Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

1997


 A.L. Levy, T.J. Schaewe, M.I. Miller, K.R. Smith, A.M. Hammoud, J.M. Henderson, S. Joshi, K.E. Mark, C.D. Sturm, L.L. McDurmont Jr, R. Bucholz. “An Internet-Connected, Patient-Specific, Deformable Brain Atlas Integrated into a Surgical Navigation System,” In J Digit Imaging, Vol. 10, No. 3 (Suppl. 1), pp. 231--237. August, 1997.


M. Miller, A. Banerjee, G. Christensen, S. Joshi, N. Khaneja, U. Grenander, L. Matejic. “Statistical Methods in Computational Anatomy,” In Stat Methods Med Res, Vol. 6, No. 3, pp. 267--299. September, 1997.


M.I. Miller, S. Joshi. “Discussion of Mathematics for Object Recognition Shape, Invariance and Deformations,” In Proceedings of the Workshop on Mathematics for Object Recognition Shape, Invariance and Deformations, Edited by L. Younes, November, 1997.

1995


 A. Banerjee, G.E. Christensen, J. Haller, S. Joshi, M.E. Raichle, M.I. Miller. “Accommodating anatomical variability in functional imaging via deformable templates,” In Proc. 33rd Annual Allerton Conference on Communication, Control and Computing, pp. 275--284. 1995.


J.W. Haller, M.I. Miller, G.E. Christensen, S. Joshi, M. Gado, J. Csernansky, M.W. Vannier. “A Comparison of Automated and Manual Segmentation of Hippocampus MR Images,” In Proceedings of SPIE Medical Imaging, pp. 206--215. March, 1995.


J.W. Haller, G.E. Christensen, S. Joshi, M.I. Miller, M.W. Vannier. “Digital Atlas-Based Segmentation of the Hippocampus,” In Computer Assisted Radiology: Proceedings of the International Symposium on Computer and Communications Systems for Image Guided Diagnosis and Therapy, Edited by C.C. Jaffe and H.U. Lemke and K. Inamura and M.W. Vannier, pp. 152--157. June, 1995.

1994


 M.I. Miller, S. Joshi, D.R. Maffitt, J.G. McNally, U. Grenander. “Membranes, Mitochondria and Amoebae: Shape Models,” In Journal of Applied Statistics, Vol. 21, No. 1, 2, Edited by Kanti Mardia, pp. 141--163. 1994.

1993


 S. Joshi, M. Miller. “Maximum a Posteriori Estimation with Good's Roughness for Three-Dimensional Optical-Sectioning Microscopy,” In J Opt Soc Am A, Vol. 10, No. 5, pp. 1078--1085. May, 1993.