744

moved get_names into the parent class and added flexibilty to pass property name

11 lines of code changed in 3 files:

dav 2006-04-03 12:06 Rev.: 33743

A GeometryPiece/NaaBoxGeometryPiece.h
A GeometryPiece/NaaBoxGeometryPiece.cc

Added "Non-access-aligned" (Naa) Geometry box. It is specified using
four points. Make sure to look in the .h file for the layout of the
points. In the .ups file, specify a box like this:

<parallelepiped label = "cube">
<p1> [1.0, 1.0, 1.0] </p1>
<p2> [1.0, 1.5, 1.0] </p2>
<p3> [1.5, 1.0, 1.0] </p3>
<p4> [1.0, 1.0, 1.5] </p4>
</parallelepiped>

M GeometryPiece/sub.mk

Added NaaBoxGeometryPiece and -lm for linking.

M GeometryPiece/BoxGeometryPiece.h
M GeometryPiece/BoxGeometryPiece.cc

A few basic cleanups.

M GeometryPiece/GeometryPieceFactory.cc

Added 'parallelepiped' geometry piece check.


292 lines of code changed in 6 files:

zgao 2006-04-02 23:58 Rev.: 33739

make standalone compare_mms correct by using coordinates; get parameters from uda; calculate global L2_norm

108 lines of code changed in 1 file:

guilkey 2006-04-01 10:44 Rev.: 33734

Comment out some confusing logic about doing scheduleErrorEstimate
for ICELevels, for now, do this for all levels. Also, do this task
for all materials, not just ICE matls.

8 lines of code changed in 1 file:

March 2006 »

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