June 2005 Commit Log

Number of Commits:
355
Number of Active Developers:
28
ayla 2005-06-30 21:37 Rev.: 30955

Use accessor for component class name.

1 lines of code changed in 1 file:

worthen 2005-06-30 20:41 Rev.: 30954

remove Switcher

1 lines of code changed in 1 file:

worthen 2005-06-30 20:36 Rev.: 30953

combine ComponentFactory and Switcher into Parent (hope it works; never done 'svn move' before)

336 lines of code changed in 12 files:

guilkey 2005-06-30 20:25 Rev.: 30952

Reverting back to agree with MPMBoundCond also being reverted.

0 lines of code changed in 1 file:

guilkey 2005-06-30 20:24 Rev.: 30951

Revert to two versions back. This isn't 100% right, but I hate it less
than what was committed yesterday. A final solution for setting the BCs
on the extra nodes still eludes... I also added IntVector nd = *b everywhere
since this is supposed to speed things up. Added still more brackets near
for loops and if statements.

43 lines of code changed in 1 file:

ayla 2005-06-30 18:19 Rev.: 30950

Use null TypeMap to initialize BabelComponentInstance.

5 lines of code changed in 1 file:

ayla 2005-06-30 18:16

Added properties to ComponentInstance.

28 lines of code changed in 6 files:

ayla 2005-06-30 18:15 Rev.: 30947

ComponentInstance::setComponentProperties is no longer inlined.

16 lines of code changed in 2 files:

ayla 2005-06-30 18:14 Rev.: 30946

Added properties to ComponentInstance.

38 lines of code changed in 2 files:

ayla 2005-06-30 17:47 Rev.: 30945

Generalize GUI naming convention from QtBuilder to SCIRun.Builder.

4 lines of code changed in 1 file:

ayla 2005-06-30 17:30 Rev.: 30944

Added properties to ComponentInstance.

26 lines of code changed in 6 files:

ayla 2005-06-30 17:23 Rev.: 30943

Added properties to ComponentInstance.

47 lines of code changed in 6 files:

ayla 2005-06-30 17:17

Added properties to ComponentInstance.

151 lines of code changed in 14 files:

livne 2005-06-30 17:06 Rev.: 30939

2-level seems to work on a Gaussian RHS problem, but second level does not justify by much the extra work in the accuracy received. Try a more severe singularity like re-entrant corner to verify.

173 lines of code changed in 12 files:

ayla 2005-06-30 16:58 Rev.: 30938

Added component properties to ComponentInstance.

6 lines of code changed in 1 file:

banerjee 2005-06-30 16:56 Rev.: 30937

Get better estimate of plastic strain rate.

46 lines of code changed in 1 file:

ayla 2005-06-30 16:55 Rev.: 30936

Moved component properties to ComponentInstance class. Component properties should be obtained using the BuilderService.

50 lines of code changed in 3 files:

livne 2005-06-30 12:04 Rev.: 30932

2-level problem shows signs of working, but need to convert ghost variables to point values and put 0 on deleted boxes of coarse patches so that we can have a real comparison.

95 lines of code changed in 4 files:

ayla 2005-06-30 11:22 Rev.: 30931

Moved className and instanceName to protected scope, added accessors.

40 lines of code changed in 1 file:

worthen 2005-06-30 11:12 Rev.: 30930

Create a debugstream to show the BCTypes of patches when they are created

7 lines of code changed in 1 file:

livne 2005-06-30 10:04 Rev.: 30929

Corrected some bugs in setupInterface; still does not work in 2-level for a smooth problem

58 lines of code changed in 5 files:

worthen 2005-06-30 07:58 Rev.: 30928

include hypre_defs so we will create the hypre solver

1 lines of code changed in 1 file:

worthen 2005-06-30 07:34 Rev.: 30927

Delete DataArchive as soon as you're done with it rather than at the end of the simulation (and thus avoid a memory highwater increase)

43 lines of code changed in 1 file:

livne 2005-06-29 23:20 Rev.: 30926

Added the CF interface code in full; doesn't work yet

174 lines of code changed in 1 file:

ayla 2005-06-29 18:02 Rev.: 30925

Emit pending component instantiation event, create ComponentID while registering a component. Put member objects in private scope. Member function createComponentInstance should not be public.

217 lines of code changed in 2 files:

ayla 2005-06-29 17:55 Rev.: 30924

Revise error messages.

3 lines of code changed in 1 file:

ayla 2005-06-29 17:52 Rev.: 30923

BuilderService code cleanup, clarified some exception messages.

145 lines of code changed in 2 files:

ayla 2005-06-29 17:47 Rev.: 30922

Make constructor arguemnts constant references, add additional documentation.

0 lines of code changed in 6 files:

worthen 2005-06-29 16:06 Rev.: 30921

Don't include SimulationController.h in Arches.h (and fix things that get missed when this is removed)

2 lines of code changed in 3 files:

worthen 2005-06-29 16:05 Rev.: 30920

missed some ports in sus.cc...

2 lines of code changed in 1 file:

worthen 2005-06-29 16:04 Rev.: 30919

Provide interface to have the sim component output/read state in the timestep.xml file, resulting in a Switcher test to successfully restart before, after and during a component switch (and have compare_uda pass successfully)

79 lines of code changed in 12 files:

livne 2005-06-29 15:30 Rev.: 30918

Deleting correctly (seemingly at least) coarse-coarseUnderNeathFinePatch connections near C/F interface

28 lines of code changed in 3 files:

damevski 2005-06-29 14:46 Rev.: 30917

Fixed a bug.

0 lines of code changed in 2 files:

jas 2005-06-29 14:42 Rev.: 30916

Remove msus.

0 lines of code changed in 1 file:

worthen 2005-06-29 14:22 Rev.: 30914

sus - get component options (sim, lb, sched, solver, regridder) from a ups file. sim and solver also work from the command line

Switcher - load its own sims and problem_specs

Clean up factories

Retire unused files

556 lines of code changed in 21 files:

mdavis 2005-06-29 13:46 Rev.: 30911

Fix indicator button

1 lines of code changed in 1 file:

harman 2005-06-29 13:40 Rev.: 30910

Globally:
- useVariance -> d_useVariance
- encapsulated scalarVariance computation into a function
- added tableTest
scalar-f linearly increases with x
dump to cout table values and the pressure.
computeModelSources()
- deleted old debugging code.

88 lines of code changed in 2 files:

jas 2005-06-29 13:20 Rev.: 30907

Add oneCell offset to the right hand side assignments for the GIMP case.

6 lines of code changed in 1 file:

jas 2005-06-29 13:09 Rev.: 30906

Use the getNodeLowIndex and getNodeHighIndex for getFaceNodes so it returns
the proper nodes when extra cells are used.

5 lines of code changed in 1 file:

jas 2005-06-29 13:07 Rev.: 30905

Use the node boundary iterator and an offset for assigning bcs to the
extra cell nodes when using GIMP.

17 lines of code changed in 1 file:

banerjee 2005-06-29 12:55 Rev.: 30904

Another set of bug fixes. The Johnson-Cook and MTS models have been
thoroughly tested again and found running correctly at this version.
(in conjunction with the Mie-Gruneisen EOS and NPShear).

234 lines of code changed in 34 files:

livne 2005-06-29 12:52 Rev.: 30903

Incorporated setupPatchBC into setupPatchInterior, the latter now setting all interior and BC equations for a patch.

61 lines of code changed in 4 files:

damevski 2005-06-29 11:46 Rev.: 30902

Removed HAVE_BABEL requirement from bridging code.

3 lines of code changed in 2 files:

damevski 2005-06-29 11:31 Rev.: 30901

Added support for SCIM inside the SR2 tree.

17 lines of code changed in 1 file:

damevski 2005-06-29 11:30 Rev.: 30900

Added support for Lex files.

2 lines of code changed in 1 file:

damevski 2005-06-29 11:29 Rev.: 30899

Adding SCIM.

15722 lines of code changed in 81 files:

livne 2005-06-29 10:57 Rev.: 30898

Incorporated setupPatchEdge into setupPatchInterior, now dealing with all possible interior/edge cells when setting up the discrete equations in a patch.

