November 2005 Commit Log

Number of Commits:
268
Number of Active Developers:
18
callahan 2005-11-30 18:04 Rev.: 32681

Use NrrdData Nrrd constructor, clean up all the nrrdNew() memory leaks associated with old usage

85 lines of code changed in 127 files:

callahan 2005-11-30 18:03 Rev.: 32680

Add a new NrrdData constructor that takes a Nrrd as the arguement.

0 lines of code changed in 4 files:

borodai 2005-11-30 17:48 Rev.: 32679

Noise removal

7 lines of code changed in 5 files:

callahan 2005-11-30 17:17

Minor cleanups

8 lines of code changed in 2 files:

ayla 2005-11-30 16:49 Rev.: 32676

ploader does not need to check for GUI.

0 lines of code changed in 2 files:

guilkey 2005-11-30 16:26 Rev.: 32675

De-yukkified quite a bit.

100 lines of code changed in 1 file:

jas 2005-11-30 15:48 Rev.: 32674

Fix compile problem on purple.

0 lines of code changed in 2 files:

callahan 2005-11-30 15:27 Rev.: 32673

Fix PropertyManager crash bugs/lockups. Use a PropertyManager lock, synchronize source in copy_properties and == tests, fix bad clear_transients function

0 lines of code changed in 4 files:

borodai 2005-11-30 15:26 Rev.: 32672

Bug fix

0 lines of code changed in 2 files:

borodai 2005-11-30 15:02 Rev.: 32671

l2up seems to work. Flux limiters do not, do not
even try.

745 lines of code changed in 66 files:

harman 2005-11-30 13:51 Rev.: 32670

Added ability to normalize the residual before checking for convergence,
by default this normalization factor = 1.0

CGSolver.cc
- nuked all the #if OPT sections

67 lines of code changed in 6 files:

jas 2005-11-30 13:03 Rev.: 32669

Bug fix for petsc library determination.

0 lines of code changed in 2 files:

callahan 2005-11-30 12:07 Rev.: 32668

Get rid of redundant get_type calls, use shared string_to_nrrd_type

46 lines of code changed in 13 files:

callahan 2005-11-30 12:06 Rev.: 32667

Add a string_to_nrrd_type function

34 lines of code changed in 2 files:

jeroen 2005-11-30 08:45

Additional options for scripting

16 lines of code changed in 3 files:

jeroen 2005-11-29 21:37 Rev.: 32664

fixes to load image and latvol data

0 lines of code changed in 4 files:

jas 2005-11-29 21:17 Rev.: 32663

Fixes for gcc-3.4 and gcc-4.0. Compiler was confused on which pow to use.

2 lines of code changed in 1 file:

callahan 2005-11-29 18:52 Rev.: 32662

Use send_and_detach instead of just send on the OPorts for better caching behavior. Remove empty tcl_command functions.

90 lines of code changed in 44 files:

callahan 2005-11-29 18:29 Rev.: 32661

Use send_and_detach instead of just send on the OPorts for better caching behavior. Remove commented out code.

47 lines of code changed in 25 files:

callahan 2005-11-29 18:17 Rev.: 32660

Use send_and_detach instead of just send on the OPorts for better caching behavior. Remove empty tcl_command functions

12 lines of code changed in 5 files:

callahan 2005-11-29 18:10

Use send_and_detach instead of just send on the OPorts for better caching behavior. Remove empty tcl_command functions

31 lines of code changed in 11 files:

callahan 2005-11-29 17:41 Rev.: 32657

Fix mac compilation, bad default arguement

1 lines of code changed in 1 file:

callahan 2005-11-29 17:33 Rev.: 32656

Use send_and_detach instead of just send on the OPorts for better caching behavior.

119 lines of code changed in 9 files:

mdavis 2005-11-29 17:24 Rev.: 32655

Change input and output ports to Bundle to allow arbitrary numbers of inputs/outputs and their datatypes

5 lines of code changed in 1 file:

mdavis 2005-11-29 16:54 Rev.: 32654

ReFactor Painter tools into seperate virtual classes that inherit from Painter::PainterTool to allow rapid development of future tools. Move Color Lookup Table functionality into OpenGL

1831 lines of code changed in 7 files:

sachse 2005-11-29 15:35 Rev.: 32652

bug fix

0 lines of code changed in 2 files:

callahan 2005-11-29 15:20 Rev.: 32651

Use send_and_detach instead of just send on the OPorts for better caching behavior.

8 lines of code changed in 11 files:

callahan 2005-11-29 15:14 Rev.: 32650

Use send_and_detach instead of just send on the OPorts for better caching behavior.

