September 2006 Commit Log

Number of Commits:
116
Number of Active Developers:
14
luitjens 2006-09-29 15:20 Rev.: 35468

Fixed the regridding critera when using max_timestep_interval > 1 so it will be consistent between restarts

1 lines of code changed in 1 file:

harman 2006-09-29 13:07 Rev.: 35465

User can initialize the passive scalar to have a sinusoidal distribution.
Useful in testing AMR, coarse fine interface operators.

<geom_object>
<box label="scalarPlug"> </box>
<scalar> 0 </scalar>
<sinusoidalIntialize> true </sinusoidalIntialize>
<freq> [1,0,0] </freq>
</geom_object>

49 lines of code changed in 2 files:

harman 2006-09-29 09:17 Rev.: 35462

fixed yesterday's bulletproofing commit.
throw exception if ( spacing > (upper - lower) )

3 lines of code changed in 1 file:

harman 2006-09-29 09:02 Rev.: 35460

destroy totalMassBurnedLabel and totalHeatReleasedLabel

0 lines of code changed in 6 files:

harman 2006-09-28 15:49 Rev.: 35456

Use old-style quadradic CFI interpolator. New-style isn't quite ready.

3 lines of code changed in 1 file:

harman 2006-09-28 13:24 Rev.: 35454

Incorporation of Colella's quadratic CFI interpolator into AMRICE
AMR.h
-------------------------
-added select_CFI_interpolator()
quadradicInterpolation_CF()
- made gridHi inclusive

AMRICE.h
------------------------
added global variable d_orderOf_CFI_Interpolation. The order of interpolation
at the CFI can be different than the rest of the domain.

refine_CF_interfaceOperator()
variable names: finePatch instead of patch
now using select_CFI_Interpolator()

AMRICE.cc
----------------------
default value of d_orderOf_CFI_Interpolation = d_orderOfInterpolation
can be specified in ups file

78 lines of code changed in 3 files:

harman 2006-09-28 13:12 Rev.: 35453

getCoarseFineFaceRange()
for higer order interpolation increase the coarse level foot print by the order
of the interpolation. Need this for Colella's quadradic CFI interpolator.

9 lines of code changed in 1 file:

harman 2006-09-28 10:15 Rev.: 35452

eliminated warning
WARNING: Unknown Geometry Piece Type ( density, scalar, temperature)


0 lines of code changed in 2 files:

harman 2006-09-28 08:50 Rev.: 35451

linearInterpolation()
- cleanup and fixed x+,y+,z+ face bug that was probably introduced by
recent commit.

32 lines of code changed in 1 file:

worthen 2006-09-27 23:52 Rev.: 35450

Fix hopefully last of 3d amr bugs

3 lines of code changed in 1 file:

harman 2006-09-27 16:36 Rev.: 35449

problemSetup()
-more bulletproofing

12 lines of code changed in 1 file:

harman 2006-09-27 16:25 Rev.: 35448

cleaned up output

4 lines of code changed in 6 files:

borodai 2006-09-27 15:37 Rev.: 35447

old code cleanup

0 lines of code changed in 10 files:

harman 2006-09-27 14:43 Rev.: 35446

ooops

1 lines of code changed in 1 file:

harman 2006-09-27 14:41 Rev.: 35445

turned off iteratorTests

10 lines of code changed in 1 file:

borodai 2006-09-27 14:40 Rev.: 35444

Consolidated outlet and pressure BC subroutines for scalar

27 lines of code changed in 5 files:

borodai 2006-09-27 14:17 Rev.: 35442

Consolidated subroutines for pressure and outlet BC.

131 lines of code changed in 3 files:

bigler 2006-09-27 14:17 Rev.: 35441

Fixed hard coded /usr/X11R6/lib paths to use BASE_LIB_PATH (helps with 64 bit systems with /usr/X11R6/lib64). It all seems to work properly.

210 lines of code changed in 2 files:

harman 2006-09-27 14:03 Rev.: 35440

AMR.cc
__________________________________
normalizedDistance_CC()
- the normalized distance can now be either + or - depending
on the relative distance from the CC. This is a big change.
AMR.h
__________________________________
global: general cleanup
testInterpolators()
- generalized to handle either the entire domain or just a CFI

70 lines of code changed in 2 files:

harman 2006-09-27 13:22 Rev.: 35438

added bulletproofing to problemsetup.
if (lower>=upper) barf

15 lines of code changed in 1 file:

borodai 2006-09-27 11:46 Rev.: 35437

Removed remnants of broken multiple scalar implementation.

