October 2005 Commit Log

Number of Commits:
275
Number of Active Developers:
20
jeroen 2005-10-31 23:13 Rev.: 32382

Bug fixes in dynamically compiled code

7 lines of code changed in 1 file:

kuzimmer 2005-10-31 22:46 Rev.: 32381

Made these work with HOB fields

31 lines of code changed in 4 files:

sachse 2005-10-31 19:14 Rev.: 32380

UnitElement added

46 lines of code changed in 2 files:

callahan 2005-10-31 16:57 Rev.: 32379

Fix get_neighbors, uses vector and not StackVector because there can be an arbitrary number of neighbors. This regressed during the basis tree and was previously fixed.

3 lines of code changed in 1 file:

kuzimmer 2005-10-31 16:53 Rev.: 32378

These modules appear to be working with the new HOB Field structure, please report any problems.

44 lines of code changed in 9 files:

jeroen 2005-10-31 16:22 Rev.: 32377

Bug fix so that Surface and Edge meshes load properly.

5 lines of code changed in 1 file:

mjc 2005-10-31 16:09 Rev.: 32376

4.0 compiler fix

1 lines of code changed in 1 file:

mdavis 2005-10-31 16:01 Rev.: 32375

Add ElemData to render edges correctly

92 lines of code changed in 1 file:

mjc 2005-10-31 15:58 Rev.: 32374

dyn comp fixes

7 lines of code changed in 1 file:

callahan 2005-10-31 15:37 Rev.: 32373

Fix TransformData* dynamic compilation for Vector and Tensor output types

6 lines of code changed in 3 files:

callahan 2005-10-31 15:37 Rev.: 32372

Fix Gradient module compilation for LatVolMesh types

3 lines of code changed in 1 file:

mdavis 2005-10-31 14:51 Rev.: 32371

Add ui_geometry variable to save X geometry of each modules open UI to network

24 lines of code changed in 3 files:

mdavis 2005-10-31 14:50 Rev.: 32370

Removed unused ElemData::node4()

1 lines of code changed in 1 file:

harman 2005-10-31 12:01 Rev.: 32366

Fall Cleanup:
- removed all conditional statements that contained if(d_Equil) or if(d_Rate).
We're now using the eq. form of the algorithm.

- changed switchDebug_EQ_RF_press -> switchDebug_equil_press

79 lines of code changed in 8 files:

jeroen 2005-10-31 11:42 Rev.: 32365

Added modules to this package to generate fielddata field new basis and new type without the need to do changefielddatatype and changefieldbasis (more memory efficiency). Added a module for merging fields, gatherfields in the core is broken and this one is defined differently from a GUI perspective. Added a module to compute field data bases on three input fields and a dynamic range of matrix inputs.

2102 lines of code changed in 40 files:

harman 2005-10-31 11:32 Rev.: 32364

set the values in the extra cells of imp_delP= 0.0. (So IRIX dbg RT will pass)

setMatrix now initializes imp_delP
scheduleSolve now modifies imp_delP

20 lines of code changed in 1 file:

harman 2005-10-31 11:14 Rev.: 32363

added iterator limits when solution is copied back, only when X is modified.

3 lines of code changed in 1 file:

mjc 2005-10-31 09:01 Rev.: 32362

order faces such that the face normal points out of the element

10 lines of code changed in 2 files:

sachse 2005-10-30 13:09 Rev.: 32361

upgrade

47 lines of code changed in 1 file:

mjc 2005-10-29 12:15 Rev.: 32360

make SingleTet match basis reference tet

5 lines of code changed in 1 file:

mjc 2005-10-29 12:12 Rev.: 32359

eliminate duplicate loops in edge/face approximation, fix HexVol edge rendering, add SingleHex standalone

156 lines of code changed in 15 files:

mjc 2005-10-28 17:16 Rev.: 32358

fix basis edge order mapping

1 lines of code changed in 1 file:

mjc 2005-10-28 17:01 Rev.: 32357

gcc 4 compile fixes

9 lines of code changed in 1 file:

mjc 2005-10-28 16:57 Rev.: 32356

fix dynamic compilation

356 lines of code changed in 3 files:

mdavis 2005-10-28 16:19 Rev.: 32354

Remove #if 0'd code

0 lines of code changed in 1 file:

mdavis 2005-10-28 16:18 Rev.: 32353

Remove get_nodes, get_edges, get_cells and use base class instead. Add ElemData struct to render correctly

150 lines of code changed in 1 file:

harman 2005-10-28 15:17 Rev.: 32352

scheduleComputeDelPressAndUpdatePress()
- added missing requires for press_equil_CCLabel

1 lines of code changed in 1 file:

callahan 2005-10-28 12:37 Rev.: 32351

Fix dynamic compilation of MaskedLattice module

10 lines of code changed in 3 files:

mjc 2005-10-28 09:51 Rev.: 32349

make approx methods map to the basis

6 lines of code changed in 1 file:

worthen 2005-10-27 20:02 Rev.: 32348

Add options to the RT to allow the user to turn off mem, comparision tests, or restart, and turn off restart for mpmf

0 lines of code changed in 10 files:

harman 2005-10-27 17:36 Rev.: 32346

updated docs to reflect recent code changes

5 lines of code changed in 2 files:

harman 2005-10-27 14:44 Rev.: 32344

Change to implicit pressure solve: (Stas's idea to cut down on numerical noise)
- New variable sum_imp_delP = sum( imp_delP)
- update the existing vel_FC with the gradient of imp_delP instead of
gradient of pressure
- added set_imp_delP_BC() routine
- press_CC is no longer computed in computeEquilPress.

430 lines of code changed in 9 files:

dav 2005-10-27 13:34 Rev.: 32341

Fix compiler warnings.

1 lines of code changed in 1 file:

dav 2005-10-27 13:33 Rev.: 32340

Organize #includes. Fix typos in comment... though I still don't know what it means. Ident #ifs.