164 lines of code changed in 5 files:

worthen 2005-06-29 09:17 Rev.: 30897

Use Dav's solution to fix the sgi MPMICE compile

15 lines of code changed in 1 file:

livne 2005-06-28 17:27 Rev.: 30896

Deleted some old files

0 lines of code changed in 2 files:

livne 2005-06-28 17:27 Rev.: 30895

1-level works, 2-level still not fully written. Missing - C/F interface code

867 lines of code changed in 19 files:

harman 2005-06-28 16:27 Rev.: 30894

added infrastructure support for specificVolume boundary conditions

80 lines of code changed in 5 files:

worthen 2005-06-28 15:26 Rev.: 30893

have refine and copy data play nicely

9 lines of code changed in 1 file:

harman 2005-06-28 15:19 Rev.: 30892

added machinery for Models tests

33 lines of code changed in 1 file:

worthen 2005-06-28 14:10 Rev.: 30891

get rid of debug print message

0 lines of code changed in 1 file:

guilkey 2005-06-28 13:33 Rev.: 30890

Can't have too many brackets.

10 lines of code changed in 1 file:

livne 2005-06-27 19:46 Rev.: 30889

Added alpha = size of cell parameter to setupPatchEdge

307 lines of code changed in 9 files:

dgroulx 2005-06-27 17:57 Rev.: 30888

Added optional output statements to all exception constructors. If you
configure with '--enable-exceptions-crash' all exceptions will print out their
message. This is for gcc3.3 and earlier compilers which do not properly
print out c++ exceptions.

106 lines of code changed in 22 files:

dgroulx 2005-06-27 17:54 Rev.: 30887

Changed the header includes so that this was not accidentally including the
MPI C++ headers.

0 lines of code changed in 2 files:

callahan 2005-06-27 16:15 Rev.: 30886

Add BioFEM about text. (from branch)

0 lines of code changed in 2 files:

worthen 2005-06-27 16:03 Rev.: 30884

Fix bogus-delt problem

9 lines of code changed in 1 file:

asade 2005-06-27 14:29 Rev.: 30882

Update from June demo

0 lines of code changed in 2 files:

damevski 2005-06-27 14:02 Rev.: 30880

Kwai is no longer needed.

1 lines of code changed in 2 files:

asade 2005-06-27 13:09 Rev.: 30879

Changes from the June demo

0 lines of code changed in 2 files:

livne 2005-06-27 12:40 Rev.: 30878

Added some news files

417 lines of code changed in 8 files:

worthen 2005-06-27 12:28 Rev.: 30877

Make models use MPI

0 lines of code changed in 2 files:

worthen 2005-06-27 12:19 Rev.: 30876

Make models RT work

5 lines of code changed in 2 files:

livne 2005-06-27 09:56 Rev.: 30875

Added LaplaceDFM after removing old svn control

0 lines of code changed in 37 files:

livne 2005-06-27 09:53 Rev.: 30874

Restructured directories in pressure solve. LaplaceDFM = DFM method for Laplace on multilevel grid. LaplacePanayot = Panayot Scheme on multilevel grid. DiffusionPanayot1Level = Panayot scheme for Diffusion eq on uniform grid.

3037 lines of code changed in 36 files:

livne 2005-06-27 09:51 Rev.: 30873

Some changes to DFM

3 lines of code changed in 5 files:

harman 2005-06-26 15:03 Rev.: 30872

ProblemSetup()
-moved BC_Bulletproofing below where materials are registered
-compiler warning.

7 lines of code changed in 2 files:

worthen 2005-06-24 19:59 Rev.: 30870

(hopefully) fix memory leak

8 lines of code changed in 1 file:

harman 2005-06-24 15:17 Rev.: 30869

Maul the user if they have BCType id = "all" specified for a single material problem.

45 lines of code changed in 3 files:

sparker 2005-06-24 13:04 Rev.: 30867

Initialize coarse level to a default value

54 lines of code changed in 2 files:

harman 2005-06-24 11:54 Rev.: 30866

Throw an exception if the user specifies either a circle, annulus, rectangle
on a boundary face and the geometry dimensions do not lie on that face.
If you move the resize the grid you have to move the fuel jet.

125 lines of code changed in 4 files:

worthen 2005-06-24 01:12 Rev.: 30865

Don't put proc in timestep.xml if it doesn't work on the specified level (so DataArchive functions will work)

12 lines of code changed in 1 file:

worthen 2005-06-24 00:32 Rev.: 30864

Get MPI AMR ICE to complete on 2 levels; however, it generates different results from serial

2 lines of code changed in 1 file:

sparker 2005-06-23 16:29 Rev.: 30860

Don't need ghost cells for coarsening operator (yet)

1 lines of code changed in 1 file:

sparker 2005-06-23 16:28 Rev.: 30859

More libraries needed for the mac

0 lines of code changed in 2 files:

damevski 2005-06-23 15:10 Rev.: 30858

Added some interface file pointers.

0 lines of code changed in 2 files:

damevski 2005-06-23 15:09 Rev.: 30857

Added some of the pointers to interface files.

0 lines of code changed in 2 files:

damevski 2005-06-23 15:09 Rev.: 30856

Changed to handle the new xml files.

80 lines of code changed in 1 file:

worthen 2005-06-23 14:49 Rev.: 30855

Change to clustering debug output

6 lines of code changed in 1 file:

worthen 2005-06-23 12:52 Rev.: 30854

IntVector: rewrite < and (didn't sort for STL functions) remove >, <=, >=

Everything else: Make Particle Subsets work with a specified range instead of with ghost cells

238 lines of code changed in 20 files:

sparker 2005-06-23 10:04 Rev.: 30853

Implemented rest of multilevel MPM, still doesn't work
Move interpolation operators from AMRICE to Core/Grid/Variables/AMRInterpolate.h so that they can be used in other places

580 lines of code changed in 11 files:

sparker 2005-06-23 09:59 Rev.: 30852

Arches needs to be linked against Core/Containers

0 lines of code changed in 2 files:

worthen 2005-06-23 09:07 Rev.: 30849

remove reference to scheduler3

0 lines of code changed in 1 file:

ayla 2005-06-22 17:38 Rev.: 30847

Map SCIRun execute function to CCA GoPort.

176 lines of code changed in 8 files:

callahan 2005-06-22 16:20 Rev.: 30843

Add support for preliminary test SCIRUN_NOGUI define

21 lines of code changed in 1 file:

damevski 2005-06-22 15:36 Rev.: 30842

Removed .cca file, added support for a single meta-model .xml file

88 lines of code changed in 1 file:

damevski 2005-06-22 15:35

BridgeTest.cca hello.cca NewPort.cca PrinterComponent.cca StarterComponent.cca who.cca whoc.cca whof77.cca

224 lines of code changed in 13 files:

damevski 2005-06-22 15:34 Rev.: 30839

Removing .cca files, changing to one meta-model xml

127 lines of code changed in 20 files:

damevski 2005-06-22 15:19

Added support for interface file locations

0 lines of code changed in 6 files:

worthen 2005-06-22 13:39 Rev.: 30832

Delete the regridder when completed

3 lines of code changed in 1 file:

worthen 2005-06-22 13:16 Rev.: 30830

Stop maintaining Scheduler3 (at least for the moment)

31 lines of code changed in 3 files:

worthen 2005-06-22 12:53 Rev.: 30829

use proper goldStandard dir

0 lines of code changed in 2 files:

ayla 2005-06-22 12:12 Rev.: 30828

Only Tao and Corba components should run updatePorts(): filter component model by module name.

8 lines of code changed in 1 file:

jas 2005-06-22 11:46 Rev.: 30823

Cleanup and get switching stuff working.

48 lines of code changed in 1 file:

jas 2005-06-22 11:45 Rev.: 30822

Change scheduleSwitchTest to an empty function.

3 lines of code changed in 2 files:

jas 2005-06-22 11:44 Rev.: 30821

Add components Test1 to ComponentFactory.
Can now switch betweend two simple components Test and Test1.
Add more refinements to Switch component for doing recompiles and
switchTests.
Cleanup of SimpleSimulationController and MultipleSimulationController.

789 lines of code changed in 12 files:

jas 2005-06-22 11:41 Rev.: 30820

Add checking of flag for the switchState for initialization of data output.

