Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


V. Natarajan, Y. Wang, P.-T. Bremer, V. Pascucci, B. Hamann. “Segmenting Molecular Surfaces,” In Computer Aided Geometric Design, Special Issue on Applications of Geometric Modeling in the Life Sciences, Vol. 23, No. 6, Note: (To appear), pp. 495--509. 2006.


P.-T. Bremer, V. Pascucci, B. Hamann. “Maximizing Adaptivity in Hierarchical Topological Models,” In International Conference on Shape Modeling and Applications 2005, IEEE, 2005.
DOI: 10.1109/smi.2005.28

A. Gyulassy, V. Natarajan, V. Pascucci, P.-T. Bremer, B. Hamann. “Topology-based Simplification for Feature Extraction from 3D Scalar Fields,” In Proceedings of the IEEE Conference on Visualization (VIS-05), pp. 275--280. October, 2005.


P.-T. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci. “A Topological Hierarchy for Functions on Triangulated Surfaces,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 10, No. 4, Note: UCRL-JRNL-208700, pp. 385-396. July/August, 2004.

P.-T. Bremer, V. Pascucci, B. Hamann. “Maximizing adaptivity in hierarchical topological models,” In Trends in Software, Note: UCRL-BOOK-200013, Edited by T. Moeller and B. Hamann and B. Russell, Springer, pp. 121--130. January, 2004.


P.-T. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci. “A Multi-resolution Data Structure for Two-dimensional Morse Functions,” In Proceedings of IEEE Conference on Visualization (VIS-03), Note: UCRL-JC-154014, pp. 139--146. October, 2003.