14 lines of code changed in 1 file:

dav 2005-10-27 13:32 Rev.: 32339

consolidate the stl #includes

3 lines of code changed in 1 file:

worthen 2005-10-27 12:28 Rev.: 32338

fix typo

1 lines of code changed in 1 file:

worthen 2005-10-27 12:20 Rev.: 32337

Move FMPM to MPMF so we can keep the filename consistent with the sus algorithmgive group-write permissions to the short error log file

10 lines of code changed in 1 file:

worthen 2005-10-27 12:20 Rev.: 32336

Move FMPM to MPMF so we can keep the filename consistent with the sus algorithmgive group-write permissions to the short error log fileMPMF

10 lines of code changed in 2 files:

jas 2005-10-27 12:07 Rev.: 32335

Copy ReadAndDiscretize.cc to Crack.cc and start to reduce the functions
for reading in the cracks -- use instead the CrackGeometry classes.

2029 lines of code changed in 1 file:

jas 2005-10-27 11:23 Rev.: 32334

Fix memory leak for particle interpolator.

1 lines of code changed in 1 file:

mjc 2005-10-27 11:11 Rev.: 32333

formatting for readability

10 lines of code changed in 1 file:

mjc 2005-10-27 10:51 Rev.: 32332

fix broken edge/face hashing

37 lines of code changed in 1 file:

darbyb 2005-10-27 09:36 Rev.: 32331

Added new files with morphology filters (didn't add them yesterday)

1731 lines of code changed in 12 files:

mjc 2005-10-27 07:55 Rev.: 32330

gcc 4 compiler fix

3 lines of code changed in 1 file:

dav 2005-10-26 20:41 Rev.: 32329

Fix compiler warnings as I continue to track down SGI problem.

2 lines of code changed in 1 file:

dav 2005-10-26 20:41 Rev.: 32328

Fix (at least) sgi compile by fully qualifying Cell and Elem.

6 lines of code changed in 1 file:

dav 2005-10-26 19:46 Rev.: 32327

Remove more warnings as I try to figure out why the SGI build is broken.

1 lines of code changed in 1 file:

mjc 2005-10-26 17:28 Rev.: 32326

render each edge only once

22 lines of code changed in 1 file:

ayla 2005-10-26 17:14 Rev.: 32325

Complex in arg types should be passed by const reference.

0 lines of code changed in 2 files:

ayla 2005-10-26 17:13 Rev.: 32324

Complete TypeMap implementation.

400 lines of code changed in 2 files:

ayla 2005-10-26 17:12 Rev.: 32323

Add default property keys.

0 lines of code changed in 4 files:

ayla 2005-10-26 17:10 Rev.: 32322

Complex type in, out and inout args should be passed by reference, not by value. Clean up inconsistent namespace usage: every name from std shouldn't be dumped into the global namespace.

305 lines of code changed in 7 files:

mjc 2005-10-26 16:18 Rev.: 32321

remove debug prints

0 lines of code changed in 2 files:

sachse 2005-10-26 15:10 Rev.: 32320

bug fix

11 lines of code changed in 1 file:

harman 2005-10-26 14:22 Rev.: 32319

added virtual function getName() which returns the solver name.

32 lines of code changed in 16 files:

guilkey 2005-10-26 14:07 Rev.: 32318

Fix a small error for Irina.

0 lines of code changed in 2 files:

mdavis 2005-10-26 13:41 Rev.: 32317

Add ElemData to StructHexVolMesh to render edges and faces w/ correct coordinates. Also added StructHexVolMesh: get_coords, interpolate, and derivate.

123 lines of code changed in 1 file:

irina 2005-10-26 13:24 Rev.: 32316

implicit version of ViscoTransIsoHyper

1810 lines of code changed in 5 files:

darbyb 2005-10-26 13:14 Rev.: 32315

Added mathematical morphology filters: BinaryDilateImageFilter, BinaryErodeImageFilter (courtesy of Rob Van Uitert), and GrayscaleDilateImageFilter, and GrayscaleErodeImageFilter.

14 lines of code changed in 2 files:

mjc 2005-10-26 08:24 Rev.: 32314

fix incorrect cell_gradient

6 lines of code changed in 1 file:

mjc 2005-10-26 08:24 Rev.: 32313

remove unused variable x12

0 lines of code changed in 1 file:

darbyb 2005-10-25 19:22 Rev.: 32312

Fix to use mesh_type.

2 lines of code changed in 1 file:

sachse 2005-10-25 15:25 Rev.: 32311

important ; fixes

93 lines of code changed in 17 files:

mdavis 2005-10-25 14:54 Rev.: 32310

Set transform for StructHexVolMesh

1 lines of code changed in 1 file:

callahan 2005-10-25 14:31 Rev.: 32308

Fix MoveNodeToElem dynamic compilation

53 lines of code changed in 3 files:

callahan 2005-10-25 14:31 Rev.: 32307

Fix indentation

0 lines of code changed in 2 files:

callahan 2005-10-25 14:23 Rev.: 32306

Fix dynamic compilation for MoveElemToNode module

83 lines of code changed in 2 files:

sachse 2005-10-25 14:10 Rev.: 32305

woff

215 lines of code changed in 22 files:

dgroulx 2005-10-25 14:03 Rev.: 32303

Initialze a few variables so that the regression tester will run with
MALLOC_STRICT.

Bryan says it is his fault and will be performing seppuku in the SCI kitchen
tomarrow at noon. Bring cameras.

5 lines of code changed in 1 file:

callahan 2005-10-25 13:52 Rev.: 32302

Fix dynamic compilation of the ChangeFieldBasis module. Renamed algorithm to be ChangeFieldBasisAlgo.

48 lines of code changed in 3 files:

dgroulx 2005-10-25 13:13 Rev.: 32301

Added a -nsigs flag to the mpirun command on Linux to prevent signals from killing of LAM on the node where it failed.

1 lines of code changed in 1 file:

callahan 2005-10-25 13:12 Rev.: 32300

add typename needed for template compilation

1 lines of code changed in 1 file:

darbyb 2005-10-25 12:17 Rev.: 32299

Fix creation of Fields when incoming field is an ITK type though I think the calls to get_type_description(1)->get_name() won't return the correct thing yet.

