Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


P.P. Sloan, C.D. Hansen. “Parallel Lumigraph Reconstruction,” In Parallel Visualization and Graphics Symposium 1999, pp. 7--14. October, 1999.

P. Sutton, C.D. Hansen. “Isosurface Extraction in Time-varying Fields Using a Temporal Branch-on-Need Tree (T-BON),” In IEEE Visualization 1999, pp. 147--153. Oct, 1999.

T. Tasdizen, J.-P. Tarel, D. B. Cooper. “Algebraic curves that work better,” In Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 1999.
DOI: 10.1109/cvpr.1999.784605

A. Tomlin, S. Ghorai, G. Hart, M. Berzins. “3D adaptive unstructured meshes for air pollution modelling,” In Environmental Management and Health, Vol. 10, No. 4, pp. 267-275. 1999.
DOI: 10.1108/09566169910276238

T. Udeshi, C.D. Hansen. “Towards Interactive Photo-Realistic Rendering of Indoor Scenes: A Hybrid Approach,” In Proceedings of the Tenth Eurographics Workshop on Rendering, pp. 63--76. June, 1999.

T. Udeshi, C.D. Hansen. “Parallel Multipipe Rendering for Very Large Isosurface Visualization,” In Joint EUROGRAPHICS - IEEE TCCG Symposium on Visualization, 1999.

B. Walter, G. Drettakis, S.G. Parker. “Interactive Rendering Using the Render Cache,” In Rendering techniques '99 (Proceedings of the10thEurographics Workshop on Rendering), Vol. 10, Springer-Verlag/Wien, New York pp. 235--246. 1999.

M. Walkley, M. Berzins. “A finite element model for the one-dimensional extended Boussinesq equations,” In International Journal for Numerical Methods in Fluids, Vol. 29, pp. 143--157. 1999.

J.A. Weiss, L.E. Paulos. “Mechanical Testing of Ligament Fixation Devices,” In Techniques in Orthopaedics, Vol. 14, No. 1, pp. 14--21. 1999.

D.M. Weinstein, G. Kindlmann, E. Lundberg. “Tensorlines: Advection-Diffusion Based Propagation Through Diffusion Tensor Fields,” In IEEE Visualization, pp. 249--253. 1999.

D.M. Weinstein, L. Zhukov, C.R. Johnson. “Lead Field Basis for FEM Source Localization,” School of Computing Technical Report, No. UUCS-99-014, University of Utah, Salt Lake City, UT October, 1999.

D.M. Weinstein, G. Kindlmann, E. Lundberg. “Stream Bundles - Cohesive Advection through Flow Fields,” University of Utah Technical Report, No. UUCS-99-005, School of Computing, 1999.

L. Zhukov, D.M. Weinstein, C.R. Johnson. “Independent Component Analysis For EEG Source Localization In Realistic Head Models,” In Third International Conference on Inverse Problems in Engineering, 1999.


O. Alter, Y. Yamamoto. “Impossibility of Determining the Unknown Wavefunction of a Single Quantum System: Quantum Non-Demolition Measurements, Measurements without Entanglement and Adiabatic Measurements,” In Fortschritte der Physik, Vol. 46, No. 6-8, pp. 817--827. November, 1998.

C.L. Bajaj, V. Pascucci, R.J. Holt, A.N. Netravali. “Dynamic Maintenance and Visualization of Molecular Surfaces,” In Proceedings of the 10th Canadian Conference on Computational Geometry (CCCG), Montreal, Quebec, Canada, Edited by Mike Soss, School of Computer Science, McGill University, pp. 68--69. August, 1998.

C.L. Bajaj, V. Pascucci, G. Rabbiolo, D.R. Schikore. “Hypervolume Visualization: A Challenge in Simplicity,” In Proceedings of the 1998 IEEE Symposium on Volume Visualization, pp. 95--102. 1998.

C.L. Bajaj, V. Pascucci, D.R. Schikore. “Visualization of Scalar Topology for Structural Enhancement,” In Proceedings of the 9th Annual IEEE Conference on Visualization (VIS-98), IEEE Computer Society, New York pp. 51--58. October, 1998.
ISBN: 1-58113-106-2

M. Berzins, P.J. Capon, P.K. Jimack. “On Spatial Adaptivity and Interpolation When Using the Method of Lines,” In Applied Numerical Mathematics, Vol. 26, pp. 117--134. 1998.

M. Berzins. “A Solution-Based Triangular and Tetrahedral Mesh Quality Indicator,” In SIAM Journal on Scientific Computing, Vol. 19, pp. 2051--2060. 1998.

M. Berzins, R. Fairlie, S.V. Pennington, J.M. Ware, L.E. Scales. “SPRINT2D: Adaptive Software for PDEs,” In ACM Transactions on Mathematical Software, Vol. 24, No. 4, pp. 475--499. December, 1998.