90 lines of code changed in 29 files:

callahan 2005-11-29 14:56 Rev.: 32649

Use send_and_detach, remove gratuitous dynamic_cast

0 lines of code changed in 12 files:

callahan 2005-11-29 13:08 Rev.: 32648

Use send_and_detach instead of just send on the OPorts. Better caching behavior.

109 lines of code changed in 119 files:

callahan 2005-11-29 12:43

Remove empty tcl_command functions

1 lines of code changed in 14 files:

callahan 2005-11-29 12:35

Remove empty tcl_command functions

0 lines of code changed in 30 files:

callahan 2005-11-29 12:24 Rev.: 32643

General fix for PropertyManager freezing on port send. Make it apply to all applicable PropertyManager objects

19 lines of code changed in 3 files:

callahan 2005-11-29 11:58 Rev.: 32642

Fix typo in last checkin

3 lines of code changed in 1 file:

callahan 2005-11-29 11:57 Rev.: 32641

Add a send_and_dereference function. This nulls out the handle at the time of send, thus fixing the race condition where the other end gets and then detaches the handle before we dereference it (even though we are done with it).

50 lines of code changed in 3 files:

jas 2005-11-29 09:57 Rev.: 32640

Compile with PETSC library if it is installed.

5 lines of code changed in 1 file:

jeroen 2005-11-28 22:40 Rev.: 32639

To get the insight package to compile on OSX I needed to reshuffle some of the includes and predefine classes which could otherwise not be found by the compiler and fix some sub.mk files as they did not include Core/Basis. With these fixes I was able to compile the Insight Package fully on OSX 10.4. I have not had the chance to test the modules. With these fixes done, I hope to start on the bridge between the matlabinterface and the insight package, as the matlab engine currently does not recognise the insight field types. --Jeroen

174 lines of code changed in 15 files:

sachse 2005-11-28 19:01 Rev.: 32638

Include file for including all basis classes

57 lines of code changed in 1 file:

harman 2005-11-28 18:53 Rev.: 32637

Stair step approach for the absorbing solid's radiative flux area.
- Use the geometry piece from the input file to define the inside of the solid.
- This assumes that the absorbing solid doesn't move.
- Not working but I need to get it commited before it grows stale.

0 lines of code changed in 4 files:

jas 2005-11-28 13:33 Rev.: 32636

Add missing include file so Uintah viz modules will compile with gcc-3.4 and
gcc-4.0.

0 lines of code changed in 2 files:

ayla 2005-11-28 13:23 Rev.: 32635

Rewriting Java language support for Babel, Ptolemy package, first pass.

601 lines of code changed in 2 files:

jas 2005-11-28 11:25 Rev.: 32634

Add tests to match regular RT tests.

3 lines of code changed in 1 file:

jas 2005-11-28 10:18 Rev.: 32633

Add restart comparison checks.

55 lines of code changed in 1 file:

jeroen 2005-11-26 20:31 Rev.: 32632

Fixes to incorporate the changes in ordering of the include files in the dynamic compiled files.

8 lines of code changed in 1 file:

jeroen 2005-11-26 20:30 Rev.: 32631

Fixes to incorporate the changes in ordering of the include files in the dynamic compiled files. Apparently the order of include files does matter now.

704 lines of code changed in 32 files:

sachse 2005-11-25 13:33 Rev.: 32630

bug fixes, dofs() added

63 lines of code changed in 23 files:

sachse 2005-11-25 13:33 Rev.: 32629

bug fixes

25 lines of code changed in 16 files:

jas 2005-11-23 18:08

Add #include <numeric>

0 lines of code changed in 4 files:

guilkey 2005-11-23 17:01 Rev.: 32625

Made some improvements to the IdealGas model, in particular with respect
to computing P*dV work done on the particles.

6 lines of code changed in 1 file:

harman 2005-11-23 16:20 Rev.: 32624

Fall cleanup:
changed heatFlux_CC to heatRate_CC
pInternalHeatRate to pdTdt
Jim & Todd

142 lines of code changed in 48 files:

jas 2005-11-23 14:50 Rev.: 32623

Added numeric include file.

1 lines of code changed in 1 file:

callahan 2005-11-23 14:47 Rev.: 32622

Compilation fixes

5 lines of code changed in 2 files:

harman 2005-11-23 13:41 Rev.: 32620

Turned off printing the matrix, rhs and X to a file every timestep.

