February 2014 Commit Log

Number of Commits:
48
Number of Active Developers:
6
tsaad 2014-02-28 18:47 Rev.: 51578

disable memory check on the coal-boiler-test until I fix the bug. Thanks to Todd for helping to narrow this down. Also, Jeremy wrote a great python script that we should all use.

1 lines of code changed in 1 file:

tsaad 2014-02-27 20:29 Rev.: 51577

remove a dynamic cast of solverparameters in Wasatch thanks to John's recent commit.

1 lines of code changed in 1 file:

harman 2014-02-27 17:47 Rev.: 51576

Added input file and regression test.
Simulation of a water plug oscillating back and forth in a closed box. An ideal
gas is on either side of the plug. Initially, the left side has a higer pressure.

67 lines of code changed in 2 files:

jas 2014-02-27 17:09 Rev.: 51575

Implement setting/retrieving setupFrequency using the solver parameters.

14 lines of code changed in 2 files:

ahumphrey 2014-02-26 13:15 Rev.: 51572

Finish some straggler copyright/license updates. (2013 --> 2014).
Found while working in md-dev branch.

33 lines of code changed in 40 files:

tsaad 2014-02-26 11:36 Rev.: 51570

Simplify the specifiicaiton of strong/weak forms of scalar transport equations. update all input files. add checkpoints to coal-boiler test.

4 lines of code changed in 1 file:

tsaad 2014-02-26 09:01 Rev.: 51567

add the mini coal boiler to the Wasatch RT. This is a milestone for Wasatch!

2 lines of code changed in 1 file:

ahumphrey 2014-02-24 22:06 Rev.: 51565

Fix dependency generation issue for IBM XL compilers. Generate new configure script.
The old line: CC_DEPEND_REGEN='-MF $(dir $@)depend.mk' worked only because xlc++ ignores everything after -M and the -qmakedep option is functionally identical to the -M option. Interesting...
-MF was an attempt perhaps at Fortran dep-gen, and got left in configure.ac

Dav - This should clear this issue up for you.

4 lines of code changed in 2 files:

harman 2014-02-24 09:59 Rev.: 51563

- cleaned up formatting for SCI_DEBUG ComponentTimes
- multiply LIB by 100.

4 lines of code changed in 1 file:

harman 2014-02-24 08:58 Rev.: 51562

added executable permission.

0 lines of code changed in 2 files:

tsaad 2014-02-22 10:54 Rev.: 51561

update pressure coefficient matrix inside/near intrusions that intersect with domain boundaries.

14 lines of code changed in 3 files:

tsaad 2014-02-21 20:20 Rev.: 51560

set proper intrusion values in extra cells. This approach will reduce the number of if statements in other loops (e.g. coef matrix) that require knowledge of the intrusion. This is an important step to handle intrusions that intersect with domain boundaries.

31 lines of code changed in 3 files:

tsaad 2014-02-21 17:08 Rev.: 51559

Rename timestep to dt since this is used to refer to the timestep size. add timestep (the timestep counter here) information to the SetCurrentTime expression.

46 lines of code changed in 17 files:

tsaad 2014-02-21 16:43 Rev.: 51558

use IJK indexing when modifying the pressure coefficient matrix for intrusions. This is more readable.

15 lines of code changed in 1 file:

tsaad 2014-02-21 15:08 Rev.: 51557

cleanup some comments leftover from my previous commit.

4 lines of code changed in 1 file:

tsaad 2014-02-21 15:03 Rev.: 51556

untangle the volume fraction and the matrix setup from the pressure::evaluate() method. This makes things more robust, cleaner, and fixes issues with intrusions that intersect with domain boundaries.

57 lines of code changed in 3 files:

harman 2014-02-21 14:48 Rev.: 51555

added bulletproofing to catch if a python script is not executable.

4 lines of code changed in 1 file:

harman 2014-02-21 14:16 Rev.: 51554

2nd attempt, set executable permissions

1 lines of code changed in 1 file:

harman 2014-02-21 14:10 Rev.: 51553

changed permissions so script is executable

1 lines of code changed in 1 file:

tsaad 2014-02-21 13:49 Rev.: 51552

add a method to the HypreSolver2Parameters to set the setupFrequency. This will allow the component to control that frequency instead of the user. We should eventually rip it out from the solver-input spec.

54 lines of code changed in 3 files:

tsaad 2014-02-21 13:49 Rev.: 51551

remove un-necessary boundary conditions (Neumann on velocity/momentum) that is being applied on the velocity/momentum normal to Outflow/Open boundaries

11 lines of code changed in 1 file:

jsutherland 2014-02-13 17:16 Rev.: 51550

oops - I jumped the gun. These aren't quite ready apparently...

3 lines of code changed in 1 file:

jsutherland 2014-02-13 17:08 Rev.: 51549

- Activate a few more GPU tests
- fix some comments on an input file.