1 lines of code changed in 1 file:

jas 2005-06-22 11:39 Rev.: 30819

Change particleRelocation arguments to used sharedState instead of Mlb.

2 lines of code changed in 1 file:

jas 2005-06-22 11:38 Rev.: 30818

Change the particleRelocation arguments to use sharedState instead of lb.

0 lines of code changed in 2 files:

jas 2005-06-22 11:38 Rev.: 30817

Add sharedState to constructor for MPMMaterials.
Add switchTest task (schedule and actual task).

103 lines of code changed in 8 files:

jas 2005-06-22 11:36 Rev.: 30816

Add sharedState to constructor.

32 lines of code changed in 2 files:

jas 2005-06-22 11:35 Rev.: 30815

Add sharedState to constructors.

37 lines of code changed in 21 files:

jas 2005-06-22 11:32 Rev.: 30814

Move particleState to SimulationState.
Add switchLabel.

7 lines of code changed in 2 files:

jas 2005-06-22 11:31 Rev.: 30813

Move particleState from MPMLabels to SimulationState.
Add function to clear out Materials.
Add switchState flag.

41 lines of code changed in 2 files:

jas 2005-06-22 11:29 Rev.: 30812

Add specializations for different data types for SoleVariable.
Use swapbytes defined in Endian.cc for ReductionVariable.

57 lines of code changed in 3 files:

jas 2005-06-22 11:19 Rev.: 30811

Add swapbytes(bool) empty function.

0 lines of code changed in 4 files:

banerjee 2005-06-22 11:19 Rev.: 30810

Get the formatting OK.

63 lines of code changed in 1 file:

banerjee 2005-06-22 11:16 Rev.: 30809

Turn off clamping of R and U in polar decomposition. This change will
break the regression tester in a few places.

6 lines of code changed in 1 file:

banerjee 2005-06-22 11:01 Rev.: 30808

The convention in the implcit code appears to be :
stress : [s11 s22 s33 s12 s23 s31] strain : [e11 e22 e33 2e12 2e23 2e31]
(based on HypoElasticImplicit.cc).
Changed the consistent tangent modulus computation to reflect this convention.

109 lines of code changed in 1 file:

worthen 2005-06-22 10:17 Rev.: 30807

get rid of DataArchive print statement. James, let us know if you still need this...

0 lines of code changed in 1 file:

callahan 2005-06-21 18:39 Rev.: 30806

Better ClipField and ClipByFunction documentation, bug #2678 (from branch)

17 lines of code changed in 2 files:

ayla 2005-06-21 18:37 Rev.: 30804

Move Tcl thread runnable class to separate file, use default Qt X Error handler.

280 lines of code changed in 5 files:

callahan 2005-06-21 17:57 Rev.: 30803

Better useability for ClipField and ClipByFunction modules, bug #2678 (from branch)

6 lines of code changed in 2 files:

harman 2005-06-21 14:50 Rev.: 30799

setBC(Press) hydrostatic pressure correction
- added dot product of gravity and distance
- made the condtional statement slightly clearer.

37 lines of code changed in 1 file:

ayla 2005-06-21 11:42 Rev.: 30798

Add ZListWriter to component subdirectories.

0 lines of code changed in 2 files:

jas 2005-06-21 10:41 Rev.: 30796

Comment out warning for particle expansions exceeding 18.

2 lines of code changed in 1 file:

worthen 2005-06-20 23:34 Rev.: 30793

Don't compile on sgi, as it comes up with runtime undefined symbol errors. We'll probably soon have to come up with a configure mechanism to enable or disable this

1 lines of code changed in 1 file:

worthen 2005-06-20 23:00 Rev.: 30792

Keep around both the original and the restart udas (if disk space becomes an issue we can resolve it later). Maintain the link in the test dir to be to the original uda, so replace_gold_standard will use that one instead

3 lines of code changed in 1 file:

ayla 2005-06-20 19:34 Rev.: 30791

Re-introduce the make_icon proc and add redrawMinicanvas to SCIRun2-specific addModule2 proc to keep tcl from complaining about the missing msg.indicator.

4 lines of code changed in 1 file:

ayla 2005-06-20 19:16 Rev.: 30790

Use standard C++ rule to build main.cc with the addition of the macro definition for SIDL_BUILTINS.

0 lines of code changed in 2 files:

mdavis 2005-06-20 17:35 Rev.: 30788

Configure checks for existance of Insight version of library before adding it to the link line. If not found, default to system image libraries if they exist.

126 lines of code changed in 2 files:

ayla 2005-06-20 16:56 Rev.: 30785

Minor change to TAO component directory name.

0 lines of code changed in 2 files:

damevski 2005-06-20 16:45 Rev.: 30783

Fixed the fix to the previous bug.

4 lines of code changed in 1 file:

damevski 2005-06-20 14:58 Rev.: 30780

Fixed a (absolute file path) bug

1 lines of code changed in 1 file:

mdavis 2005-06-20 12:08 Rev.: 30779

Fix creation of modules broken by my Friday checkin

3 lines of code changed in 1 file:

darbyb 2005-06-20 11:48 Rev.: 30778

Minor ITK fixes (sync with branch).

0 lines of code changed in 19 files:

worthen 2005-06-20 09:11 Rev.: 30776

Disable use of Mark's MPI stuff on APPLE, doesn't compile

2 lines of code changed in 1 file:

worthen 2005-06-20 08:04 Rev.: 30775

Get rid of unnecessary particlesubset spew

1 lines of code changed in 1 file:

bigler 2005-06-18 13:52 Rev.: 30774


Put stubs for the AllocatorSetDefaultTag family of functions for when
you have DISABLE_SCI_MALLOC set. A little bit of code reorganization
done as well.

63 lines of code changed in 1 file:

ayla 2005-06-17 16:52 Rev.: 30773

Add ACE Tao include files and libraries for compiling Tao components in SCIRun2.

14 lines of code changed in 3 files:

mdavis 2005-06-17 15:24 Rev.: 30772

Check for existance of icon fixes running dataflow components for SCIRun2

16 lines of code changed in 2 files:

hartner 2005-06-17 14:29 Rev.: 30769

code to use a seperate thread for mpi communication.
it is #ifdef'd to compile when lam-mpi is being used (ie inferno)

it doesn't actually turn on unless you pass -threadmpi to sus

4724 lines of code changed in 10 files:

harman 2005-06-17 09:36 Rev.: 30767

To cut down on the multiprocessor spew use a progressive warning
on
" WARNING: ICE Advection operator influx outflux volume error.
The bulletproofing that usuallycatches this has been disabled "

21 lines of code changed in 6 files:

harman 2005-06-16 14:19 Rev.: 30765

Fixed BC bug. multimaterial & dirichlet pressure boundary conditions
was returning negative pressures. Changes tested on JP8_IS_lowres.ups

ICE.cc
restartInitialize() & actuallyInitialze
- changed the definition of d_surroundingMatl_indx
from m to ice_matl_getDWIndex()

initializeSubTask_hydrostaticAdj()
-rearranged

BoundaryCond.cc
setBC(Press) hydrostatic section
-rearranged


45 lines of code changed in 2 files:

callahan 2005-06-16 11:24 Rev.: 30759

Remove more dead code

86 lines of code changed in 1 file:

callahan 2005-06-16 11:05 Rev.: 30757

Remove dead GeomSquare code

0 lines of code changed in 1 file:

callahan 2005-06-16 11:03 Rev.: 30756

change set_matl to set_material and emit_matl to emit_material

54 lines of code changed in 8 files:

callahan 2005-06-16 10:29 Rev.: 30755

minor cleanup, reformat if statements, add spaces, untabify

3530 lines of code changed in 1 file:

callahan 2005-06-16 09:52 Rev.: 30754

minor cleanup, fix formatting between functions

214 lines of code changed in 1 file:

guilkey 2005-06-15 20:57 Rev.: 30749

Would it kill you people to do:

if(...){
for(...){
I know it's only one line, use a damn bracket!
}
}

???

6 lines of code changed in 1 file:

guilkey 2005-06-15 20:06 Rev.: 30748

Sweep up Todd's poo.

9 lines of code changed in 1 file:

livne 2005-06-15 18:50 Rev.: 30747

DFM does as good as can be expected. About O(h^2) for the smooth RHS problem. Matrix is symmetric but large errors near corners.