3 lines of code changed in 1 file:

harman 2005-11-23 13:21 Rev.: 32619

fixed a label spelling error

15 lines of code changed in 6 files:

sachse 2005-11-23 12:27 Rev.: 32618

bug fix

1 lines of code changed in 1 file:

sachse 2005-11-23 12:25 Rev.: 32617

get_derivate_weights added

1204 lines of code changed in 21 files:

jeroen 2005-11-23 09:45 Rev.: 32616

Bug fix: Nodata's type description thinks it was templated twice

1 lines of code changed in 1 file:

sachse 2005-11-22 18:22 Rev.: 32615

bug fix

6 lines of code changed in 1 file:

callahan 2005-11-22 17:28 Rev.: 32614

Flush io on regression timeout.

0 lines of code changed in 2 files:

callahan 2005-11-22 17:09 Rev.: 32613

minor cleanup

0 lines of code changed in 2 files:

sachse 2005-11-22 17:02 Rev.: 32612

bug fixes

8 lines of code changed in 1 file:

sachse 2005-11-22 16:59 Rev.: 32611

bug fix

3 lines of code changed in 1 file:

callahan 2005-11-22 16:49 Rev.: 32610

Make modules aware of port caching.

5 lines of code changed in 1 file:

jeroen 2005-11-22 16:20 Rev.: 32609

Updates for the CardioWave Package to work with HOB and a cleanup of the Package. A lot of functionality has been shifted to the more general package called ModelCreation

0 lines of code changed in 64 files:

callahan 2005-11-22 15:28 Rev.: 32608

Make modules aware of port caching.

1 lines of code changed in 1 file:

callahan 2005-11-22 15:24 Rev.: 32607

Minor formatting cleanups

30 lines of code changed in 1 file:

callahan 2005-11-22 15:19 Rev.: 32606

Remove debugging print

0 lines of code changed in 1 file:

callahan 2005-11-22 13:10 Rev.: 32605

Add return statements where needed

5 lines of code changed in 2 files:

jeroen 2005-11-22 12:51 Rev.: 32604

Bug fixes

32 lines of code changed in 2 files:

jeroen 2005-11-22 12:50 Rev.: 32603

Added a simple textfile writer (no headers just rows and columns of data)

43 lines of code changed in 3 files:

jeroen 2005-11-22 12:49 Rev.: 32602

Changed abs to fabs

0 lines of code changed in 2 files:

sachse 2005-11-22 10:45 Rev.: 32601

name change

37 lines of code changed in 1 file:

jeroen 2005-11-22 10:45 Rev.: 32600

bug fixes

2 lines of code changed in 1 file:

sachse 2005-11-22 10:44 Rev.: 32599

upgrade

979 lines of code changed in 17 files:

sachse 2005-11-22 10:44 Rev.: 32598

name change

5 lines of code changed in 5 files:

jeroen 2005-11-22 10:43 Rev.: 32597

fixed memory leaks in rewrite of matlabconverter

0 lines of code changed in 2 files:

jeroen 2005-11-21 14:25 Rev.: 32593

Updates to get_type_description calls were incorrect: added propername space identifiers

6 lines of code changed in 1 file:

jeroen 2005-11-21 10:18 Rev.: 32592

Fixed includes as SCIRun did not compile on OSX

0 lines of code changed in 2 files:

jeroen 2005-11-21 09:44 Rev.: 32591

MatlabEngine functionality was disabled for MACs in 1.24.2, however the trunk version worked fine, removing code that disables matlabengine

0 lines of code changed in 1 file:

ayla 2005-11-20 14:19 Rev.: 32590

Correct identifier for component instance properties.

0 lines of code changed in 2 files:

ayla 2005-11-18 19:06 Rev.: 32589

Let ComponentInstance set standard component properties.

74 lines of code changed in 5 files:

ayla 2005-11-18 19:05 Rev.: 32588

Changes to internal component creation and deletion.

262 lines of code changed in 15 files:

ayla 2005-11-18 18:16 Rev.: 32587

Set default standard component properties in ComponentInstance.

2 lines of code changed in 1 file:

ayla 2005-11-18 17:52 Rev.: 32586

Make service type visible to subclasses.

22 lines of code changed in 1 file:

guilkey 2005-11-18 15:26 Rev.: 32585

Don't puke if gravity is on.

0 lines of code changed in 2 files:

sachse 2005-11-18 11:16 Rev.: 32582

function number_of_mesh_vertices() added to ...UnitElements

64 lines of code changed in 15 files:

callahan 2005-11-17 18:57 Rev.: 32581

Make modules aware of port caching. Disable internal caching if port isn't caching. Minor cleanups.