68 lines of code changed in 22 files:

allen 2006-09-27 11:28 Rev.: 35436

cleaned up module to reflect the proper datatype

0 lines of code changed in 4 files:

harman 2006-09-27 11:04 Rev.: 35435

added bulletproofing. LaticeRefinementRatio and refinement ratio must be >= 1

12 lines of code changed in 1 file:

harman 2006-09-27 08:45 Rev.: 35434

quadratic_CFI interpolator
- Now gives the right answers if refined in only 1 direction. Not working if
refined in more than one direction

37 lines of code changed in 1 file:

bigler 2006-09-27 00:35 Rev.: 35433


Core/HVolumeVG.h
Core/HVolumeVGspecific.cc

GCC 4.1 seems to be a bit more picky about template specialization.
This checking fixes this. You declare the specialized function in
the header and then make sure the function implementations are
inside the appropriate namespace.

0 lines of code changed in 4 files:

bigler 2006-09-27 00:33 Rev.: 35432


Point.h
Vector.h

Dav missed some friend functions that needed to be defined outside
of declaring them friend functions. Most notably the Pio,
Interpolate, and stream operator functions.

0 lines of code changed in 4 files:

borodai 2006-09-26 13:36 Rev.: 35428

Clean up. Set cesav, etc. directly to 0 here if ae is 0.

94 lines of code changed in 10 files:

harman 2006-09-26 12:36 Rev.: 35424

AMR.h
__________________________________
- progress on colella's quadratic_CFI interpolator. Works in 3D but gives the wrong answers

testInterpolators()
- extended to work on at the CFI and with the quadratic_CFI interpolator.

AMRICE.cc
__________________________________
refineCoarseFineInterface()
- added CFI interpolator test
- rename patch -> finePatch and level->fineLevel


164 lines of code changed in 2 files:

guilkey 2006-09-22 16:59 Rev.: 35412

Moved d_with_ice to the MPMFlags.

21 lines of code changed in 9 files:

guilkey 2006-09-22 16:43 Rev.: 35411

Basic image parsing and particle creation, all in one step. Courtesy of
Steve Maas of bioengineering.

395 lines of code changed in 2 files:

worthen 2006-09-22 16:29 Rev.: 35410

Fix MultiTaskgraphing bug where the DataArchiver would output the delt BEFORE its reduction, resulting in bad restarts

0 lines of code changed in 2 files:

guilkey 2006-09-22 14:25 Rev.: 35408

Get both of these working with the composite contact model, which basically
meant using the if(d_matls.requested(m)) conditional in a bunch of places
in which it was left out. In addition, cleaned up quite a bit, hopefully
made them more readable.

0 lines of code changed in 4 files:

worthen 2006-09-21 15:56 Rev.: 35401

Remove runtime warning (in DataArchive),
Display grid on restart if AMR debugstream is on,
Add some padding to refinementRatio so it doesn't round down (and throw an exception if a bad one is added)

17 lines of code changed in 4 files:

borodai 2006-09-21 14:33 Rev.: 35400

Remvoed bcenthalpy. it was the same as bcscalar.

81 lines of code changed in 12 files:

xiongcw 2006-09-21 13:04 Rev.: 35397

new non-ideal gas EOS added for exploding container simulations

235 lines of code changed in 4 files:

borodai 2006-09-21 12:46 Rev.: 35396

Got rid of one apcal. Now use same one for both velocity and scalar.

55 lines of code changed in 17 files:

harman 2006-09-21 05:35 Rev.: 35395

quadraticInterpolator_CFI()
- progress toward generalizing it in 3 dimensions.

44 lines of code changed in 1 file:

borodai 2006-09-20 16:45 Rev.: 35394

removed unused logicals, cleaned up a bit.

2 lines of code changed in 3 files:

harman 2006-09-20 15:15 Rev.: 35390

AMR.h
Birth of a new coarse fine interface quadratic interpolator, based on Chombo/Colella.
Barely works on x+,x- faces, significant thrashing/changes ahead.

AMR.cc
Pulled a weed

196 lines of code changed in 2 files:

luitjens 2006-09-20 14:25 Rev.: 35388

Fixed a icpc 9.1 compiler error.

0 lines of code changed in 2 files:

luitjens 2006-09-20 14:16 Rev.: 35387

Changed float to double. Floating point error was causing the dynamic
load balancer to assign patches to non-existant processors. This only
occured when there were lots of patches.