34 lines of code changed in 1 file:

kuzimmer 2005-10-25 11:44 Rev.: 32298

Good news: dynamic compilation is working, can extract single level datasets. Bad news: multi-level datasets still broken.

273 lines of code changed in 3 files:

kuzimmer 2005-10-25 11:42 Rev.: 32297

change namespace back to Uintah

1 lines of code changed in 1 file:

mjc 2005-10-25 10:18 Rev.: 32296

fix warnings

3 lines of code changed in 1 file:

mjc 2005-10-25 10:00 Rev.: 32295

add required basis_type typedef

1 lines of code changed in 1 file:

jeroen 2005-10-25 09:48 Rev.: 32294

Bug fixes for dynamic field writers

31 lines of code changed in 1 file:

mjc 2005-10-25 09:42 Rev.: 32293

make stream rendering of indecies required interface, dont rely on operator<<

40 lines of code changed in 8 files:

sachse 2005-10-24 19:22 Rev.: 32292

bug fix

122 lines of code changed in 21 files:

dav 2005-10-24 18:58 Rev.: 32291

Added #include of Point.h... since Point is used in this file... This
allows SGI compile to complete... strange that the SGI compiler can't
figure out what a Point is and the other compilers can... either way,
it is a good idea to #include files that you use directly and not hope
that they are indirectly brought in for you.

1 lines of code changed in 1 file:

dav 2005-10-24 18:56 Rev.: 32290

Commented out an unused var.

0 lines of code changed in 2 files:

dav 2005-10-24 18:56 Rev.: 32289

Removed more extraneous ';'s.

7 lines of code changed in 3 files:

jas 2005-10-24 18:54 Rev.: 32288

Specify the correct location for the regressionFMPM.ups.

0 lines of code changed in 1 file:

dav 2005-10-24 18:53 Rev.: 32287

Added libs necessary for Mac build to link.

0 lines of code changed in 2 files:

dav 2005-10-24 18:53 Rev.: 32285


Indented #if stuff so I could read these files. # Included
sci_defs/hashmap_defs.h so that one of the basis functions file would
compile (before, the settings from configure were not being used...)

0 lines of code changed in 4 files:

dav 2005-10-24 18:51 Rev.: 32284

M Datatypes/CurveMesh.h

'void' functions can't 'return' something (according the CC)...

M Datatypes/SparseRowMatrix.cc

Turned off SGI compiler warnings.

M Datatypes/sub.mk

List all libs needed so Mac will link.

M Datatypes/cd_templates.cc

Indented #if stuff for readability. Mac and SGI don't like the '<Vector>'
on this line:

load_partials<Vector>(const vector<Vector> &grad, DenseMatrix &m)

So I removed it... compiles on sgi/linux/mac now.

M Datatypes/TetVolMesh.h

Combined sgi_stl_warnings off includes into one location.

32 lines of code changed in 7 files:

dav 2005-10-24 18:12 Rev.: 32283

Selectors and Operators now depend on Core/Basis.

0 lines of code changed in 4 files:

dav 2005-10-24 16:20 Rev.: 32282

Did some/all of the following to these files:

- Removed unnecessary ';'s after functions.
- Turned off SGI compiler warnings.
- Added/removed necessary/unnecessary #includes.

145 lines of code changed in 14 files:

sachse 2005-10-24 16:03

bug fix

4 lines of code changed in 3 files:

sachse 2005-10-24 15:33 Rev.: 32279

bug fix

41 lines of code changed in 1 file:

darbyb 2005-10-24 15:06 Rev.: 32278

Fix Insight package to work with new basis fields:


Packages/Insight/Dataflow/Modules/Converters/ImageToField.cc
Packages/Insight/Dataflow/Modules/Converters/FieldToImage.cc
------------------------------------------------------------
Fix converters to use new GenericFields with basis.
Fix ImageToField to use correct space information (center was
off).


Packages/Insight/Core/Datatypes/ITKLatVolField.h
Packages/Insight/Core/Datatypes/ITKImageField.h
Packages/Insight/Core/Datatypes/cd_templates_fields_0.cc
Packages/Insight/Core/Datatypes/cd_templates_fields_1.cc
------------------------------------------------------------
Update to use basis information. ITKLatVolsFields have a
HexTrilinearLgn basis and ITKImageFields have a QuadBilinearLgn
basis. All but one Insight networks function
(WatershedSegmentation.net crashes in a ChangeFieldBounds module).

To Do:
------
1) Fix calls to get_type_description when checking if a LatVol or
Image mesh (i.e. FieldSlicer).

2) Fix crash in WatershedSegmentation.net



555 lines of code changed in 6 files:

sachse 2005-10-24 14:54 Rev.: 32277

bug fix

3 lines of code changed in 1 file:

jas 2005-10-24 14:15 Rev.: 32276

Fracture MPM regression test.

10 lines of code changed in 1 file:

kuzimmer 2005-10-24 13:41 Rev.: 32275

use #include <sci_mpi.h> instead of #include <mpi.h>

0 lines of code changed in 2 files:

kuzimmer 2005-10-24 13:39 Rev.: 32274

Make sure the MPI_INCLUDE variable corresponds to --with-mpi= configure flag

2 lines of code changed in 1 file:

harman 2005-10-24 13:17 Rev.: 32273

Point the user upstream of compute equilibration pressure when max Iteration exception is thrown.

