Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


 P. Koshevoy, T. Tasdizen, R.T. Whitaker, B. Jones, R. Marc. “Assembly of Large Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy,” In Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, October, 2006.


O. Nemitz, M. Rumpf, T. Tasdizen, R.T. Whitaker. “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” In Journal of Mathematical Imaging and Vision, Vol. 27, No. 3, pp. 217--229. April, 2006.

2005


 S.P. Awate, T. Tasdizen, R.T. Whitaker. “Nonparametric Statistics of Image Neighborhoods for Unsupervised Texture Segmentation,” SCI Institute Technical Report, No. UUSCI-2005-003, University of Utah, 2005.


L. Grady, T. Tasdizen. “A Geometric Multigrid Approach to Solving the 2D Inhomogeneous Laplace Equation with Internal Dirichlet Boundary Conditions,” In IEEE International Conference on Image Processing, Vol. 2, pp. 642--645. September, 2005.


J.M. Kniss, R. Van Uitert, A.J. Stephens, G. Li, T. Tasdizen. “Statistically Quantitative Volume Visualization,” In IEEE Visualization 2005, 2005.


T. Tasdizen, S.P. Awate, R.T. Whitaker, N. Foster. “MRI Tissue Classification with Neighborhood Statistics: A Nonparametric, Entropy-Minimizing Approach,” In Proceedings of The 8th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 517--525. 2005.
PubMed ID: 16685999


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Enhancement of Cell Boundaries in Transmission Micropscopy Images,” In IEEE International Conference on Image Processing, Vol. 2, pp. 129--132. 2005.


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images,” SCI Institute Technical Report, No. UUSCI-2005-008, University of Utah, 2005.


T. Tasdizen, R.T. Whitaker, R. Marc, B. Jones. “Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images,” SCI Institute Technical Report, No. UUSCI-2005-007, University of Utah, 2005.

2004


 G. Kindlmann, A. L. Alexander, M. Lazar, J. Lee, T. Tasdizen, R.T. Whitaker. “An Algorithm for Moment-Based Global Registration of Echo Planar Diffusion-Weighted Images,” In Proceedings of 12th Annual ISMRM, pp. 2200. 2004.


T. Tasdizen, D.M. Weinstein, J.N. Lee. “Automatic Tissue Classification for the Human Head from Multispectral MRI,” SCI Institute Technical Report, No. UUSCI-2004-001, University of Utah, March, 2004.


T. Tasdizen, R.T. Whitaker. “Higher-order nonlinear priors for surface reconstruction,” In IEEE Trans. Pattern Anal. & Mach. Intel., Vol. 26, No. 7, pp. 878--891. July, 2004.


T. Tasdizen, R.T. Whitaker. “An Efficient, Geometric Multigrid Solver for the Anisotropic Diffusion Equation in Two and Three Dimensions,” SCI Institute Technical Report, No. UUSCI-2004-002, University of Utah, June, 2004.

2003


 G. Kindlmann, R.T. Whitaker, T. Tasdizen, T. Möller. “Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications,” In Proceedings Visualization 2003, pp. 67. October, 2003.


S. Premoze, T. Tasdizen, J. Bigler, A.E. Lefohn, R. T. Whitaker. “Particle-Based Simulation of Fluids,” In Eurographics, pp. 401--410. 2003.


T. Tasdizen, R.T. Whitaker, P. Burchard, S. Osher. “Geometric Surface Processing via Normal Maps,” In ACM Transactions on Graphics, 2003.


T. Tasdizen, R.T. Whitaker. “Cramer-Rao Bounds for Nonparametric Surface Reconstruction from Range Data,” In Proceedings of Fourth International Conference on 3-D Imaging and Modeling, pp. 70--77. October, 2003.


T. Tasdizen, R.T. Whitaker. “Anisotropic diffusion of surface normals for feature preserving surface reconstruction,” In Proceedings of Fourth International Conferenceon 3-D Imaging and Modeling, pp. 353--360. October, 2003.


T. Tasdizen, R.T. Whitaker. “Feature preserving variational smoothing of terrain data,” In IEEE Workshop on Variational, Geometric and Level Set Methods in Computer Vision, October, 2003.

2002


 T. Tasdizen, R.T. Whitaker, P. Burchard, S. Osher. “Geometric Surface Smoothing via Anisotropic Diffusion of Normals,” In Proceeding of IEEE Visualization 2002, pp. 125--132. 2002.