126 lines of code changed in 33 files:

callahan 2005-11-17 18:06 Rev.: 32580

Make modules aware of port caching. Disable internal caching if port isn't caching.

13 lines of code changed in 3 files:

callahan 2005-11-17 18:05 Rev.: 32579

Minor cleanups

14 lines of code changed in 2 files:

callahan 2005-11-17 17:50 Rev.: 32578

Minor cleanups

6 lines of code changed in 1 file:

callahan 2005-11-17 17:42 Rev.: 32577

Fix minor memory leak in Coregister module execute. Clean up Coregister code, use vector instead of Array1, pass vectors by reference instead of copy

150 lines of code changed in 5 files:

guilkey 2005-11-17 17:24 Rev.: 32576

More correctly allocate memory in MatCreateMPIAIJ. This eliminates the
thousands of mallocs that we were doing in parallel calculations. This
makes a dramatic improvement in performance that seems to be more dramatic
for larger problems and processor counts.

0 lines of code changed in 2 files:

callahan 2005-11-17 15:47 Rev.: 32575

Add function to check port caching by port name

10 lines of code changed in 2 files:

callahan 2005-11-17 15:46 Rev.: 32574

Remove get_cache. Use have_data instead, it's 'more' thread safe. If there's data then it cached, otherwise not. If you check the cache variable you don't know what it was set at when the data went through

0 lines of code changed in 1 file:

callahan 2005-11-17 15:45 Rev.: 32573

Make modules aware of port caching. Disable caching if port isn't caching.

18 lines of code changed in 5 files:

ayla 2005-11-17 15:45 Rev.: 32572

Restoring lost (and necessary) Babel configure options and version check from revision 31612.

102 lines of code changed in 2 files:

kuzimmer 2005-11-17 11:14 Rev.: 32570

remove CuttingPlane.cc

0 lines of code changed in 2 files:

kuzimmer 2005-11-17 11:12 Rev.: 32569

remove CuttingPlane.tcl

0 lines of code changed in 2 files:

callahan 2005-11-16 17:09 Rev.: 32568

Remove get_oports function, oports are never dynamic. Also implement dangling getIPorts function

5 lines of code changed in 2 files:

callahan 2005-11-16 14:24 Rev.: 32567

Fix net warnings

0 lines of code changed in 4 files:

mdavis 2005-11-16 12:26 Rev.: 32566

Add Teem lib to fix OSX build

2 lines of code changed in 1 file:

callahan 2005-11-16 12:05 Rev.: 32565

Add get_cache function calls so we can test for port caching

4 lines of code changed in 1 file:

callahan 2005-11-16 12:05 Rev.: 32564

Fix locate again, compute faces before grid

2 lines of code changed in 1 file:

mjc 2005-11-16 10:19 Rev.: 32563

dont render edges with vector -> color in a constant field unless we are a 1 dimensional mesh

7 lines of code changed in 1 file:

guilkey 2005-11-15 19:44 Rev.: 32562

Can now use ForceBCs on particles. Also, restored the conditional on
restarting due to nan residual (for now).

7 lines of code changed in 1 file:

callahan 2005-11-15 15:41 Rev.: 32560

Allow readers to disable output port caching

1 lines of code changed in 1 file:

callahan 2005-11-15 15:36 Rev.: 32559

Undo accidental checkin

1 lines of code changed in 1 file:

callahan 2005-11-15 15:36 Rev.: 32558

Fix typo in Sub-Networks menu configuration

4 lines of code changed in 3 files:

kuzimmer 2005-11-15 15:13 Rev.: 32557

Remove RescaleColorMap from the subnet

0 lines of code changed in 2 files:

callahan 2005-11-15 15:03 Rev.: 32556

HexVolMesh locate requires Face synchronization now.

14 lines of code changed in 1 file:

darbyb 2005-11-15 14:54 Rev.: 32555

Remove dependency on Core/Algorithms/DataIO/

0 lines of code changed in 2 files:

mdavis 2005-11-15 14:50 Rev.: 32554

Initial commit of NrrdTextureObj, and FreeTypeTextTexture classes. NrrdTextureObj just handles the binding of a 2D texture to the GL context. FreeTypeTextTexture renders a TrueType font to a NrrdTextureObj and provides calls to render to GL quads.

617 lines of code changed in 5 files:

mdavis 2005-11-15 14:32 Rev.: 32553

Initial commit of SCIRun->Render->Painter module for painting segmentaion seeds. Just a copy of ViewSlices module, no functionalty changed at this point.