166 lines of code changed in 12 files:

harman 2005-06-15 14:57 Rev.: 30744

throw an exception if the reference pressure hasn't been set and you're
running a problem that uses ICE.

9 lines of code changed in 1 file:

worthen 2005-06-15 13:51 Rev.: 30743

Move AllocatorSet*Tag stuff to be outside the auspices of #ifndef DISABLE_SCI_MALLOC

5 lines of code changed in 1 file:

callahan 2005-06-15 12:43 Rev.: 30742

Check for object version compatability in TextPiostream

10 lines of code changed in 1 file:

ayla 2005-06-15 12:25 Rev.: 30741

Add Core/TkExtensions library to PSELIBS.

4 lines of code changed in 1 file:

ayla 2005-06-15 12:18 Rev.: 30740

Check for Qt before adding it's libraries.

0 lines of code changed in 2 files:

worthen 2005-06-15 10:52 Rev.: 30739

Fix Bug 2699, where AMR crashes in ScheduleDataCopy

15 lines of code changed in 1 file:

skumar 2005-06-15 00:21 Rev.: 30738


Indentation

189 lines of code changed in 6 files:

skumar 2005-06-14 23:53 Rev.: 30737

1.
Fixed bug in nongray calculations with Spherical Harmonics.
Previously this would not run in parallel. For this, needed to
change all requires to requires with one ghost cell (in schedule
intensitysolve). Also, in same function, changed abskg, esrcg,
and shgamma to requires from modifies. These are now getCopied
with one ghost cell each.
2.
Fixed bug in m_radwsgg, so that now corners and edges of patches are not
accessed...was causing a floating point exception.
3.
Some spacing and indentation, and garbage removal.
4.
Still need to parallelize fluxes in spherical harmonics.

61 lines of code changed in 7 files:

ayla 2005-06-14 18:21 Rev.: 30736

Bug 2644: use a simplified version of TCLThread to start Tcl/Tk for SCIRun dataflow modules.

135 lines of code changed in 2 files:

livne 2005-06-14 17:17 Rev.: 30734

Each test now has its output directory

8 lines of code changed in 1 file:

livne 2005-06-14 17:11 Rev.: 30733

Added some files for latex table printout from matlab with results (discretization error, factors, solution plots, disc. error plots)

1068 lines of code changed in 14 files:

callahan 2005-06-14 17:03 Rev.: 30731

Bug #2685: Allow multiple texture bricks on the video card. This is because Apple limits the texture size to be 128 even though many of these would fit on the card. This makes Apple volume rendering much faster.

36 lines of code changed in 4 files:

harman 2005-06-14 16:38 Rev.: 30729

updatePressure()
1) press_CC = pressure in all cells including the extra cells.
2) press_CC += imp_delP in interior cells
For AMR you must have a valid pressure in the extra cells and
there is no setBC for imp_delP yet.....

7 lines of code changed in 1 file:

banerjee 2005-06-14 16:27 Rev.: 30728

Fixed dispNew bug.

1 lines of code changed in 1 file:

ayla 2005-06-14 15:46 Rev.: 30726

Use the updatePorts() function only if TAO Corba is available.

3 lines of code changed in 1 file:

kzhang 2005-06-14 15:09 Rev.: 30725

compile testDT only with MPI

0 lines of code changed in 2 files:

kzhang 2005-06-14 15:08 Rev.: 30724

remove MPI requirement from SCIRunLoader

2 lines of code changed in 2 files:

worthen 2005-06-14 14:48 Rev.: 30723

Get rid of the easy (scinew) AMR-related memory leaks

10 lines of code changed in 2 files:

mdavis 2005-06-14 14:33 Rev.: 30722

Cleanup Network and NetworkEditor code a bit. No functional changes, just less code to maintain. Removed Network::nconnections(). Module::set_context removed Scheduler parameter. Throw error strings in NetworkEditor::tcl_command.

148 lines of code changed in 10 files:

mdavis 2005-06-14 14:21 Rev.: 30721

Middle mouse button moves other slices immediately without dragging

12 lines of code changed in 2 files:

dav 2005-06-14 14:05 Rev.: 30720

Added example of how to read data from input xml file. It is commented out currently.

0 lines of code changed in 2 files:

kzhang 2005-06-14 13:26 Rev.: 30719

remove <mpi.h>

0 lines of code changed in 1 file:

livne 2005-06-14 12:57 Rev.: 30718

Entire system is symmetric for 2-level, and seems to do what the scheme is supposed to do. Large errors appear at the corners of the fine patch, probably due to wrong DFM there.

538 lines of code changed in 8 files:

worthen 2005-06-14 12:06 Rev.: 30716

OtherLevelPatches to work with extraCells on the FineLevel

30 lines of code changed in 1 file:

mdavis 2005-06-14 10:00 Rev.: 30713

Bug #2684: Fix convert of files with spaces in the filename

2 lines of code changed in 1 file:

asade 2005-06-13 19:17 Rev.: 30710

Alarm update

0 lines of code changed in 2 files:

banerjee 2005-06-13 18:33 Rev.: 30709

Extract the stresses as a function of time given a set of particle ids.

317 lines of code changed in 1 file:

mjc 2005-06-13 18:28 Rev.: 30707

changes for permuted hips, and potentials on surface

69 lines of code changed in 2 files:

banerjee 2005-06-13 17:33 Rev.: 30706

Get the particle ids and coordinates of particles inside an input
bounding box (at the first timestep).

182 lines of code changed in 1 file:

livne 2005-06-13 17:10 Rev.: 30704

Now matrix is symmetric for 2-level; but check discretization accuracy on the AMR grid, vs. h for the smooth model problem

14 lines of code changed in 2 files:

livne 2005-06-13 16:59 Rev.: 30703

Implemented the entire discretization, but it is not yet correct. It is symmetric and correct for 1-level but not for 2-level yet.

145 lines of code changed in 6 files:

kzhang 2005-06-13 15:57 Rev.: 30702

remove included file:mpi.h

0 lines of code changed in 3 files:

worthen 2005-06-13 15:39 Rev.: 30701

Remove debug output

0 lines of code changed in 1 file:

worthen 2005-06-13 15:11 Rev.: 30700

Remove unused code from Regridder; change patch overlap test to not include extra cells

12 lines of code changed in 2 files:

kzhang 2005-06-13 14:33

remove linkage of MPI_LIBRARY

0 lines of code changed in 3 files:

kzhang 2005-06-13 14:20 Rev.: 30696

move MPI code out from PRMI.*

26 lines of code changed in 4 files:

kzhang 2005-06-13 14:19 Rev.: 30695

move PRMI initialization to ploader

47 lines of code changed in 1 file:

dav 2005-06-13 13:46 Rev.: 30693

Created a README file to discuss what compare_mms does. Added a very preliminary description.

4 lines of code changed in 1 file:

dav 2005-06-13 13:44 Rev.: 30692

Added compare_mms subdirectory and 1st draft of code.

324 lines of code changed in 6 files:

worthen 2005-06-13 12:40 Rev.: 30691

PatchRangeTree: Don't use extra cells

Patch::getFace: don't use extra cells

Level: fix warnings

6 lines of code changed in 4 files:

worthen 2005-06-13 11:21 Rev.: 30690

Have ProgressiveWarning return true if it printed out its warning message, and have DW's Reallocation message be a progressiveWarning that will give more info if the warning was printed out

21 lines of code changed in 5 files:

worthen 2005-06-13 11:00 Rev.: 30689

Clearer message about Reallocation needed

5 lines of code changed in 1 file:

harman 2005-06-13 10:37 Rev.: 30688

- neutered Steve's changes, turning AMR back on.

scheduleReflux_computeCorrectionFluxes()
- straightened ou the models variables
- bring in rho_CC and specific Heat gac 1

reflux_computeCorrectionFluxes()
- Sanity spew
- added conditional: only hit the operators
if the there is a CFI face on that patch
- cleaned up Models section

refluxCoarseLevelIterator()
- return a flag (isRight_CP_FP_pair) indicating if
the iterator will work with this coarse/fine patch pair.

refluxOperator_computeCorrectiveFluxes()
- eliminated Q(*)_coarse_flux.initialize(d_EVIL_NUM)
this was indirect bulletproofing that didn't work. Need to
add something to make sure that the applyCorrectivefluxes routine
is using the right data.
- eject if the right coarse/fine patch pair is not found

scheduleReflux_applyCorrection()
- use gac,1 for the flux requires.
- cleaned up calls to refluxOperator_applyCorrectionFluxes

refluxOperator_applyCorrectionFluxes()
- eject if the right coarse/fine patch pair is not found


183 lines of code changed in 2 files:

guilkey 2005-06-13 09:58 Rev.: 30687

Print out a little more of the comment so that users will know to ignore
a particular error message if it occurs on the first timestep.