0 lines of code changed in 2 files:

sachse 2005-10-24 13:03 Rev.: 32272

upgrade

23 lines of code changed in 1 file:

sachse 2005-10-24 13:03

bug fixes

31 lines of code changed in 7 files:

sachse 2005-10-24 11:53 Rev.: 32268

bug fix

1 lines of code changed in 1 file:

jeroen 2005-10-24 11:42 Rev.: 32267

Added a 3rd string port to Matlab Module. Added FieldReader code for NoData/Constant/Linear basis functions. The field reader should read most of the in matlab defined meshes as a field. Updated the display window with information on the actual basis used for both field and mesh. Countless bug fixes for detecting which field type the user intended in its matlabfile. Addition of a framework for higher order defined meshes. Functions definitions for higher order elements are present but not yet implemented. The code is not yet GCC4 compliant, and may thus not compile on every system yet. The FieldWriter system is still largely unstested (hopefully coming soon, when I have time to adapt the code)

1032 lines of code changed in 8 files:

sachse 2005-10-24 11:38 Rev.: 32266

bug fixes

24 lines of code changed in 3 files:

sachse 2005-10-24 09:34 Rev.: 32265

bug fixes

23 lines of code changed in 3 files:

mjc 2005-10-24 09:24 Rev.: 32264

allow point clouds to render with color

1 lines of code changed in 1 file:

mjc 2005-10-24 08:06 Rev.: 32263

gcc 4 compile fix

2 lines of code changed in 3 files:

jas 2005-10-24 06:07 Rev.: 32262

Remove using std::abs for SGI build.

0 lines of code changed in 2 files:

mjc 2005-10-23 22:15 Rev.: 32261

partial cell_gradient fix

287 lines of code changed in 18 files:

kuzimmer 2005-10-23 21:19 Rev.: 32260

More corrections, still doesn't work

293 lines of code changed in 4 files:

sachse 2005-10-23 20:24 Rev.: 32259

upgrade

8 lines of code changed in 1 file:

sachse 2005-10-23 20:24 Rev.: 32258

bug fixes

51 lines of code changed in 3 files:

sachse 2005-10-23 13:52 Rev.: 32257

bug fix

1 lines of code changed in 1 file:

sachse 2005-10-22 16:26 Rev.: 32256

upgrade

56 lines of code changed in 1 file:

sachse 2005-10-22 16:26 Rev.: 32255

bug fixes

160 lines of code changed in 10 files:

sachse 2005-10-22 13:05 Rev.: 32254

bug fix

5 lines of code changed in 1 file:

jas 2005-10-22 06:29 Rev.: 32253

Use <math.h> instead of <cmath> for SGI compiler.

2 lines of code changed in 1 file:

jas 2005-10-21 21:54 Rev.: 32252

Remove the empty Fracture directory.
Add different crack structures: quad, curved quad, arc, elliptic, partial
elliptic, triangular, and null. Implement a general interface to reading
in cracks which will replace the functions in ReadAndDiscretizeCracks.cc.

1343 lines of code changed in 23 files:

sachse 2005-10-21 18:19 Rev.: 32251

upgrade for quadratic elements

145 lines of code changed in 1 file:

callahan 2005-10-21 16:46 Rev.: 32249

Fix ToStructured dynamic compilation

25 lines of code changed in 1 file:

callahan 2005-10-21 16:15 Rev.: 32248

Fix AttractNormals compilation

13 lines of code changed in 2 files:

callahan 2005-10-21 15:57 Rev.: 32247

Fix ChangeFieldDataType

27 lines of code changed in 3 files:

callahan 2005-10-21 15:23 Rev.: 32246

Fix dynamic compilation of UHexMC

0 lines of code changed in 2 files:

sachse 2005-10-21 15:20 Rev.: 32245

bug fix

1 lines of code changed in 1 file:

sachse 2005-10-21 15:19 Rev.: 32244

bug fixes

55 lines of code changed in 24 files:

callahan 2005-10-21 15:18 Rev.: 32243

Fix VectorMagnitude compilation

16 lines of code changed in 3 files:

callahan 2005-10-21 14:58 Rev.: 32242

Fix multiple Isosurfaces

2 lines of code changed in 1 file:

callahan 2005-10-21 14:41 Rev.: 32241

Fix ApplyMappingMatrix compilation for non-scalar fields

44 lines of code changed in 5 files:

callahan 2005-10-21 13:26 Rev.: 32239

Rearrange dynamic compilation includes again. Now they go data, basis, mesh, container, field, other. Point.h, Vector, etc are now included before the basis classes that depend upon them.

0 lines of code changed in 12 files:

callahan 2005-10-21 13:25 Rev.: 32238

Fixes for ManageFieldData compilation. Only partial fixes, still does not create the right basis.

61 lines of code changed in 2 files:

sachse 2005-10-21 12:28 Rev.: 32237

Bug fixes

103 lines of code changed in 4 files:

mjc 2005-10-21 10:55 Rev.: 32235

fix dynamic compilation

5 lines of code changed in 1 file:

callahan 2005-10-21 10:50 Rev.: 32234

Fix quad surface container type (compilation error)

0 lines of code changed in 2 files:

mjc 2005-10-21 10:32 Rev.: 32233

dyn comp fixes

8 lines of code changed in 3 files:

mjc 2005-10-21 10:23 Rev.: 32232

dyn compilation fixes

9 lines of code changed in 3 files:

mjc 2005-10-21 10:20 Rev.: 32231

return false when point is outside

17 lines of code changed in 1 file:

kuzimmer 2005-10-20 20:22 Rev.: 32230

Added dynamic compilation and changes for the new higher order basis field structure, NOTE: although the code compiles, it does NOT work. DO NOT UPDATE!

2505 lines of code changed in 35 files:

kuzimmer 2005-10-20 20:17 Rev.: 32229

commented out the uda2nrrd executable, it will need a lot of work to compile with the new field structure, I will change update the sub.mk when its fixed

0 lines of code changed in 2 files:

mjc 2005-10-20 17:40 Rev.: 32227

fix synchronization problem

1 lines of code changed in 1 file:

mjc 2005-10-20 17:37 Rev.: 32226

fix synchronization problem from rendering

1 lines of code changed in 2 files:

sachse 2005-10-20 16:35 Rev.: 32225

ordering fix

8 lines of code changed in 2 files:

bigler 2005-10-20 15:33 Rev.: 32224


Added double version of Sqrt, and moved the float version to the
bottom of the file.