3896 lines of code changed in 5 files:

kuzimmer 2005-11-15 14:08 Rev.: 32552

A sample plane subnet that provides functionality similar to the now extinct CuttingPlane retired years ago in the main trunk, but only recently in the Uintah package. The rendering options are saved to target constant basis fields

73 lines of code changed in 1 file:

kuzimmer 2005-11-15 14:04 Rev.: 32551

Remove CuttingPlane, use several modules in a subnet instead

0 lines of code changed in 4 files:

callahan 2005-11-15 12:03

Use compute_new_generation instead of generation++. Incrementing the generation number is not safe

16 lines of code changed in 6 files:

callahan 2005-11-15 12:02 Rev.: 32548

Fix compiler warning

4 lines of code changed in 1 file:

callahan 2005-11-15 11:44 Rev.: 32547

Compute new Datatype generation number on detach. (You detach because you want to change the object.)

0 lines of code changed in 6 files:

callahan 2005-11-15 11:43 Rev.: 32546

Fix compiler warning

1 lines of code changed in 1 file:

mdavis 2005-11-14 18:53 Rev.: 32545

Remove dead code

0 lines of code changed in 10 files:

mdavis 2005-11-14 18:46 Rev.: 32544

Remove dead code

0 lines of code changed in 1 file:

mdavis 2005-11-14 18:44 Rev.: 32543

Move GeomViewerItem class from Dataflow/Modules/Render/ViewGeom.h to Core/Geom/GeomViewerItem.h

299 lines of code changed in 12 files:

mdavis 2005-11-14 18:19 Rev.: 32542

Fix build, use .cc instead of .tcl for extension

1 lines of code changed in 1 file:

mdavis 2005-11-14 15:31 Rev.: 32541

Cosmetic code cleanup of DrawInfoOpenGL. Make all class member variable names end with an underscore ('_') to follow coding convetion. Removed GL header includes from DrawInfoOpenGL.h -- which forced adding GL includes to Core/Volume .cc files.

446 lines of code changed in 13 files:

kuzimmer 2005-11-14 14:50 Rev.: 32540

removed the get_type_name calls

69 lines of code changed in 11 files:

allen 2005-11-14 14:48 Rev.: 32539

removed depricated get_type_name and added typename

2 lines of code changed in 2 files:

mjc 2005-11-14 14:47 Rev.: 32538

depricate get_type_name

0 lines of code changed in 3 files:

callahan 2005-11-14 12:35 Rev.: 32537

Add breaks to switch statement, crash bug

0 lines of code changed in 2 files:

mjc 2005-11-14 11:51 Rev.: 32536

replace int get_type_description argument with enum

66 lines of code changed in 5 files:

mjc 2005-11-14 11:16 Rev.: 32535

replace int argument for get_type_description with enum that specifies which info you are interested in. depricate virtual const string get_type_name(int n = -1) const, use get_type_description(...)->get_name() instead.

426 lines of code changed in 106 files:

mjc 2005-11-14 09:14 Rev.: 32534

return false if locate fails

0 lines of code changed in 2 files:

darbyb 2005-11-11 20:52 Rev.: 32533

Add missiong BuildSeedVolume file.

233 lines of code changed in 1 file:

callahan 2005-11-11 17:56 Rev.: 32532

TriSurfMesh locate requires edge synchronization now

2 lines of code changed in 1 file:

callahan 2005-11-11 17:34 Rev.: 32531

Remove dangling ShowField module from example network

0 lines of code changed in 2 files:

callahan 2005-11-11 17:22 Rev.: 32530

Fix input port type check related crashes (basis)

8 lines of code changed in 2 files:

allen 2005-11-11 17:08 Rev.: 32529

changes to support field basis

251 lines of code changed in 10 files:

allen 2005-11-11 17:07 Rev.: 32528

clean up for when msa is not present

0 lines of code changed in 4 files:

allen 2005-11-11 17:06 Rev.: 32527

added support reexecuting for gui var state changes and changed names for consistancy

46 lines of code changed in 3 files:

callahan 2005-11-11 16:31 Rev.: 32525

Fix dynamic compilation of point cloud creation option in Unstructure

3 lines of code changed in 1 file:

callahan 2005-11-11 16:27 Rev.: 32524

Fix crash bug in DipoleSearch type checking code

0 lines of code changed in 2 files:

callahan 2005-11-11 16:19 Rev.: 32523

Work around point cloud basis singularity in ClipByFunction when clipping by nodes

