Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2000


 Y. Livnat, S.G. Parker, C.R. Johnson. “Fast Isosurface Extraction Methods for Large Image Data Sets,” In Handbook of Medical Imaging, Edited by A.N. Bankman, Academic Press, San Diego, CA pp. 731--745. Nov, 2000.

1999


 C.R. Johnson, S.G. Parker, C.D. Hansen, G.L. Kindlmann, Y. Livnat. “Interactive Simulation and Visualization,” In IEEE Computer, Vol. 32, No. 12, pp. 59--65. Dec, 1999.


Y. Livnat. “NOISE, WISE and SAGE: Algorithms for Rapid Isosurface Extraction,” SCI Institute Technical Report, No. UUSCI-1999-001, University of Utah, December, 1999.


S.G. Parker, M. Parker, Y. Livnat, P.P. Sloan, C.D. Hansen, P. Shirley. “Interactive Ray Tracing for Volume Visualization,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 5, No. 3, pp. 238--250. July-September, 1999.


S.G. Parker, P. Shirley, Y. Livnat, C.D. Hansen, P.-P. Sloan, M. Parker. “Interacting with Gigabyte Volume Datasets on the Origin 2000,” In The 41st Annual Cray User's Group Conference, 1999.

1998


 Y. Livnat, C.D. Hansen. “View Dependent Isosurface Extraction,” In IEEE Visualization '98, pp. 175--180. Oct, 1998.


S.G. Parker, P. Shirley, Y. Livnat, C.D. Hansen, P.-P. Sloan. “Interactive Ray Tracing for Isosurface Extraction,” In IEEE Visualization '98, pp. 233--238. October, 1998.

1997


 C.R. Johnson, D.M. Beazley, Y. Livnat, S.G. Parker, J.A. Schmidt, H.W. Shen, D.M. Weinstein. “Applications of Large-Scale Computing and Scientific Visualization in Medicine,” SCI Institute Technical Report, No. UUSCI-1997-001, University of Utah, 1997.


F. Yu, Y. Livnat, C.R. Johnson. “An Automatic Adaptive Refinement and Derefinement Method for 3D Elliptic Problems,” In Applied Numerical Mathematics, 1997.

1996


 C.R. Johnson, D.M. Beazley, Y. Livnat, S.G. Parker, J.A. Schmidt, H.W. Shen, D.M. Weinstein. “Applications of Large-Scale Computing and Scientific Visualization in Medicine,” In International Journal on Supercomputer Applications and High Performance Computing, 1996.


Y. Livnat, H.W. Shen, C.R. Johnson. “A Near Optimal Isosurface Extraction Algorithm Using the Span Space,” In IEEE Transactions on Visual Computer Graphics, Vol. 2, No. 1, pp. 73--84. 1996.


J. Painter, H.P. Bunge, Y. Livnat. “Case Study: Mantle Convection Visualization on the Cray T3D,” In IEEE Visualization `96, pp. 409--412. 1996.


H.W. Shen, C.D. Hansen, Y. Livnat, C.R. Johnson. “Isosurfacing in Span Space with Utmost Efficiency,” In IEEE Visualization `96, IEEE Press, pp. 287--294. 1996.