0 lines of code changed in 2 files:

mdavis 2005-10-20 15:29 Rev.: 32223

Fix bad pointer to Exception::message() by making a copy on AssertionFailed constructor instead of pointing to local stack memory. Also make Module exception error reporting indented and easier to read.

14 lines of code changed in 5 files:

callahan 2005-10-20 11:45 Rev.: 32221

Fix includes for the various Visualization modules

2 lines of code changed in 1 file:

callahan 2005-10-20 11:42 Rev.: 32220

Fix includes for the various Field modules

33 lines of code changed in 9 files:

harman 2005-10-20 11:19 Rev.: 32219

removed cVolumeLabel

7 lines of code changed in 6 files:

callahan 2005-10-20 11:07 Rev.: 32218

Fix include typo

1 lines of code changed in 1 file:

sachse 2005-10-20 11:02 Rev.: 32217

Bug fix

2 lines of code changed in 1 file:

sachse 2005-10-20 10:55 Rev.: 32216

bug fix

6 lines of code changed in 1 file:

harman 2005-10-20 10:51 Rev.: 32215

deleted a requires for cVolume

0 lines of code changed in 1 file:

mjc 2005-10-20 10:43 Rev.: 32214

dyn compilation fix

0 lines of code changed in 2 files:

mjc 2005-10-20 10:38 Rev.: 32213

fix dyanamic compilation

1 lines of code changed in 1 file:

mjc 2005-10-20 10:37 Rev.: 32212

fix logic for copying data at constant basis elements

1 lines of code changed in 1 file:

mjc 2005-10-20 10:20 Rev.: 32211

fix dyn compilation, look for mesh name instead of field

6 lines of code changed in 1 file:

harman 2005-10-20 09:56 Rev.: 32210

user can now just replace the checkpoints directory

47 lines of code changed in 1 file:

mjc 2005-10-19 17:33 Rev.: 32207

dynamic compilation error fixes

39 lines of code changed in 5 files:

mjc 2005-10-19 15:00 Rev.: 32204

add required interface elem_type_description, make sure io calls basis io

70 lines of code changed in 14 files:

callahan 2005-10-19 14:32 Rev.: 32203

Use get_type_description in Pio instead of type_name

46 lines of code changed in 24 files:

mjc 2005-10-19 14:00 Rev.: 32202

fixes for Pio, TriSurf rendering

77 lines of code changed in 5 files:

mjc 2005-10-19 14:00 Rev.: 32201

use static array instead of switch

3 lines of code changed in 1 file:

worthen 2005-10-19 13:02 Rev.: 32199

Removed AMR tests until we are ready for them

0 lines of code changed in 2 files:

callahan 2005-10-19 12:11 Rev.: 32198

Remove unneeded type_name(0) call

35 lines of code changed in 35 files:

bigler 2005-10-19 11:30 Rev.: 32196


Core/Gui.cc
Core/Gui.h

Added variables and buttons and callbacks for setting min_child,
max_child and repeat_last of SelectableGroup.

All SG*CB functions now query the resultant value of the operation
and change the value of the GUI if it is different.

Removed a bunch of trigger junk from the SGNextItemCB function.

Core/SelectableGroup.cc
Core/SelectableGroup.h

Added internal_child, repeat_last, min_child, max_child variables
for more fine tuned contol on the animation. Also added accessor
functions to change them.

Updated all the animate, SetChild, and NextChild functions to take
into consideration the new controls.

0 lines of code changed in 8 files:

mjc 2005-10-19 09:47 Rev.: 32194

fix dynamic compile

0 lines of code changed in 2 files:

mjc 2005-10-19 09:41 Rev.: 32193

fix dynamic compile

53 lines of code changed in 2 files:

jeroen 2005-10-19 09:17 Rev.: 32192

Force modules to output that they are finished

43 lines of code changed in 17 files:

mjc 2005-10-19 08:34 Rev.: 32191

return Unstructure and ToStructured to the compile

41 lines of code changed in 6 files:

mjc 2005-10-19 07:59 Rev.: 32190

set default approx divisions to 1 in ShowField

1 lines of code changed in 1 file:

mjc 2005-10-18 18:39 Rev.: 32189

fix potential memory leak when loading old field files, move disable of backward compat mode to PropertyManager

7 lines of code changed in 3 files:

mjc 2005-10-18 16:46 Rev.: 32188

edge and face approximations, fix Centroids dyn compile, add debug prints in edge and face rendering

66 lines of code changed in 4 files:

mjc 2005-10-18 11:16 Rev.: 32187

more general access to raw pointer

1 lines of code changed in 1 file:

mjc 2005-10-18 10:54 Rev.: 32186

add space before > to fix template instantiation string

6 lines of code changed in 3 files:

mjc 2005-10-18 10:45 Rev.: 32185

fixes for TransformData{1,2,3}.net

93 lines of code changed in 13 files:

mjc 2005-10-17 16:41 Rev.: 32184

fix test for latvol

4 lines of code changed in 1 file:

mjc 2005-10-17 16:23 Rev.: 32183

fix for modules in src/nets/Modules/Volume/volume.net, note: crashes with same memory allocation error as pre basis merge build

33 lines of code changed in 4 files:

sachse 2005-10-17 16:08 Rev.: 32182

getnext2 implemented

21 lines of code changed in 1 file:

kzhang 2005-10-17 14:09 Rev.: 32181

changed F10 to F9 so gnome-terminal will not intercept it

0 lines of code changed in 4 files:

mjc 2005-10-17 13:55 Rev.: 32180

fix compile

4 lines of code changed in 1 file:

mjc 2005-10-17 13:44

synchronize for edges before calling get_edges

3 lines of code changed in 2 files:

sachse 2005-10-17 13:33 Rev.: 32177

TestBasis test also Gaussian

241 lines of code changed in 1 file:

sachse 2005-10-17 13:11 Rev.: 32176

bug fix

6 lines of code changed in 1 file:

mjc 2005-10-17 12:30 Rev.: 32174

compress dyn comp file names by removing lower case vowels, which avoids filenames > 256 which is not allowed

66 lines of code changed in 1 file:

jeroen 2005-10-17 11:49 Rev.: 32173

Code that does compile, it is untested as the SCIRun core currently does crash when run. The field readers and writers have been disabled until I have time to finish the code rewrite (currently 60% of the new code is there). I changed the error reporting mechanism, it can now run without a ProgressReporter, and generates more up to date error messages. For the Matlab to field converters: code for writing fields has been written, code for assessing whether a matlab matrix can be translated into a SCIRun field has been generated, only the dynamic templated code to create the field from the matrix itself is still under construction. The goal is to have a fully working and tested version by the end of the year.