2 lines of code changed in 1 file:

dgroulx 2005-06-13 09:02 Rev.: 30686

Added member variable `double d_isothermal`, this variable was used in the last commit to ElasticPlastic.cc but never declared.

1 lines of code changed in 1 file:

asade 2005-06-13 08:21 Rev.: 30685

Resources for StatForecast display.

0 lines of code changed in 16 files:

asade 2005-06-13 08:14 Rev.: 30684

Added threshold adjustments to the StatForecast display.

138 lines of code changed in 3 files:

asade 2005-06-13 08:13 Rev.: 30683

Slight mod to tooltip messages

0 lines of code changed in 2 files:

banerjee 2005-06-12 18:40 Rev.: 30682

1) Added option for doing isothermal runs. Useful for verification.
2) Reverted back to using plastic strain rate at the beginning of the
time step for finding the estimate for yield stress. This leads
to the most reasonable value.
3) Removed inadverdently left-in print statements.

33 lines of code changed in 1 file:

banerjee 2005-06-12 18:37 Rev.: 30681

Corrected calculation of the logarithmic (true) strain.

0 lines of code changed in 2 files:

harman 2005-06-12 17:51 Rev.: 30680

added bool hasCoarseFineInterfaceFace()
-If the patch contains a coarse fine interface return true

9 lines of code changed in 2 files:

asade 2005-06-12 13:56

Statistical Forecast Display

2274 lines of code changed in 7 files:

harman 2005-06-12 13:10 Rev.: 30677

Added the dummy label "AMR_SyncTaskgraph"
With recursive tasks + AMR you need to compute something
inside of refineCoarseFineInterfaces() to sync the task graph
on level > 0

21 lines of code changed in 4 files:

mjc 2005-06-11 16:18 Rev.: 30676

read phase lookup sizes from the properties

17 lines of code changed in 1 file:

mjc 2005-06-11 13:31 Rev.: 30675

incorporate healthy with injured

64 lines of code changed in 1 file:

livne 2005-06-11 11:21 Rev.: 30674

Corrected undefined variable q

2 lines of code changed in 1 file:

banerjee 2005-06-10 18:45 Rev.: 30673

Fixed bugs in the implicit version of HypoeElasticPlastic and ElasticPlastic.
Added volume to the state structure.
Fixed long standing bug in the internal energy calculation in
Mie-Gruneisen EOS.

137 lines of code changed in 6 files:

guilkey 2005-06-10 18:37 Rev.: 30672

Only schedule tasks on the level called for in the input file.

9 lines of code changed in 1 file:

harman 2005-06-10 17:52 Rev.: 30671

split up the refluxing task into two tasks
reflux_computeCorrectionFluxes() & reflux_applyCorrectionFluxes()

Necessary for multipatch problems. Compute all the
correction fluxes on the coarse fine interface faces in one task.
Pull those fluxes out with gac,1 and add them to the underlying cell-centered
data.

463 lines of code changed in 2 files:

mjc 2005-06-10 17:03 Rev.: 30670

add phase_info port and use that data for phase

72 lines of code changed in 3 files:

livne 2005-06-10 17:01 Rev.: 30669

AlistInterfaceFlux = setupOperatorPatch(grid,k,q,P.ilower,P.iupper,0,1) outputs fine fluxes at the interface

33 lines of code changed in 3 files:

dav 2005-06-10 16:11 Rev.: 30668

Update to remove Arches and MPMArches from the list of required libraries for the CCa/Component lib.

40 lines of code changed in 1 file:

livne 2005-06-10 16:03 Rev.: 30667

1. Added plotGrid function that plots the grid to an eps file, then run latex grid.tex and print grid.ps (enlarged picture o fthe AMR grid). 2. Removing the underlying coarse nodes under a fine patch, disconnecting them from the rest of the coarse nodes, and putting there the identity operator, seems to work.

385 lines of code changed in 11 files:

dicksonsp 2005-06-10 15:21 Rev.: 30666

Increase time resolution 15 -> 1

1 lines of code changed in 1 file:

dav 2005-06-10 15:13 Rev.: 30665

Moved from StandAlone to CCA/Components (originally I did a CVS type update... this time I'm doing it correctly to keep the history around). These are commits towards updating the FakeArches stuff to handle the addition John made of the Components library.

0 lines of code changed in 6 files:

dav 2005-06-10 15:11 Rev.: 30664

Originally I created new versions of these files (ala CVS). I'm deleting them now so I can just use SVN to move them (keeping history intact).

0 lines of code changed in 3 files:

sparker 2005-06-10 14:04 Rev.: 30662

Split-level MPMICE implemented (ICE on level 0, MPM on level 1)
Still needs actual coarsen/refinement operators
multilevel_diw.ups is the test file
Fixed compile error (Components.so needs to link Arches and MPMArches libraries)

870 lines of code changed in 15 files:

jeroen 2005-06-10 11:55 Rev.: 30659

Fixed BUG with global variables from MATLAB

72 lines of code changed in 2 files:

xiongcw 2005-06-09 18:58 Rev.: 30653

Fixed bug that could not run on multiprocessors

26 lines of code changed in 1 file:

livne 2005-06-09 17:53 Rev.: 30652

Added functions to delete the equations at coarse nodes under a fine patch; not fully operational yet.

438 lines of code changed in 9 files:

kuzimmer 2005-06-09 17:17 Rev.: 30649

carry properties, like offset, forward when creatning a new field

182 lines of code changed in 4 files:

mjc 2005-06-09 16:22 Rev.: 30648

more carefull locking, and updates to ppvspace code

153 lines of code changed in 4 files:

harman 2005-06-09 14:48 Rev.: 30647

printPatchBCs()
- pass in ostream

3 lines of code changed in 2 files:

dav 2005-06-09 14:35 Rev.: 30646

Added isnan fix/hack for Mac. Organized #includes and used <> instead of quotes. Untabified. Made a few coding standard fixes. BTW, if you own this file, it has a number of warnings (as seen on the SGI compilation) that you might want to take a look at.

78 lines of code changed in 1 file:

livne 2005-06-09 13:51 Rev.: 30641

Now setting equations of ghost cells only at domain boundaries; if at an interior C/F interface, they do not have yet an equation and will later have an interpolation stencils from both C and F points. So right now, equations on different patches are disconnected from each other. Meaningful solution only at coarsest level that extends to all domain boundaries.

44 lines of code changed in 2 files:

worthen 2005-06-09 13:38 Rev.: 30640

Have RangeTree only take into account interior nodes

0 lines of code changed in 2 files:

livne 2005-06-09 13:37 Rev.: 30639

Added grid hierarchy printout; rewritten setupOperator to be patch-based: an operator on a patch is defined in setOperatorPatch, and also sets ghost cell equations to boundary conditions if patch is near domain boundary.

271 lines of code changed in 7 files:

worthen 2005-06-09 13:19 Rev.: 30638

Call DataArchive::query once per patch in data range instead of once per cell (with no exceptions)

81 lines of code changed in 1 file:

yguo 2005-06-09 12:59 Rev.: 30637

Automatically activate the area integral in J-integral calculation if contour integral is less than zero.

7 lines of code changed in 1 file:

yguo 2005-06-09 12:53 Rev.: 30636

Discard the volume criterion for detecting crack surface contact. Modify the displacement criterion.