11 lines of code changed in 2 files:

harman 2006-09-20 13:33 Rev.: 35383

compiler warning

0 lines of code changed in 1 file:

harman 2006-09-20 10:51 Rev.: 35376

compiler warnings

1 lines of code changed in 4 files:

worthen 2006-09-19 14:40 Rev.: 35372

Force time-refinement to be based on cell refinement. This is probably temporary until we get the arbitrary-timestep per level working.

Also provides a "lockstep" knob for AMR that will in essence force TRR To be 1

Most of the changes are just moving adjustDelt from SimulationState back to Level.

127 lines of code changed in 39 files:

luitjens 2006-09-19 10:43 Rev.: 35371

The mean is now calculated as the exponential moving average. Around 86% of
the weight occurs within the AVERAGE_WINDOW defined at the top of
SimulationContrller.cc.

The standard deviation has been removed because it no longer relates to
the mean.

27 lines of code changed in 3 files:

harman 2006-09-18 15:03 Rev.: 35369

debugging output fix

1 lines of code changed in 1 file:

luitjens 2006-09-18 10:33 Rev.: 35366

Removed spew

0 lines of code changed in 1 file:

worthen 2006-09-16 16:45 Rev.: 35364

Have scrub decrementer not do select-patches when there are no ghost cells (mirror what the TG does)

1 lines of code changed in 1 file:

harman 2006-09-15 17:10 Rev.: 35363

last commit had debugging output turned on.

4 lines of code changed in 2 files:

harman 2006-09-15 17:05 Rev.: 35362

Added macros that limit the amount of debugging output in the refluxing routines.
Limits the output based on face and variable name.

99 lines of code changed in 3 files:

worthen 2006-09-15 11:29 Rev.: 35357

Improve the relationship between Load Balancing, Scrubbing, Multi-Taskgraphing, and refluxing
- Provide a Conditional message-send, which enables the TG to only compile once instead
of twice for a load-balance (and allows multi-tg to run following a lb)
- Have the LB threshold be based on the theoretical loadBalance%
- Deprecate nonCopyDataVars

143 lines of code changed in 18 files:

guilkey 2006-09-14 17:36 Rev.: 35355

No longer create an instance of MPMFlags for each material. Not sure
why this was ever done, but it was causing problems. Now, pass flags into
the constructor for MPMMaterial from SerialMPM, or whichever MPM you are
using.

11 lines of code changed in 9 files:

borodai 2006-09-14 14:51 Rev.: 35352

Discretization cleanup. Forgot to add this file to previous commit.

3 lines of code changed in 1 file:

borodai 2006-09-14 14:26 Rev.: 35350

Long overdue discretization cleanup

63 lines of code changed in 12 files:

borodai 2006-09-14 13:44 Rev.: 35348

Added extra projection option, mostly for debugging.
Changed all solver tolerances to be absolute.

244 lines of code changed in 27 files:

dav 2006-09-14 13:24 Rev.: 35347

Fixed typo... added '>' to end of #include line.

0 lines of code changed in 2 files:

worthen 2006-09-14 12:46 Rev.: 35346

define MSG_NOSIGNAL for AIX

6 lines of code changed in 1 file:

worthen 2006-09-14 11:28 Rev.: 35344

Fix scrubbing for refluxed vars

22 lines of code changed in 1 file:

borodai 2006-09-14 11:22 Rev.: 35343

clean up before adding nonuniform grid support

0 lines of code changed in 1 file:

guilkey 2006-09-14 11:14 Rev.: 35342

Ease requirement to save p.x if any other particle data is saved to also
allow p.xx to fill this requirement.

1 lines of code changed in 1 file:

borodai 2006-09-14 11:02 Rev.: 35341

removed remnants of old code

1 lines of code changed in 2 files:

allen 2006-09-13 17:01 Rev.: 35336

fixed data crash and cleanup indenting

0 lines of code changed in 2 files:

harman 2006-09-13 16:44 Rev.: 35335

refluxOperator_computeCorrectionFluxes():
- no longer dividing the refluxing correction by mass or mass * cv.
(Basically, a code cleanup that should have happened a while ago)

19 lines of code changed in 4 files:

ayla 2006-09-13 16:20 Rev.: 35334

Metacomponent model dtd change.