17 lines of code changed in 3 files:

callahan 2005-11-11 15:50 Rev.: 32522

Minor cleanups, formatting

244 lines of code changed in 1 file:

callahan 2005-11-11 13:57 Rev.: 32521

Fix gcc 4.0 compilation

2 lines of code changed in 1 file:

allen 2005-11-11 13:54 Rev.: 32520

Corrected type name test and cleaned up braces

12 lines of code changed in 1 file:

allen 2005-11-11 13:51 Rev.: 32519

Changed comment

0 lines of code changed in 2 files:

mdavis 2005-11-11 13:25 Rev.: 32518

Fix ASSERT crash when rendering center axis

1 lines of code changed in 1 file:

mjc 2005-11-11 13:05 Rev.: 32517

fix surface normal rendering, add converter for new basis type

666 lines of code changed in 18 files:

mdavis 2005-11-11 13:04 Rev.: 32516

Added gui locks around all gui context resets and subvars (except constructor)

23 lines of code changed in 1 file:

mdavis 2005-11-11 12:55 Rev.: 32515

Fix compile

3 lines of code changed in 1 file:

mdavis 2005-11-11 12:28 Rev.: 32514

Remove directories that are not maintained nor needed for the core released code.

As it currently stands we don't distribute the MIT package, so to the outside world it looks like a bunch of dead code that is not being maintained.

Converted EditColorMap's use of Point2d and Vector2d to regular Point and Vector classes.

Added README to MIT package to let developers know how to find Core/2d, Core/Parts, and Core/PartsGui.


20 lines of code changed in 35 files:

mdavis 2005-11-10 18:50 Rev.: 32513

-Cut out DrawInfoOpenGL from Core/Geom/GeomOpenGL.cc into Core/Geom/GeomOpenGL.cc.
-Rename Core/Geom/GeomOpenGL.h to Core/Geom/DrawInfoOpenGL.h
-Fix #include statments for files that included Core/Geom/GeomOpenGL.h -- some files didn't need this include at all, just the sci_gl* includes.
-Add Plane::get(double[4]) method to return values how OpenGL wants them for clipping planes
-General cleanup and removed a few unused variables in DrawInfoOpenGL struct
-Moved ViewWindow:: symbols out of Dataflow/Modules/Render/OpenGL and into Dataflow/Modules/Render/ViewWindow.cc (where they belong)
-Hopefully this will provide some initial incentive to improve our GL state handling ablities

927 lines of code changed in 36 files:

callahan 2005-11-10 18:45 Rev.: 32512

Fix type check on input field

7 lines of code changed in 1 file:

callahan 2005-11-10 18:10 Rev.: 32511

Add ConstantBasis to ManageFieldData dynamic includes for when that conversion happens

1 lines of code changed in 1 file:

callahan 2005-11-10 18:09 Rev.: 32510

Fix bad input basis, should be constant

2 lines of code changed in 1 file:

ayla 2005-11-10 17:44 Rev.: 32509

Add Ncurses libraries to TxtBuilder makefile.

4 lines of code changed in 3 files:

ayla 2005-11-10 17:24 Rev.: 32508

Add check for Ncurses to configure.

601 lines of code changed in 5 files:

callahan 2005-11-10 16:59 Rev.: 32507

Fix FieldSlicer module to work with unstructured meshes again

5 lines of code changed in 1 file:

callahan 2005-11-10 16:24 Rev.: 32506

Fix output field type for streamlines algorithm, compile bug for non-scalar input seed field

93 lines of code changed in 3 files:

ayla 2005-11-10 16:17 Rev.: 32505

Initialize instead of assign default path.

1 lines of code changed in 1 file:

ayla 2005-11-10 16:16 Rev.: 32504

Updates to component models, services.

40 lines of code changed in 5 files:

ayla 2005-11-10 16:13 Rev.: 32503

Improve metacomponent model support in makefiles.

14 lines of code changed in 1 file:

ayla 2005-11-10 16:11 Rev.: 32502

Updates to framework.

9 lines of code changed in 1 file:

ayla 2005-11-10 16:01 Rev.: 32501

Moving SCIRun2 main file and ploader from src/main to SCIRun/StandAlone.

560 lines of code changed in 9 files:

ayla 2005-11-10 15:58 Rev.: 32500

Fix TypeMismatchException errors.

0 lines of code changed in 8 files:

callahan 2005-11-10 15:52 Rev.: 32499

Fix typo in last commit

1 lines of code changed in 1 file:

callahan 2005-11-10 15:52 Rev.: 32498

Fix output field type for Cellwalk streamlines algorithm

100 lines of code changed in 2 files:

callahan 2005-11-10 14:53 Rev.: 32497

Remove unused template parameter from StreamlinesAccAlgo

6 lines of code changed in 2 files:

guilkey 2005-11-10 14:04 Rev.: 32496

Added the "stop_time" functionality for use with rigid contact, currently
found in the explicit code. Also, removed a conditional for restarting due
to a nan residual. I can't see why the now removed condition was ever there.