32 lines of code changed in 1 file:

damevski 2005-06-09 10:54 Rev.: 30635

Added ACE-TAO Corba as a component model

36 lines of code changed in 1 file:

yguo 2005-06-09 10:13 Rev.: 30634

Discard
if(J1<0.) cout << "Warning: J1=" << J1 << ", less than zero." << endl;


0 lines of code changed in 1 file:

worthen 2005-06-08 22:40 Rev.: 30633

hack to lineextract to keep going if there are holes in the patches. When things settle down (or if it becomes more pressing) I can take a look at making this a non-hack, or improving the performance, as the basic design is kind of slow (i.e., each cell calls query(), and needs to figure out which patch it's on. We could just grab the entire patch instead).

13 lines of code changed in 1 file:

livne 2005-06-08 18:14 Rev.: 30632

setupOperator() accelerated - using arrays instead of loops.

75 lines of code changed in 2 files:

banerjee 2005-06-08 17:30 Rev.: 30631

1) Added implicit stress updates for ElasticPlastic and HypoElasticPlastic.
2) Small bugs fixes for NPShear and SCGMelt.
3) ImpMPM now saves the old temperature in pTempPrev.
4) ImplicitCM now requires delT and old volume in the shared adds
and requires for implicit calcs.
5) Got rid of pSpvol in SerialMPM.

3740 lines of code changed in 12 files:

livne 2005-06-08 16:59 Rev.: 30630

Changed DFM code to handle primitive tree structure in the grid+patch hierarchy. Gives O(h^2) accuracy for a Poisson problem with sinus source. Slow - need to update setupOperator().

470 lines of code changed in 10 files:

damevski 2005-06-08 16:32 Rev.: 30629

Added ACE-TAO Corba component model.

6700 lines of code changed in 34 files:

damevski 2005-06-08 16:24

Added ACE-TAO Corba component model.

652 lines of code changed in 8 files:

dav 2005-06-08 16:23 Rev.: 30625

Additional commits towards the updating of the FakeArches stuff to handle the addition John made of the Components library. (Also adding updated .h file I forgot to commit in last batch.)

800 lines of code changed in 4 files:

dav 2005-06-08 16:19 Rev.: 30624

Updates to sub.mk files and to FakeArches to make sus compile on the Mac (and on IBM (Frost)). FakeArches.cc is now used by the new CCA/Components library in addition to sus, so I've moved it into the Components directory and make it part of that library. Adjusted the useFakeArches.pl script to handle this. Updated (added necessary dependent libraries for Mac) and cleaned up sub.mk files. useFake[Other] scripts still need to be updated. Replaced relative #includes in some files with absolute (using <> instead of quotes). Added the mac gcc3.3 hack for isnan to a few files.

188 lines of code changed in 11 files:

dav 2005-06-08 16:19 Rev.: 30623

Formatted code to follow standard a little more closely. (Specifically, return types of functions on own line, and '_' on class variables.) Removed tabs.

295 lines of code changed in 4 files:

dav 2005-06-08 16:17 Rev.: 30622

Actually check return result of the stat command, and if the file does not exist, show an error msg and return instead ofletting Xerces through a non-intuitive exception. Turned off verbosity on DataArchive constructor.

0 lines of code changed in 2 files:

dav 2005-06-08 16:16 Rev.: 30621

Removed debug statement.

0 lines of code changed in 1 file:

dav 2005-06-08 16:02 Rev.: 30620

Cleaned up formatting.

18 lines of code changed in 1 file:

dav 2005-06-08 15:53 Rev.: 30619

No input data is a warning, not an error.

1 lines of code changed in 1 file:

dav 2005-06-08 15:52 Rev.: 30618

Changed cerr to printf as in some situations, cerr crashes (usually in static constructors, I guess before iostream has been initialized).

29 lines of code changed in 1 file:

dav 2005-06-08 15:50 Rev.: 30617

At least OSX 10.3 seems to need the -single_module flag for compiling dylibs.

1 lines of code changed in 1 file:

callahan 2005-06-08 15:41 Rev.: 30616

Add a SolveMatrix convergence plot to the first panel of BioFEM

25 lines of code changed in 1 file:

callahan 2005-06-08 15:36 Rev.: 30615

Add a SolveMatrix convergence plot to the first panel of BioFEM

0 lines of code changed in 2 files:

harman 2005-06-08 15:06 Rev.: 30612

-added printPatchBCs() dumps out BC type for each patch face.
- changed output formatting on "<<" operator.

12 lines of code changed in 2 files:

worthen 2005-06-08 14:29 Rev.: 30610

Move the redundant-include check to Makefile after the sub.mks are included

32 lines of code changed in 2 files:

dgroulx 2005-06-08 13:50 Rev.: 30609

Added depenance on Packages/Uintah/CCA/Components/DataArchiver

1 lines of code changed in 1 file:

borodai 2005-06-08 13:35 Rev.: 30608

Correctly check for empty data from input port.
Dav.

7 lines of code changed in 1 file:

dgroulx 2005-06-08 13:30 Rev.: 30607

Added dependancies to Packages/Uintah/CCA/Ports and Packages/Uintah/Core/Util

2 lines of code changed in 1 file:

worthen 2005-06-08 13:25 Rev.: 30606

If {tcl/tk}Config.sh do not exist, then look for all includes in thirdparty/include, and generate TCL_VERSION from tcl.h

43 lines of code changed in 2 files:

dgroulx 2005-06-08 12:45 Rev.: 30605

Made the function definition of Models_PetscSolver::problemSetup match up with that in the header.

1 lines of code changed in 1 file:

livne 2005-06-08 11:51 Rev.: 30604

Added directory for Oren pressure solver development. Matlab is matlab tests with Distributive Flux Matching (DFM).

670 lines of code changed in 8 files:

harman 2005-06-08 07:54 Rev.: 30603

changed the exception about multimaterial diffusion to cout.

4 lines of code changed in 1 file:

skumar 2005-06-07 21:36 Rev.: 30602


1. Removed hardwiring of radiation solver switches in linear solvers;
now done dynamically according to radiation solver choice and linear
solver choice and specified in input file
2. Automated selection of linear solver and preconditioner choices
3. Print warnings and throw exceptions for certain solver choices

100 lines of code changed in 2 files:

harman 2005-06-07 17:50 Rev.: 30601

linearInterpolation(), refine_CF_interface(), CoarseToFineOperator()
- Trashed the idea of using the center of the patch to decide which coarse
cells to interpolate from.

refine_CF_interface()
- expand the coarseLevel region that you grab when patch has a neighbor

errorEstimate()
- uncommented set_refineFlags() for pressure.

43 lines of code changed in 1 file:

dav 2005-06-07 16:20 Rev.: 30600

Call to set-isomatrix-list needs to have the module id.

2 lines of code changed in 1 file:

yguo 2005-06-07 13:02 Rev.: 30599

Set KI=0 if it is less than zero for crack propagation.

0 lines of code changed in 2 files:

dicksonsp 2005-06-07 12:22 Rev.: 30598

Demo-specific fix for timer input -- from Richard Ward

47 lines of code changed in 5 files:

callahan 2005-06-07 11:32 Rev.: 30597

Deprecate the GzipPiostream and GunzipPiostream classes, they are unused.

0 lines of code changed in 3 files:

callahan 2005-06-07 11:15 Rev.: 30596

Check against unsupported files using PERSISTENT_VERSION

17 lines of code changed in 3 files:

jas 2005-06-07 09:23 Rev.: 30594

Get switcher component working with msus.

66 lines of code changed in 2 files:

jas 2005-06-07 09:22 Rev.: 30592

Add switcher component.
Add switchComponent to SimulationInterface.

557 lines of code changed in 11 files:

darbyb 2005-06-07 07:35 Rev.: 30590

Hide visualization pane when closed so user can retrieve it later (same fix as done to other powerapps.

2 lines of code changed in 1 file:

dgroulx 2005-06-07 00:18 Rev.: 30589

Remove debug printouts.

0 lines of code changed in 1 file:

dgroulx 2005-06-06 23:57 Rev.: 30588

Mistyped variable name in previous commit, fixed this.

1 lines of code changed in 1 file:

dgroulx 2005-06-06 23:33 Rev.: 30587

Changed whitespace fix so that it will now look for all whitespace characters
in the entire string.

9 lines of code changed in 1 file:

dgroulx 2005-06-06 20:03 Rev.: 30586

Changed the white-space removal code in the ProblemSpec::get(string&)
function.