5 lines of code changed in 9 files:

allen 2006-09-13 16:19 Rev.: 35333

changed to use base element and added checks for element type

0 lines of code changed in 6 files:

ayla 2006-09-13 15:59 Rev.: 35332

Remove test executable.

0 lines of code changed in 1 file:

ayla 2006-09-13 15:09 Rev.: 35331

Remove accidental addition of test components.

1 lines of code changed in 1 file:

ayla 2006-09-13 14:52 Rev.: 35330

Change SCIRun to Framework.

8 lines of code changed in 1 file:

ayla 2006-09-13 14:41 Rev.: 35329

Change SCIRun to Framework.

1 lines of code changed in 1 file:

ayla 2006-09-13 14:35 Rev.: 35328

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

65 lines of code changed in 44 files:

ayla 2006-09-13 14:27

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

45 lines of code changed in 57 files:

ayla 2006-09-13 14:22

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

82 lines of code changed in 95 files:

ayla 2006-09-13 14:16

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

11 lines of code changed in 44 files:

worthen 2006-09-13 14:15 Rev.: 35319

AMR Scrubbing

343 lines of code changed in 15 files:

ayla 2006-09-13 14:10

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

156 lines of code changed in 111 files:

ayla 2006-09-13 13:46 Rev.: 35314

Change SCIRun to Framework to solve name conflict between SCIRun dir and scirun program on case-insensitive file systems.

409 lines of code changed in 249 files:

harman 2006-09-13 13:42 Rev.: 35313

small tweaks so refluxing of transported variables works again.

5 lines of code changed in 3 files:

harman 2006-09-13 12:48 Rev.: 35312

ICE:registerAMR_refluxingVariable -- added bulletproofing

PassiveScalar:
- you must registerAMR_refluxingVariables before the transported variables.

17 lines of code changed in 2 files:

luitjens 2006-09-13 10:52 Rev.: 35306

Removed erroneous cerrLock.unlock() this elimintates the warning message

Mutex::~Mutex: Warning: Mutex "cerr lock" currently locked.

2 lines of code changed in 2 files:

ashwinds 2006-09-12 16:53 Rev.: 35303

Modifications to EventService prototype

0 lines of code changed in 14 files:

worthen 2006-09-12 15:34 Rev.: 35301

Remove some debug output

0 lines of code changed in 2 files:

luitjens 2006-09-12 15:33 Rev.: 35300

Added the ability to specify a max_wall_time in the Time section. This
parameter is specified in seconds, omitting it or setting it to 0 will
cause it to be infinite.

5 lines of code changed in 5 files:

luitjens 2006-09-12 15:25 Rev.: 35299

Fixed a bug with the tags

4 lines of code changed in 1 file:

luitjens 2006-09-12 11:27 Rev.: 35295

Changed tag allocation to only allocate tags when needed. This prevents
excess memory usage with newer versions of MPI that allow many more tags
than older versions.

53 lines of code changed in 5 files:

dav 2006-09-11 16:42 Rev.: 35287


M configure
M configure.ac

- Differentiate between darwin powerpc and intel processors (for thirdparty).
- Sync a could of changes with CIBC configure:
- Export ITCL_LIB_DIR
- Fix indentation

M include/sci_defs/environment_testdefs.h.in

Indent for readability.

M Core/Datatypes/Mesh.h

Fix compiler warning.

38 lines of code changed in 6 files:

allen 2006-09-11 16:05 Rev.: 35285

fixed topology check and indenting

0 lines of code changed in 4 files:

allen 2006-09-11 16:03 Rev.: 35284

add insigh libs and cleanup indenting

0 lines of code changed in 4 files:

allen 2006-09-11 15:55 Rev.: 35283

the usual checkin - lots of changes to my sandbox

15 lines of code changed in 1 file:

allen 2006-09-11 15:53 Rev.: 35281

added strdup and minor clean up

0 lines of code changed in 2 files:

allen 2006-09-11 15:52 Rev.: 35280

clean up of strdup and removed duplicate code

21 lines of code changed in 3 files:

allen 2006-09-11 15:50 Rev.: 35279

the usual checkin - lots of changes to my sandbox

1682 lines of code changed in 1 file:

allen 2006-09-11 15:49 Rev.: 35278

added strdup and minor clean upPackages/Fusion/Dataflow/Modules/Fields/VULCANConverter.cc