6882 lines of code changed in 40 files:

sachse 2005-10-17 11:32 Rev.: 32172

bug fix

2 lines of code changed in 1 file:

sachse 2005-10-17 10:58 Rev.: 32171

bug fixes

2 lines of code changed in 1 file:

mjc 2005-10-17 10:44 Rev.: 32170

various fixes for modules in isocontour.net

37 lines of code changed in 5 files:

sachse 2005-10-17 10:11 Rev.: 32169

bug fixes

5 lines of code changed in 1 file:

sachse 2005-10-17 09:58 Rev.: 32168

bug fixes

2 lines of code changed in 1 file:

mjc 2005-10-17 09:52 Rev.: 32167

remove debug prints

0 lines of code changed in 1 file:

mjc 2005-10-17 09:49 Rev.: 32166

fix ElemData, and CompileInfo for ApplyMappingMatrix

49 lines of code changed in 7 files:

mjc 2005-10-16 14:12 Rev.: 32165

fix backward compatible Pio, for constant and nodata fields as well as linear

1573 lines of code changed in 22 files:

sachse 2005-10-15 17:51 Rev.: 32164

bug fixes

73 lines of code changed in 1 file:

sachse 2005-10-15 17:29 Rev.: 32163

bug fixes

22 lines of code changed in 3 files:

sachse 2005-10-15 16:51 Rev.: 32162

bug fixes

5 lines of code changed in 1 file:

sachse 2005-10-15 15:00 Rev.: 32161

Extend for testing of CurveMesh

16 lines of code changed in 1 file:

sachse 2005-10-15 14:59 Rev.: 32160

Bug fixes for 1d search

7 lines of code changed in 2 files:

mjc 2005-10-15 11:11 Rev.: 32159

fix allocation crashes

2 lines of code changed in 1 file:

sachse 2005-10-14 19:11 Rev.: 32158

Test program for basis classes and new meshes/fields

187 lines of code changed in 2 files:

sachse 2005-10-14 19:00 Rev.: 32157

bug fixes

4 lines of code changed in 4 files:

bigler 2005-10-14 17:14 Rev.: 32155


Per Steve's suggestion do the cast after the divide so the compiler
will do the division in double precision and then truncate the value.

Also use parenthesis to encourage the compiler to precompute the const
values at compile time.

4 lines of code changed in 1 file:

bigler 2005-10-14 16:56 Rev.: 32154

Added float versions of Tan and Atan. Modified how casts were done for DtoR and RtoD.

12 lines of code changed in 1 file:

mjc 2005-10-14 16:56 Rev.: 32153

propogate required mesh interface, approx methods need to be verified

852 lines of code changed in 11 files:

ayla 2005-10-14 11:51 Rev.: 32152

Documentation update

21 lines of code changed in 1 file:

dav 2005-10-14 10:45 Rev.: 32151

Define RETURN(s)

0 lines of code changed in 2 files:

ayla 2005-10-14 09:50 Rev.: 32150

Changed a couple of mutex lock/unlocks to Guard. If port arg for addProvidesPort is null, throw exception.

0 lines of code changed in 4 files:

ayla 2005-10-14 09:46 Rev.: 32149

Documentation update.

0 lines of code changed in 2 files:

mjc 2005-10-14 09:08 Rev.: 32148

fix incorrect assert in value for nodes

1 lines of code changed in 1 file:

mjc 2005-10-14 08:40

fix compile, PI->M_PI

5 lines of code changed in 2 files:

mjc 2005-10-14 08:12 Rev.: 32145

fix compile

0 lines of code changed in 2 files:

mjc 2005-10-14 08:11 Rev.: 32144

fix broken compile

16 lines of code changed in 1 file:

mjc 2005-10-14 08:07 Rev.: 32143

compile fix, remove unused method, remove duplicated functionality

15 lines of code changed in 2 files:

mjc 2005-10-14 07:50 Rev.: 32142

fix compile, revert RETURN macro. sci_comp_warn_fixes does not define RETURN ...

2 lines of code changed in 1 file:

sachse 2005-10-13 18:45 Rev.: 32141

fixed Locate

5 lines of code changed in 1 file:

dav 2005-10-13 16:25 Rev.: 32139

Added full list of libraries.

33 lines of code changed in 5 files:

dav 2005-10-13 16:25 Rev.: 32138

removed tri_area and distance2 as they appear to come from somewhere else...(and they belong elsewhere)

0 lines of code changed in 1 file:

dav 2005-10-13 16:25 Rev.: 32137


Mostly cosmetics: (indent, remove compiler warnings, etc)

General examples of changes are:

- replaced while(1) with for(;;)
(I like while(1), but this gets rid of the compiler warning...)
- Used sci_comp_warn_fixes.h for RETURN/BREAK after throws/asserts.
- Removed 'const' on return type as it is meaningless.
- removed unnecessary ';' after some functions.
- turned off SGI warning about casting

Core/Basis/Locate.cc

- Added NOT_FINISHED()

87 lines of code changed in 14 files:

dav 2005-10-13 16:14 Rev.: 32136

Fixed compiler warning. Added in error statement for bad user input.

