Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


D.M. Weinstein, G. Kindlmann, E. Lundberg. “Stream Bundles - Cohesive Advection through Flow Fields,” University of Utah Technical Report, No. UUCS-99-005, School of Computing, 1999.

L. Zhukov, D.M. Weinstein, C.R. Johnson. “Independent Component Analysis For EEG Source Localization In Realistic Head Models,” In Third International Conference on Inverse Problems in Engineering, 1999.


O. Alter, Y. Yamamoto. “Impossibility of Determining the Unknown Wavefunction of a Single Quantum System: Quantum Non-Demolition Measurements, Measurements without Entanglement and Adiabatic Measurements,” In Fortschritte der Physik, Vol. 46, No. 6-8, pp. 817--827. November, 1998.

C.L. Bajaj, V. Pascucci, R.J. Holt, A.N. Netravali. “Dynamic Maintenance and Visualization of Molecular Surfaces,” In Proceedings of the 10th Canadian Conference on Computational Geometry (CCCG), Montreal, Quebec, Canada, Edited by Mike Soss, School of Computer Science, McGill University, pp. 68--69. August, 1998.

C.L. Bajaj, V. Pascucci, G. Rabbiolo, D.R. Schikore. “Hypervolume Visualization: A Challenge in Simplicity,” In Proceedings of the 1998 IEEE Symposium on Volume Visualization, pp. 95--102. 1998.

C.L. Bajaj, V. Pascucci, D.R. Schikore. “Visualization of Scalar Topology for Structural Enhancement,” In Proceedings of the 9th Annual IEEE Conference on Visualization (VIS-98), IEEE Computer Society, New York pp. 51--58. October, 1998.
ISBN: 1-58113-106-2

M. Berzins, P.J. Capon, P.K. Jimack. “On Spatial Adaptivity and Interpolation When Using the Method of Lines,” In Applied Numerical Mathematics, Vol. 26, pp. 117--134. 1998.

M. Berzins. “A Solution-Based Triangular and Tetrahedral Mesh Quality Indicator,” In SIAM Journal on Scientific Computing, Vol. 19, pp. 2051--2060. 1998.

M. Berzins, R. Fairlie, S.V. Pennington, J.M. Ware, L.E. Scales. “SPRINT2D: Adaptive Software for PDEs,” In ACM Transactions on Mathematical Software, Vol. 24, No. 4, pp. 475--499. December, 1998.

A.E. Bowden, R.D. Rabbitt, J.A. Weiss. “Anatomical Registration and Segmentation by Warping Template Finite Element Models,” In Proc. SPIE (Laser-Tissue Interaction IX), Vol. 3254, pp. 469--476. 1998.

J.C. Csernansky, S. Joshi, L. Wang, M. Gado, J.P. Miller, U. Grenander, M.I. Miller. “Hippocampal Morphometry in Schizophrenia by High Dimensional Brain Mapping,” In Proceedings of the National Academy of Science, Vol. 95, pp. 11406--11411. September, 1998.

L.J.K Durbeck, N.J. Macias, D.M. Weinstein C.R., J.M. Hollerbach. “SCIRun/Haptic Display for Flow Fields,” In Proceedings of the Third PHANTOM Users Group Workshop, AI Lab Technical Report No. 1643 and RLE Technical Report No. 624, Edited by J.K. Salisbury and M.A. Srinivasan, pp. 71--75. Dec, 1998.

C.D. Hansen. “EUROGRAPHICS '97 Conference Report,” In Computer Graphics Quarterly, Vol. 32, No. 1, pp. 39. February, 1998.

C.D. Hansen. “EUROGRAPHICS '97: Budapest, Hungary, September 4-8, 1997: Meeting Report,” In Computer Graphics Forum, Vol. 16, No. 5, pp. 323--324. February, 1998.

G. Hart, A. Tomlin, J. Smith, M. Berzins. “Multi-scale Atmospheric Dispersion Modelling by the Use of Adaptive Grid Techniques,” In Environmental Monitoring and Assessment, Vol. 52, pp. 225--228. 1998.

C.R. Johnson, R.S. MacLeod. “Adaptive local regularization methods for the inverse ECG problem,” In Progress in Biophysics and Biochemistry, Vol. 69, No. 2/3, pp. 405. Dec, 1998.

C.R. Johnson. “Computer Visualization in Medicine,” In National Forum, Vol. Fall, pp. 17--21. 1998.

C.R. Johnson, M. Berzins, L. Zhukov, R. Coffey. “SCIRun: Applications to Atmospheric Diffusion Using Unstructured Meshes,” In Numerical Methods for Fluid Dynamics VI, Edited by M.J. Baines, Oxford University Press, pp. 111--122. 1998.

G. Kindlmann, J. Durkin. “Semi-Automatic Generation of Transfer Functions for Direct Volume Rendering,” In IEEE Symposium on Volume Visualization, IEEE Press, pp. 79--86. Oct, 1998.

Y. Livnat, C.D. Hansen. “View Dependent Isosurface Extraction,” In IEEE Visualization '98, pp. 175--180. Oct, 1998.