0 lines of code changed in 4 files:

worthen 2006-09-11 13:19 Rev.: 35277

overwrite bad checkin

161 lines of code changed in 1 file:

worthen 2006-09-11 13:18 Rev.: 35276

override input.xml for reduce-uda instead of throw exception (and fix warning)

165 lines of code changed in 1 file:

worthen 2006-09-11 13:08 Rev.: 35274

Turn warning into an exception

2 lines of code changed in 1 file:

worthen 2006-09-11 12:59

MPI fixes to Uda reducer

32 lines of code changed in 4 files:

worthen 2006-09-11 10:59 Rev.: 35267

Subcycle and coarsen only if doing AMR

13 lines of code changed in 1 file:

worthen 2006-09-08 15:19 Rev.: 35256

Fixes for uda reducer

32 lines of code changed in 2 files:

harman 2006-09-07 17:18 Rev.: 35237

Added -svnDiff option

This runs svn diff <src/.....Packages/Uintah> and writes to your output
file.

-------------------------------------
Dav suggested this method of getting the SCIRun srcdir. However, he
mentioned that when/if Uintah is separated from SCIRun, this fix might
stop working. Another possible solution is to:

#define SCI_OK_TO_INCLUDE_SCI_ENVIRONMNET_DEFS_H
#include <sci_defs/environmnet_defs.h>

and then just use the #defined SCIRUN_SRCDIR directly in the code. It
is likely that if Uintah and SCIRun are separated, and/or we start to
use CMAKE, that a new method will have to be found to do this.

16 lines of code changed in 1 file:

callahan 2006-09-07 16:18 Rev.: 35236

Prettier MeshSmoother GUI (from cicb branch).

0 lines of code changed in 2 files:

ayla 2006-09-07 14:29

Updates to Kepler and Ptolemy packages.

22 lines of code changed in 4 files:

ayla 2006-09-07 14:28 Rev.: 35230

Updates to Kepler and Ptolemy packages. Minor configure option documentation change for SCIRun2.

53 lines of code changed in 4 files:

worthen 2006-09-07 13:01 Rev.: 35229

reduce-uda amr fix

5 lines of code changed in 1 file:

harman 2006-09-07 11:28 Rev.: 35228

added:
"-reduce_uda : Reads <uda-dir>/input.xml file and removes unwanted labels (see FAQ).\n";

2 lines of code changed in 1 file:

luitjens 2006-09-07 11:23 Rev.: 35227

Changed the memory reporting from resident memory to total memory.

2 lines of code changed in 1 file:

worthen 2006-09-07 11:13 Rev.: 35226

Add unix commands for date and hostname

9 lines of code changed in 1 file:

allen 2006-09-07 10:45 Rev.: 35225

Clean up of gui and added centering selection

0 lines of code changed in 6 files:

harman 2006-09-07 10:29 Rev.: 35223

Dump out the date and hostname cerr. Useful to help decide what to keep when
cleaning out old udas. This assumes that the commands "date" and "hostname" exists.

22 lines of code changed in 1 file:

ayla 2006-09-06 18:16 Rev.: 35220

Migrate kepler server to Kepler package

34 lines of code changed in 3 files:

ayla 2006-09-06 17:59 Rev.: 35219

Migrate kepler server to Kepler package

1046 lines of code changed in 15 files:

jfsheph 2006-09-06 15:16 Rev.: 35215

adding a normal Laplacian smoother to the list of smoothers in the MeshSmoother module. This smoother should run about an order of magnitude faster than the other smoothers in the module, but doesn't have the same quality guarantees supplied by the other ones. However, it's a pretty standard smoother with which most people are already familiar.

85 lines of code changed in 3 files:

borodai 2006-09-06 11:13 Rev.: 35208

Fixed adiabatic case

2 lines of code changed in 1 file:

harman 2006-09-05 16:44 Rev.: 35202

so it will compile with gcc 4.0

2 lines of code changed in 1 file:

worthen 2006-09-05 14:15 Rev.: 35201

fix Reflux iterators when coarse/fine patches share boundary (forgot this file)

31 lines of code changed in 1 file:

worthen 2006-09-05 14:10 Rev.: 35200

Get neighborhood to (hopefully) be correct for large 3D 4+level problems. Also prune down calls to selectPatches when there are no ghost cells, and change the reflux iterators when the coarse and fine patches share the same boundary

46 lines of code changed in 5 files:

kuzimmer 2006-09-01 09:03 Rev.: 35195

Allow periodic boundary conditions for face centered variables

115 lines of code changed in 3 files:

August 2006 »

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