0 lines of code changed in 2 files:

mjc 2005-10-13 15:37 Rev.: 32135

fix missed M_PI

1 lines of code changed in 1 file:

sachse 2005-10-13 15:30 Rev.: 32134

bug fixes

24 lines of code changed in 2 files:

guilkey 2005-10-13 15:30 Rev.: 32133

Slight change to the way the CC heat rate is projected to the nodes. I made
this change for the site visit runs, but didn't get around to checking them in.
This avoids a potential error at patch boundaries.

83 lines of code changed in 2 files:

dav 2005-10-13 14:28 Rev.: 32132

Indented

0 lines of code changed in 4 files:

bigler 2005-10-13 14:13 Rev.: 32131


Reduced some warnings by commenting out unused function parameters and
using size_t instead of int (not everywhere mind you).

0 lines of code changed in 4 files:

bigler 2005-10-13 14:11 Rev.: 32130


Changed "bool exiting" and "void Thread_run(Thread* t)" to static.

printf formatting to quiet warning messages.

For AtomicCounter::operator int() for __ia64 code explictly cast
priv_->amo_val to int.

4 lines of code changed in 1 file:

bigler 2005-10-13 14:09 Rev.: 32129


MiscMath.h

Added float version of Abs and Clamp.

Trig.h

Changed PI to M_PI.

Added double version of Atan2.

Added float versions of Sin, Cos, Sqrt, Atan2, Acos, DtoR, and RtoD.

60 lines of code changed in 2 files:

guilkey 2005-10-13 13:19 Rev.: 32128

If a negative J is encountered, no longer throw an exception. Now, emit a
warning, report the particle's mass, and reset the deformation gradient to
the value from the previous timestep. This was required for the SV2005 sim.
I suspect that infinitesimal particles are the source of the problem.

5 lines of code changed in 1 file:

sachse 2005-10-13 12:58 Rev.: 32127

Bug fixes

8 lines of code changed in 2 files:

sachse 2005-10-13 12:08 Rev.: 32126

Yet another set of bug fixes

18 lines of code changed in 6 files:

mjc 2005-10-13 09:29 Rev.: 32125

Isosurface include and field constructor fixes

48 lines of code changed in 13 files:

mjc 2005-10-13 08:32 Rev.: 32124

reconnect moved functionality, coding standard changes

172 lines of code changed in 25 files:

mjc 2005-10-12 19:39 Rev.: 32123

Add get_weights back in, make basis class interpolate use get_weights, fix dyn comp for streamlines

1801 lines of code changed in 39 files:

sachse 2005-10-12 18:46 Rev.: 32122

bug fixes locate

2 lines of code changed in 2 files:

sachse 2005-10-12 18:39 Rev.: 32121

bug fixes

18 lines of code changed in 6 files:

sachse 2005-10-12 18:17 Rev.: 32120

Unitelements done

10 lines of code changed in 3 files:

sachse 2005-10-12 18:08 Rev.: 32119

Unitelem 4

401 lines of code changed in 20 files:

sachse 2005-10-12 16:56 Rev.: 32117

UnitElem Phase III

216 lines of code changed in 13 files:

sachse 2005-10-12 16:12 Rev.: 32116

UnitElements part 2

1 lines of code changed in 1 file:

sachse 2005-10-12 16:11 Rev.: 32115

UnitElements part 1

243 lines of code changed in 6 files:

mdavis 2005-10-12 14:16 Rev.: 32114

Fix hash_edge to build PEdge::cells_ vector properly, thus fixing get_cells(Cell::array_type, Node::index_type) for Jason S.

1 lines of code changed in 1 file:

jas 2005-10-12 10:47 Rev.: 32112

Remove #defines for projectingCCHeatSourcesToNodes and DO_MECHANICS.
These defines are replaced with input file flags.
Default is to turn OFF projectCCHeatSourcesToNodes.
Default is to turn ON DO_MECHANICS.

37 lines of code changed in 2 files:

mjc 2005-10-11 17:48 Rev.: 32111

dyn comp fix

2 lines of code changed in 1 file:

callahan 2005-10-11 14:45 Rev.: 32110

Remove circular Datatype dependency, inherit from Persistent instead

4 lines of code changed in 9 files:

mjc 2005-10-11 14:29 Rev.: 32109

keep separate include lists in CompileInfo, Basis, Mesh, Fields tagged to identify which list they belong in

437 lines of code changed in 49 files:

sachse 2005-10-11 11:44 Rev.: 32107

bug fixes

8 lines of code changed in 2 files:

mjc 2005-10-11 10:03 Rev.: 32106

remove obsolete meshes

0 lines of code changed in 2 files:

mjc 2005-10-11 09:01 Rev.: 32105

do not add duplicate includes to the compile info list, preserve the original insertion order

6 lines of code changed in 1 file:

ayla 2005-10-10 19:44

Replaced some lock/unlock calls with Guards. Code cleanup.

140 lines of code changed in 10 files:

jeroen 2005-10-10 17:50 Rev.: 32102

Field and mesh were not being coupled, fixed that bug

1 lines of code changed in 1 file:

jeroen 2005-10-10 17:46 Rev.: 32101

Fixed compile errors on this one, will be testing whether it works in the new H_O_B tree when I have a working version

26 lines of code changed in 1 file:

ayla 2005-10-10 17:45 Rev.: 32100

Replaced a couple of lock/unlock calls with a Guard.

54 lines of code changed in 2 files:

kuzimmer 2005-10-10 17:26 Rev.: 32099

remove un-needed #include

0 lines of code changed in 1 file:

bigler 2005-10-10 17:24 Rev.: 32098


Core/GridSpheresDpy.cc
Core/GridSpheresDpy.h

Added ability to attach GridSpheres after you started running. Not
currently tested, but the old functionality still works.

You can set the varnames without having to set them in the children
GridSpheres.

Core/SelectableGroup.cc
Core/SelectableGroup.h

Frame changes from the GUI now cause changes during animate. This
creates clean transitions while rendering. I added a gui_child that
gets changed by the GUI. During the animate call gui_child is
propagated to child appropiatly.

Moved SetChild and nextChild to the .cc file.