19 lines of code changed in 1 file:

skumar 2005-06-06 19:23 Rev.: 30585


"Make it so" that PETSc/HYPRE knows about the logical for spherical harmonics,
and sets a numerical parameter correctly. HYPRE parameter is set correctly;
PETSc is still hardwired. Minor printout change in rdombmcalc.
Minor indentation change in RadiationModel.

50 lines of code changed in 9 files:

yguo 2005-06-06 16:58 Rev.: 30584

Delete all the operations related to the parameters "separateVol" and "contactVol", which were used in the volume criterion for crack surface contact detection. The volume criterion has been discarded.

0 lines of code changed in 1 file:

yguo 2005-06-06 16:56 Rev.: 30583

Delete parameters "separateVol" and "contactVol", which were used in the volume criterion for crack surface contact detection. The volume criterion has been discarded.

0 lines of code changed in 1 file:

yguo 2005-06-06 16:53 Rev.: 30582

1. Get rid of the volume criterion of crack surface contact.
2. Add in velocity check before using the displacement criterion for crack surface contact detection.

33 lines of code changed in 1 file:

guilkey 2005-06-06 16:51 Rev.: 30581

Don't try to initialize pSp_Vol since it isn't created anymore.

1 lines of code changed in 1 file:

yguo 2005-06-06 15:45 Rev.: 30580

Get rid of pSp_volLabel.

8 lines of code changed in 1 file:

callahan 2005-06-06 15:08 Rev.: 30577

remove unneeded BinaryPiostream(string) code, no longer needed.

17 lines of code changed in 1 file:

worthen 2005-06-06 14:36 Rev.: 30576

Don't get the var to refine into with ghost cells

6 lines of code changed in 1 file:

guilkey 2005-06-06 14:34 Rev.: 30575

Replaced atoi with atof where needed, and fixed an indexing problem with
array sizes.

0 lines of code changed in 2 files:

guilkey 2005-06-06 14:33 Rev.: 30574

Courtesy of Andrew Brydon, now when pfs splits a large file containing
particle locations, it can write the split files out as native binary.
FileGeometryPiece has also been modified to handle these split binary files.
This will allow use of much less disk space and should make reading the points
go much more quickly.

112 lines of code changed in 4 files:

dmw 2005-06-06 14:11 Rev.: 30573

- Explicit casts to quiet compiler warnings

7 lines of code changed in 1 file:

yguo 2005-06-06 10:04 Rev.: 30571

Change
child_ps->get("Vc",Vc);
child_ps->get("KIc",KIc);
into
child_ps->require("Vc",Vc);
child_ps->require("KIc",KIc);

5 lines of code changed in 1 file:

yguo 2005-06-06 09:54 Rev.: 30570

Once the new position of a crack node is obtained, check if it is outside the gloabl grid.

10 lines of code changed in 1 file:

asade 2005-06-06 08:09

Added finer grained time control. Increment and decrement by 1s, 1m, or 10m.

72 lines of code changed in 3 files:

harman 2005-06-05 15:23 Rev.: 30566

added findTimestep_loopLimits()
-encapsulated code that finds the timestep looping limits
- replaced the copy/paste code with function call

GridStats
- restrict when stats are dumped to within timestep_lower and timestep_upper

34 lines of code changed in 1 file:

harman 2005-06-05 12:57 Rev.: 30565

printStatistics()
-changed cerr to cout, needed if you want to search results in matlab

9 lines of code changed in 1 file:

harman 2005-06-05 10:20 Rev.: 30564

- more descriptive exception messages.
queryGrid()
- To eliminate a warning ignore "extraCells" in some really convoluted code

35 lines of code changed in 1 file:

jeroen 2005-06-04 01:38 Rev.: 30562

more fixes

8 lines of code changed in 1 file:

hartner 2005-06-03 23:41 Rev.: 30561

revert last commit

1 lines of code changed in 1 file:

hartner 2005-06-03 23:38 Rev.: 30560

fix compile error

1 lines of code changed in 1 file:

hartner 2005-06-03 23:23 Rev.: 30559

restart an amr ice problem (need to set the level's extra cells)

6 lines of code changed in 2 files:

jeroen 2005-06-03 22:31 Rev.: 30558

Fixed problem loading Tensors and Vectors in LatVol and Image fields

4 lines of code changed in 1 file:

jas 2005-06-03 18:47 Rev.: 30557

Add SchedulerFactory.

87 lines of code changed in 2 files:

jas 2005-06-03 18:47 Rev.: 30556

Add SimulationControllerFactory.

0 lines of code changed in 2 files:

jas 2005-06-03 18:45 Rev.: 30555

Add RegridderFactory.

49 lines of code changed in 2 files:

jas 2005-06-03 18:45 Rev.: 30554

Add LoadBalancerFactory.

91 lines of code changed in 2 files:

jas 2005-06-03 18:44 Rev.: 30553

Add SolverFactory.

62 lines of code changed in 2 files:

jas 2005-06-03 18:38 Rev.: 30552

Revamped sus without the command line switches. Can read input file to
determine the component to select.

559 lines of code changed in 2 files:

jas 2005-06-03 18:35 Rev.: 30551

Simple test for SoleVariables.

179 lines of code changed in 2 files:

jas 2005-06-03 18:34 Rev.: 30550

Controller for doing multiple simulations, back to back. Doesn't share
DataWarehouse.

615 lines of code changed in 2 files:

jas 2005-06-03 18:33 Rev.: 30549

Create factories for the various components.

256 lines of code changed in 20 files:

jas 2005-06-03 18:30 Rev.: 30547

Can retrieve the ith port from a UintahParallelComponent. Can have multiple
connections to a port.

26 lines of code changed in 4 files:

guilkey 2005-06-03 18:27 Rev.: 30546

Added the ability to read an extra variable (temperature) from .pts files.

67 lines of code changed in 10 files:

harman 2005-06-03 18:26 Rev.: 30545

tabs
- added command line option to dump out cell coordinates instead of just
cell indices
- Only dump data if the requested level exists at the timestep. Sometimes they don't.
- only dump data along the intersection of what the user has requested and
the level cell index range. The user has no idea what the level cell
index range is as a function of time, so just specify something big.

88 lines of code changed in 1 file:

callahan 2005-06-03 17:16 Rev.: 30544

Fix reading of empty strings in version 1 BinaryPiostream objects

18 lines of code changed in 1 file:

worthen 2005-06-03 13:52 Rev.: 30540

More debug info and don't use extra cells in determining the range of subpatches

15 lines of code changed in 2 files:

dav 2005-06-03 12:55 Rev.: 30539

Fixed comment typo. PETSC-UNI must be PETSC_UNI as dashes aren't allowed in variable names. If the user uses --with-ruby, this makes it required. (Removed extraneous ';'.)

50 lines of code changed in 2 files:

dmw 2005-06-03 12:48 Rev.: 30538

- These two checks made it impossible to add a new Category to the Teem, so I'm removing them. (sync with branch commit 30483)

0 lines of code changed in 1 file:

hartner 2005-06-03 12:32 Rev.: 30537

change website from www.sci.utah.edu/~worthen to www.csafe.utah.edu/tester

21 lines of code changed in 3 files:

harman 2005-06-03 12:30 Rev.: 30536

problemSetup_BulletProofing()
- only do maxTimestepsBetweenRegrid & d_cellCreationDilation check on L-0.

6 lines of code changed in 1 file:

hartner 2005-06-03 12:22 Rev.: 30535

update website permissions after every test group instead of after all of them

3 lines of code changed in 3 files:

callahan 2005-06-03 11:03 Rev.: 30532

Reset global state for orientation axis, bug #2668

3 lines of code changed in 1 file:

damevski 2005-06-03 10:50 Rev.: 30531

Fixed bug when compiling bridge code with babel

2 lines of code changed in 2 files:

oscar 2005-06-03 10:30 Rev.: 30529

fixed error check for eval function

0 lines of code changed in 2 files:

oscar 2005-06-03 10:26 Rev.: 30528

added gui->eval task

73 lines of code changed in 3 files:

darbyb 2005-06-03 10:24 Rev.: 30527

Instead of destroying powerapp panes, just withdraw them so the user can easily get them back. I added methods to the base class to be able to withdraw/restore them and added a menu option to Restore Panes (also Control-R). In each powerapp, I specified the WM_DELETE_WINDOW protocol for the panes. (sync with branch)

47 lines of code changed in 5 files:

harman 2005-06-03 10:19 Rev.: 30526

-encapsulated bulletproofing into one function
-added bullet proofing for 2D problems

52 lines of code changed in 2 files:

guilkey 2005-06-03 10:06 Rev.: 30524

Commenting out a line about "SETTING TRR to 2". I'd rather not see that
# of patches times either.