3 lines of code changed in 1 file:

harman 2014-02-13 10:21 Rev.: 51548

getFilenamesBySuffix()
fixed one minor memory leak

5 lines of code changed in 2 files:

jsutherland 2014-02-13 08:47 Rev.: 51547

Disable one of the tests that was crashing the GPU on aurora and prism.

1 lines of code changed in 1 file:

jsutherland 2014-02-12 18:04 Rev.: 51546

Add GPU tests for Wasatch. This will grow over the next few weeks/months.

10 lines of code changed in 1 file:

ahumphrey 2014-02-12 14:54 Rev.: 51545

Some cleanup and fixes on existing GPU-enabled components and GPU-related APIs.

93 lines of code changed in 7 files:

jsutherland 2014-02-12 12:21 Rev.: 51544

Fix a sign error. Fortunately, this wasn't being used in any production calculations - only in testing.

1 lines of code changed in 1 file:

harman 2014-02-11 18:08 Rev.: 51543

fixed memory corruption issue.
remove stale comments

7 lines of code changed in 1 file:

harman 2014-02-11 10:59 Rev.: 51542

- Removed global variables that weren't being used and being deleted in the destructor
- added stub functions
- fixed typo

8 lines of code changed in 2 files:

harman 2014-02-10 15:41 Rev.: 51541

DataArchiver.cc
- reduceUdaSetup()
set d_outputInitTimestep = true;

DataArchive.cc/.h
- changed createdVarLabels_ -> d_createdVarLabels

- added method reduceUda_ReadUda(). This is a specialization of restartInitialize()
and is used by reduceUda to read variables from the uda and put them into the
DW.

UdaReducer.cc/h
- more descriptive task name computeLabels -> readDataArchive.

* Now works on bigger udas and a smaller number of procs.

133 lines of code changed in 5 files:

jas 2014-02-07 17:51 Rev.: 51540

Change error to warning if can't use the -fopenmp.

3 lines of code changed in 2 files:

jas 2014-02-07 17:38 Rev.: 51539

Add -fopenmp flag to CXXFLAGS and CFLAGS if possible.

54 lines of code changed in 2 files:

qymeng 2014-02-07 17:21 Rev.: 51538

better scheduling copydata timestep

32 lines of code changed in 1 file:

qymeng 2014-02-07 16:07 Rev.: 51537

parallelly compute refineset

32 lines of code changed in 1 file:

harman 2014-02-07 15:40 Rev.: 51536

Removed the raid test, that never quite worked.

Now looping over all the *.xml in chunks of 100 files. You need to
use smaller chunks to avoid csh system limitations. This issue
occurs on bigger runs with 1000's of xml files.

0 lines of code changed in 2 files:

tsaad 2014-02-07 12:11 Rev.: 51535

silence hundreds of warnings.

1 lines of code changed in 1 file:

harman 2014-02-07 11:34 Rev.: 51534


Removed the local labels pVelGradLabel & pVelGradLabel_preReloc.


10 lines of code changed in 1 file:

harman 2014-02-06 17:08 Rev.: 51533

removed redundant computes(pVelGradLabel...) It's scheduled in MPM::scheduleInitialize()

0 lines of code changed in 1 file:

harman 2014-02-06 15:11 Rev.: 51532

Dust of this constitutive model, so it will at least run.

0 lines of code changed in 2 files:

jsutherland 2014-02-06 13:35 Rev.: 51531

Commit on behalf of Abhishek. This activates GPU support for convective flux limiters in Wasatch.

45 lines of code changed in 3 files:

harman 2014-02-06 11:09 Rev.: 51530

DataArchiver.cc
reduceUdaSetup()
- use Dir::copy() instead of copyFile(). On large machines (mira)
only a subset of system calls are available. The work around is to use Dir::copy()
and enable boost.

UdaReducer.cc
- added addtional user warning about configuring with boost.


8 lines of code changed in 2 files:

harman 2014-02-05 16:38 Rev.: 51529

Dir::copy(DIR)
- ignore copying files that already exist in the new directory.

- removed stray cout.

21 lines of code changed in 1 file:

harman 2014-02-05 12:45 Rev.: 51528

reduceUda:
- only copy checkpoint directories if they exist.
- added warning. Only only 1 core is used
during the copy and it could be really slow on big checkpoint directories.

11 lines of code changed in 2 files:

tsaad 2014-02-04 16:51 Rev.: 51527

fix a bug that was causing restarts to fail on RK2 and RK3 problems with momentum-related boundary conditions.

2 lines of code changed in 1 file:

tsaad 2014-02-04 14:32 Rev.: 51525

more nomenclature changes to the variable density expressions

25 lines of code changed in 6 files:

tsaad 2014-02-03 14:18 Rev.: 51524

Fix a bad little bug when applying Neumann BCs on the pressure. Reorder some parsing of the varden MMS and fix some input files.

112 lines of code changed in 6 files:

tsaad 2014-02-03 10:53 Rev.: 51522

change variable density nomenclature on predictors from var_* to var*, var_rhs_* to var*_rhs etc… This will break all varden RT due to varlabel name changes - uda directories can't be compared.

102 lines of code changed in 6 files:

January 2014 »

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