StandAlone/scenes/VolumeVisMod.cc

Attach the PlandDpy display, so that it will disappear when rtrt
exits.

StandAlone/scenes/spherefile.cc

Added support for varnames to be passed in from the cammand line and
given to GridSpheresDpy.

StandAlone/scenes/tstdemo.cc

If you give two file names that are the same, you share the data
that has already been loaded. This is kept track of using
std::map's.

StandAlone/scenes/uintahparticle2.cc

If the file for writing the data out to disk could not be opened the
function returns. The file is also closed after done writing.

All the variables are now printing on the commandline.

313 lines of code changed in 14 files:

yguo 2005-10-10 16:24 Rev.: 32097

Modify output the format of fracture parameters.

1 lines of code changed in 1 file:

yguo 2005-10-10 16:22 Rev.: 32096

Planar triangular cracks were generated into curved triangular cracks.

204 lines of code changed in 1 file:

mjc 2005-10-10 16:02 Rev.: 32095

update Mesh code with changes made in removed *Mesh.cc files

260 lines of code changed in 10 files:

yguo 2005-10-10 16:01 Rev.: 32094

Planar triangular cracks was generated into curved triangular cracks.

7 lines of code changed in 1 file:

mdavis 2005-10-10 14:28 Rev.: 32093

Fixes for Mac OSX after H_O_Basis merge. Now compiles and runs on OSX 10.4.

Disabled MacForceLoad in Core/Init/init.cc until needed as the static constructors that were being called by this function no longer exist because the derived Field types went away.

Added in unsigned int operator for MaskedLatVolMesh::NodeIter.

Changed #include <values.h> to #include <float.h> for OSX compatibility.

Added in Core/Basis to various sub.mk files in BioPSE and Teem Packages.

44 lines of code changed in 21 files:

mjc 2005-10-10 09:59 Rev.: 32092

initial commit of H_O_Basis branch merge

30817 lines of code changed in 379 files:

jeroen 2005-10-09 22:59 Rev.: 32090

added copy function to bundle class

9 lines of code changed in 2 files:

jeroen 2005-10-09 22:47 Rev.: 32089

Fixed bug in splitting fields by element data

34 lines of code changed in 5 files:

jeroen 2005-10-09 22:46 Rev.: 32088

Fixed the loading of m files in the GUI, improved handling of fields with constant data

1335 lines of code changed in 4 files:

jeroen 2005-10-09 13:01 Rev.: 32084

Added a few modules which will help for construction of cellular models.

1298 lines of code changed in 23 files:

callahan 2005-10-07 18:02

Merge the 1.24.2 changes into the trunk

648 lines of code changed in 61 files:

jfsheph 2005-10-07 16:29 Rev.: 32068

backing up some work before the changes on Monday...

42 lines of code changed in 1 file:

mdavis 2005-10-07 14:55 Rev.: 32066

Implement unsigned int HexVolMesh::get_cells(Cell::array_type &, Node::index_type) const

36 lines of code changed in 2 files:

callahan 2005-10-07 13:59 Rev.: 32065

Fix compilation of IsoClip.h

1 lines of code changed in 1 file:

jfsheph 2005-10-07 13:46 Rev.: 32064

backing up some work before the changes on Monday...

372 lines of code changed in 1 file:

jeroen 2005-10-06 23:14 Rev.: 32063

Fixed bug for loading m-files into command window, now window gets cleaned properly before loading new m-file.

1 lines of code changed in 1 file:

jeroen 2005-10-06 23:13 Rev.: 32062

Added reader/writer for text into strings. Added support for attaching properties to fields. Added code for distance maps.

3957 lines of code changed in 32 files:

mdavis 2005-10-06 16:25 Rev.: 32061

Fix volume rendering on OSX

56 lines of code changed in 1 file:

kuzimmer 2005-10-06 12:26 Rev.: 32060

Allow shader programs to be read from files. Makes debugging easier.

47 lines of code changed in 3 files:

jeroen 2005-10-05 21:29 Rev.: 32057

Added modules to compute data of field based on a user supplied function and matrices as parameters. Added a new engine to do Tensor/Vector/Scalar math with data in matrices and data in fields, and as well element properties. Added modules to move data from element to node and vice versa with different functions not limitted to the standard interpolation function. Add functionality to create conductivity fields from tissue indexed fields. Now multiple sources can be combined like tissue class, tensor data and other data available. Made modules more scriptable, added ports to supply user function, for computing new data (to control functions being applied in a central source). Added distance map functionality (needs to be upgraded to HO elements). Combined function for computing scalar, vector and tensor arrays into one module called ComputeDataArray. Made a start to put all fields computations into one library that can be used to create complicated Field operations. Added framework for signeddistance maps, which needs to be extended.

9678 lines of code changed in 86 files:

jeroen 2005-10-05 16:09 Rev.: 32056

Added support for strings in matlab bundled variables. Updated the GUI to show a red bar instead of a white bar. Added extra protection against not existing filenames/pathnames. Removed support for Masked fields as this will not be supported by the HO version

802 lines of code changed in 13 files:

callahan 2005-10-05 12:49 Rev.: 32055

Fix compilation error on gcc 3.4 and up.

1 lines of code changed in 1 file:

allen 2005-10-04 18:19 Rev.: 32053

added the ability to use the seed value as the output value

183 lines of code changed in 4 files:

mdavis 2005-10-03 18:53 Rev.: 32051

Fix bug causing VolumeVisualizer to not recognize when a cmap2 is connected

1 lines of code changed in 1 file:

jeroen 2005-10-03 14:47 Rev.: 32050

Added string ports in Matlab engine, for for instance specifying filenames. Capped the display buffer to 1000 lines

391 lines of code changed in 3 files:

jeroen 2005-10-03 10:46 Rev.: 32049

Bug fix: Could not create a catagory FieldsCreate in packages as it was converted to Fields, this is confusing, hence restricting hardware wired renaming only to the SCIRun package

2 lines of code changed in 1 file:

September 2005 »

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