20 lines of code changed in 3 files:

sachse 2005-11-10 12:52 Rev.: 32495

interface unified

2 lines of code changed in 1 file:

callahan 2005-11-10 12:44 Rev.: 32494

Fix output value type computations in Streamlines (index value/integration step mixxed up)

4 lines of code changed in 1 file:

sachse 2005-11-10 12:43 Rev.: 32493

bug fix

48 lines of code changed in 1 file:

mdavis 2005-11-10 12:26 Rev.: 32492

Add #include <sys/select.h> to find fd_mask

1 lines of code changed in 1 file:

guilkey 2005-11-10 12:15 Rev.: 32491

Removing the RigidBodyContact files as this functionality has been replaced
by Specified contact.

0 lines of code changed in 3 files:

allen 2005-11-10 12:00 Rev.: 32490

commiting before updating

546 lines of code changed in 7 files:

mdavis 2005-11-10 11:13 Rev.: 32489

Fix colormap1d widget in colormap2d software rasterization from going beyond colormap1d resolution

0 lines of code changed in 2 files:

jeroen 2005-11-10 09:49 Rev.: 32488

Bug fix: resize data vector to proper size

10 lines of code changed in 1 file:

ayla 2005-11-09 20:04 Rev.: 32487

Consolidate metacomponent, bridge headers and definitions.

48 lines of code changed in 1 file:

ayla 2005-11-09 20:02 Rev.: 32486

Update components.

0 lines of code changed in 10 files:

ayla 2005-11-09 19:53

Update components.

0 lines of code changed in 8 files:

callahan 2005-11-09 18:16 Rev.: 32483

Add internal code for allowing regression tests to do multiple executions.

105 lines of code changed in 5 files:

mdavis 2005-11-09 18:04 Rev.: 32482

Remove unused query funciton

0 lines of code changed in 2 files:

ayla 2005-11-09 17:43 Rev.: 32480

Add license to mpi header file.

0 lines of code changed in 2 files:

worthen 2005-11-09 16:08 Rev.: 32479

Get Windows Port back where we left off.
Core/Basis changes are to get symbols exported properly.

Core/Volume and ShaderProgramARB changes are temporary ifdefs of things that won't compile (GL extensions) or won't work

Everything else is to put it back the way it was (TCLInterface::exec and eval, OpenGL.cc, and Timer.cc).

155 lines of code changed in 16 files:

jeroen 2005-11-09 14:58 Rev.: 32478

bug fix for writing vectors

0 lines of code changed in 2 files:

mdavis 2005-11-09 14:32 Rev.: 32477

Increase ambient scale term for TexSquare so ViewSlices cutting planes dont render as black when not facing the light source in BioIMage

7 lines of code changed in 1 file:

ayla 2005-11-09 13:44 Rev.: 32476

Correct disable dataflow bug: check value of sci_required_dataflow. Setting sci_required_scirun is also useful. Add sci_defs header to files that check BUILD_DATAFLOW.

381 lines of code changed in 4 files:

mjc 2005-11-09 12:57 Rev.: 32475

get numProcessors initialized from ::initialize()

0 lines of code changed in 2 files:

mjc 2005-11-09 12:24 Rev.: 32474

return the correct number of processors

19 lines of code changed in 1 file:

mjc 2005-11-09 12:23 Rev.: 32473

remove duplicate file

0 lines of code changed in 1 file:

mjc 2005-11-09 11:09 Rev.: 32472

add generic elem_locate, make high order basis meshes use it for locating elements

34 lines of code changed in 14 files:

jeroen 2005-11-09 09:47 Rev.: 32471

added port that outputs filename plus extension

17 lines of code changed in 2 files:

ayla 2005-11-08 19:17 Rev.: 32470

Use Guards for mutex lock and unlock. Prefer initializers to assignment in constructor. Use the std:: namespace consistently (and using the entire namespace is unnecessary).

0 lines of code changed in 2 files:

bigler 2005-11-08 12:53 Rev.: 32464


SCIRun/Core/Containers/Array1.h
SCIRun/Core/Containers/Array2.h
SCIRun/Core/Containers/Array3.h

Added #ifdef SCI_NOPERSISTENT to allow these classes to be compiled
without Pio stuff.

SCIRun/Core/Math/MiscMath.h

Added float versions of Floor and Ceil.