1 lines of code changed in 1 file:

guilkey 2005-06-03 10:04 Rev.: 30523

Removed a line of spew from each about the ViscoScram labels. Don't need
to see that # of patches times.

0 lines of code changed in 2 files:

guilkey 2005-06-02 19:18 Rev.: 30517

Implemented perfect thermal contact between multiple materials. Added
ability to consider external heat sources, fixed small bugs.

76 lines of code changed in 2 files:

skumar 2005-06-02 17:37 Rev.: 30516


Changed names of subroutines (changing filenames is not enough! :-) in
fortran directory of Models/Radiation from x to m_x to avoid further
conflicts with Arches/MPMArches

23 lines of code changed in 21 files:

skumar 2005-06-02 16:23 Rev.: 30514


Made mmWallCellTypeInit require cellType from old DataWarehouse,
even when it is not needed on restart. This is necessary because
otherwise cellType is never required on restart, causing it to have
material none, which is why the restart was failing.

Now MPMArches restart tests should pass on the checkpoints (once
the GS have been updated). (Thanks, Bryan!)

6 lines of code changed in 1 file:

skumar 2005-06-02 16:12 Rev.: 30513


Changed name of subroutine from fixradval to m_fixradval. The use of
fixradval was causing a conflict with the Arches fixradval and therefore
causing MPMArches tests to fail to complete. Now they should complete.
I will update the GS when the tests run next.

0 lines of code changed in 6 files:

dicksonsp 2005-06-02 15:53 Rev.: 30512

Bug Fix: Parsing XML Injury List -- Diagnosis

6 lines of code changed in 1 file:

worthen 2005-06-02 15:40 Rev.: 30511

Fix getOtherLevelPatches

4 lines of code changed in 1 file:

ayla 2005-06-02 15:16 Rev.: 30510

Only recurse if SUBDIRS is set in this makefile.

3 lines of code changed in 1 file:

harman 2005-06-02 14:56 Rev.: 30509

fixed copy-paste error in an exception message

1 lines of code changed in 1 file:

callahan 2005-06-02 13:48 Rev.: 30507

Fix crash bug for CurveField with basis == -1, bug #2581

4 lines of code changed in 1 file:

dgroulx 2005-06-02 13:09 Rev.: 30506

Moved constant static definitions into the source file to get sus to compile on Q.

17 lines of code changed in 2 files:

worthen 2005-06-02 12:58 Rev.: 30504

Don't print debug messages

0 lines of code changed in 1 file:

worthen 2005-06-02 12:51 Rev.: 30503

Don't check for turing MPI anymore

2 lines of code changed in 1 file:

harman 2005-06-02 12:32 Rev.: 30502

All:
cout_doing statements: added the level index

impICE.cc
updatePressure()
- when computing the pressure use ExtraCellIter instead of CellIter.
On fine levels the BC aren't set and you need a valid pressure in the extra cells.

- moved printData section above the bullet proofing.

33 lines of code changed in 2 files:

worthen 2005-06-02 12:11 Rev.: 30501

Undo last Fake Arches commit

13 lines of code changed in 2 files:

mdavis 2005-06-02 12:08 Rev.: 30500

Fix bug #2613: Paint Layers dont get saved using 'QuickSave' option. Completed code for PaintCM2Widget::io method.

14 lines of code changed in 1 file:

callahan 2005-06-02 12:04 Rev.: 30498

Support for dense-sparse matrix multiplies, from branch, bug #2598

38 lines of code changed in 4 files:

worthen 2005-06-02 11:49 Rev.: 30494

Fix partextract compile

2 lines of code changed in 1 file:

callahan 2005-06-02 11:34 Rev.: 30493

Test network for dense-sparse-matrix multiplication, from 1.24 branch

167 lines of code changed in 1 file:

darbyb 2005-06-02 11:22 Rev.: 30488

Verify Bug 2549 is fixed and fix parameter given to configure_readers method since name has been changed to Generic (not Nrrd).

1 lines of code changed in 1 file:

sparker 2005-06-02 10:29 Rev.: 30486

Added AMR scheduling for MPMICE
Cleaned up a few includes

67 lines of code changed in 4 files:

jeroen 2005-06-02 10:13 Rev.: 30485

Modules now remember previous file paths when opening dialog box

27 lines of code changed in 11 files:

jeroen 2005-06-02 10:12 Rev.: 30484

improvements on multifile support in nrrd data files

463 lines of code changed in 8 files:

xiongcw 2005-06-01 21:52 Rev.: 30482

improved steady_burn model

419 lines of code changed in 4 files:

harman 2005-06-01 18:57 Rev.: 30481

Added the bulletproofing function iteratorTest(). It detects
any fine level cell that won't be touched during the refine task.

CoarseToFineOperator()
- moved fl & fh outside of the coarsePatch loop. needed by interator
intersection calc.

ErrorEstimate() Hardcoded error flags section
- For all levels > 0 set an error flag
in a randomly selected cell

114 lines of code changed in 2 files:

ayla 2005-06-01 17:10 Rev.: 30480

MPI libraries lammpi++ and lammpio are no longer needed to fix MPI link errors in SCIRun2.

5 lines of code changed in 2 files:

kzhang 2005-06-01 16:27 Rev.: 30479

added sci_mpi.h

23 lines of code changed in 1 file:

bigler 2005-06-01 16:11 Rev.: 30478


Comments about how Xerces doesn't release the memory when you release
the DOMDocument, like it should.

7 lines of code changed in 2 files:

oscar 2005-06-01 15:59 Rev.: 30477

Added lines to PSELIBS to link Comm in Ptolemy Package. Used for starting SPA server

3 lines of code changed in 1 file:

oscar 2005-06-01 15:56 Rev.: 30476

Added support for starting the SPA server thread in the Ptolemy package.

30 lines of code changed in 1 file:

dicksonsp 2005-06-01 15:38 Rev.: 30474

Added: Diagnosis, Bug Fix: Probe Movement, Time-Sync of Injury List

100 lines of code changed in 5 files:

oscar 2005-06-01 15:33 Rev.: 30473

added comm

0 lines of code changed in 2 files:

kzhang 2005-06-01 15:24 Rev.: 30472

fixed the MPI link errors based on Dav's idea. If any one needs to include mpi.h, please include <sci_defs/mpi_defs.h> and then include <sci_mpi.h>.

27 lines of code changed in 23 files:

mdavis 2005-06-01 14:56 Rev.: 30470

Cleanup GuiContext class. Remove dead functions: GuiContext::lock, GuiContext::unlock, GuiContext::getName GuiContext::setName GuiContext::getPrefix, GuiContext::setType

151 lines of code changed in 8 files:

kzhang 2005-06-01 14:54 Rev.: 30469

fixed the MPI dependency problem. If one needs to include mpi.h, please include <sci_defs/mpi_defs.h> and then include <sci_mpi.h>.

228 lines of code changed in 34 files:

bigler 2005-06-01 14:35 Rev.: 30468


Calling TimeHashMaps::updateCacheSize(new_size) with new_size < 1
produces a no-op.

4 lines of code changed in 2 files:

damevski 2005-06-01 14:20 Rev.: 30467

Updated to mpi_defs.h for MPIPP_H

15 lines of code changed in 17 files:

damevski 2005-06-01 14:11

Updated to mpi_defs.h for MPIPP_H

8 lines of code changed in 16 files:

worthen 2005-06-01 13:40 Rev.: 30460

Make time refinement ratio only be read from the grid, and same ratio applicable to all levels.

11 lines of code changed in 5 files:

jas 2005-06-01 11:53 Rev.: 30459

Forward declare ConstraintSolver for gcc-4.

0 lines of code changed in 2 files:

May 2005 »

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