Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2002


 R.S. MacLeod, Q. Ni, B. Taccardi. “Modeling Cardiac Bioelectricity in Realistic Volumes: How Real is Real?,” In Einthoven 2002, Leiden, Edited by M.J. Schalij and M.J. Janse and A. van Oosterom and H.J.J. Wellens and E.E. van der Wall, The Einthoven Foundation, pp. 45-56. 2002.


R.S. MacLeod, E.D. DiBella, B.B. Punske, E.K. Jeong. “Multimodal Imaging of Cardiac Activation, Perfusion, and Ischemia,” In 14th Annual Research Symposium of the Medical Imaging Research Laboratory, 2002.


W. Martin, E. Reinhard, P. Shirly, S.G. Parker, W. Thompson. “Temporally Coherent Interactive Ray Tracing,” In Journal of Graphics Tools, Vol. 7, No. 2, pp. 41--48. 2002.


S.S. Nagarajan, O. Portniaguine, K. Sekihara, D. Hwang, C.R. Johnson. “Performance of a Minimum-Support Imaging Method for Biomagnetic Source Localization,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 24th Annual International Conference, Houston, Vol. 3, pp. 2006-2007. October, 2002.


T. Nielsen, R.B. West, S.C. Linn, O. Alter, M.A. Knowling, J. O'Connell, S. Zhu, M. Fero, G. Sherlock, J.R. Pollack, P.O. Brown, D. Botstein, M. van de Rijn. “Molecular Characterisation of Soft Tissue Tumours: a Gene Expression Study,” In Lancet, Vol. 359, No. 9314, pp. 1301–-1307. April, 2002.
DOI: 10.1016/S0140-6736(02)08270-3


S.G. Parker. “Interactive Ray Tracing on a Supercomputer,” In In Practical Parallel Rendering, Edited by A. Chalmers and E. Reinhard, 2002.


S.G. Parker. “A Component-Based Architecture for Parallel Multi-physics PDE Simulation,” In Proceedings of the International Conference on Computational Science (ICCS) 2002, Vol. 2331, pp. 719--734. 2002.


V. Pascucci, K. Cole-McLaughlin. “Efficient Computation of the Topology of Level Sets,” In Proceedings of IEEE Conference on Visualization (VIS-02), Boston, MA, Note: UCRL-JC-149277, pp. 187--194. October, 2002.


V. Pascucci. “Slow Growing Subdivision (SGS) in Any Dimension: Towards Removing the Curse Of Dimensionality,” In Proceedings of Eurographics 2002, Saabruken, Germany, Note: UCRL-ID-144257, pp. 451--460. September, 2002.


V. Pascucci. “Slow Growing Volumetric Subdivision for 3D Volumetric Data,” In SIGGRAPH 2002 Technical Sketches, 2002.


O. Portniaguine, M.S. Zhdanov. “3-D Magnetic Inversion with Data Compression and Image Focusing,” In Geophys., Vol. 67, No. 5, pp. 1532--1541. September - October, 2002.


H.W. Quartero, J.G. Stinstra, E.G. Golbach, E.J. Meijboom, M.J. Peters. “Clinical Implications of Fetal Magnetocardiography,” In Ultrasound Obstet Gynecol, Vol. 20, No. 2, pp. 142--153. 2002.


E. Reinhard, C.D. Hansen, S.G. Parker. “Interactive Ray Tracing of Time Varying Data,” In Proceedings of The 4th Eurographics Workshop on Parallel Graphics and Visualization, Germany, pp. 77--82. September, 2002.


A.A. Samsonov, R.T. Whitaker, C.R. Johnson. “Noise-Adaptive Nonlinear Filtering Technique for SENSE-Reconstructed Images,” In Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Honolulu, pp. 74. 2002.


A.A. Samsonov, C.R. Johnson. “Noise-Adaptive Anisotropic Diffusion Filtering of MRI Images Reconstructed by SENSE (SENSitivity Encoding) Method,” In Proceedings of The 2002 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington DC, pp. 701--704. July, 2002.


A.A. Samsonov, R.T. Whitaker, E.G. Kholmovski, C.R. Johnson. “Parametric Method for Correction of Intensity Inhomogeneity in MRI Data,” In Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Honolulu, pp. 154. 2002.


A.A. Samsonov, E.G. Kholmovski. “Method for Quality Improvement of Images Reconstructed From Sensitivity-Encoded Data,” In Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Honolulu, pp. 2408. 2002.


Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Including Sparse Noisy Epicardial Potential Measurements Into Bayesian Inverse Electrocardiography,” In Proceedings of EMBC 2002, 2002.


Y. Serinagaoglu, R.S. MacLeod, B. Yilmaz, D.H. Brooks. “Multielectrode Venous Catheter Mapping as a High Quality Constraint for Electrocardiographic Inverse Solution,” In J. Electrocardiol., Vol. 35 (supplement), 2002.


J. Simpson, A.R. Sanderson, E. Luke, K. Balling, R. Coffey. “Collaborative Remote Visualization,” In Proceedings of the IEEE/ACM SC2002 Conference, Baltimore, Maryland, November, 2002.