65 lines of code changed in 4 files:

jeroen 2005-11-08 11:04 Rev.: 32463

Bug fixes: Files still made use of original SCIRun reader and writer and no the one that was modified to read filenames dynamically

24 lines of code changed in 28 files:

jeroen 2005-11-07 22:24 Rev.: 32462

bug fixes

17 lines of code changed in 1 file:

jeroen 2005-11-07 21:18 Rev.: 32461

bug fixes for GCC4.0

16 lines of code changed in 5 files:

jeroen 2005-11-07 20:05 Rev.: 32460

GCC4 bug fixes

71 lines of code changed in 5 files:

jeroen 2005-11-07 19:14 Rev.: 32459

bug fixes to dynamic code

1 lines of code changed in 1 file:

jeroen 2005-11-07 18:59 Rev.: 32458

Apparently GCC4 does not resolve symbols in the next header file, switching order of includes to make SCIRun compile

1 lines of code changed in 1 file:

livne 2005-11-07 17:47 Rev.: 32457

Changed cout_dbg to cerr in printing hypre amr solver info.

6 lines of code changed in 1 file:

mjc 2005-11-07 15:38 Rev.: 32456

fix and use locate

28 lines of code changed in 1 file:

mdavis 2005-11-07 15:18 Rev.: 32455

Remove loop to calculate const data.

20 lines of code changed in 1 file:

jeroen 2005-11-07 15:14 Rev.: 32454

bug fix: renamed textfile plugin

1 lines of code changed in 1 file:

jeroen 2005-11-07 14:58 Rev.: 32453

bug fixes

2 lines of code changed in 1 file:

jeroen 2005-11-07 14:28

bug fix

2 lines of code changed in 3 files:

mjc 2005-11-07 14:05 Rev.: 32449

remove debug prints

2 lines of code changed in 1 file:

yguo 2005-11-07 13:53 Rev.: 32448

Add in the options and the algorithms of calculating COD at the positions:
(1) the farthest point on the crack element at crack-front, and
(2) the intersection between the J integral contour and crack plane.

0 lines of code changed in 2 files:

yguo 2005-11-07 13:51 Rev.: 32447

Read in "CODOption" to control the position where the COD is calculated.

0 lines of code changed in 2 files:

yguo 2005-11-07 13:50 Rev.: 32446

Add in a parameter "CODOption": CODOption=0 (default value) means calculating COD at a fixed position; CODOption=1 means calculating COD at the farthest point on the crack element at crack-front; CODOption=2 means calculating COD at the intersection between the J integral contour and crack plane.

0 lines of code changed in 2 files:

mjc 2005-11-07 13:46 Rev.: 32445

remove locate from get_weights as prior to hobasis

42 lines of code changed in 1 file:

callahan 2005-11-07 11:51 Rev.: 32443

Fix include order compilation failure.

4 lines of code changed in 1 file:

darbyb 2005-11-07 09:29 Rev.: 32442

Fix UnuAxinfo to save out whether or not each field should be updated.

41 lines of code changed in 3 files:

jeroen 2005-11-06 16:00 Rev.: 32441

Bug fixes for string writer; added two new modules for selecting nodes/elements in fields that can be fully scripted.

1155 lines of code changed in 16 files:

sachse 2005-11-05 14:09 Rev.: 32440

UCSD edge-based scalefactors implemented

867 lines of code changed in 2 files:

worthen 2005-11-04 17:25 Rev.: 32439

Weight the patches with the time refinement ratio

0 lines of code changed in 4 files:

worthen 2005-11-04 17:25 Rev.: 32438

Have the printed walltime reflect the taskgraph compilation time on the correct timestep

0 lines of code changed in 2 files:

darbyb 2005-11-04 12:59 Rev.: 32436

Merge NCMIR branch into trunk. New modules SliceReader (reads in Analyze files a slice at a time), SeedPoints, and BuildSeedVolume. Removed ThresholdSegmentationLevelSetImageFilter generating files and replaced with permanant files to allow for stopping the segmentation. LevelSetSegmenter app now built when Insight package is enabled although it currently crashes and I think the crash is related to bug 2805.

9137 lines of code changed in 28 files:

ayla 2005-11-04 12:05 Rev.: 32434

Updates to makefile.

0 lines of code changed in 2 files:

mjc 2005-11-04 11:25 Rev.: 32433

template parameter naming consistency, remove useless arrays, clean up comments

69 lines of code changed in 14 files:

harman 2005-11-04 10:00 Rev.: 32432

don't ask the user to replace the checkpoints if they're replacing the uda
(sh is stupid! var=value and var = value mean something different)

0 lines of code changed in 2 files:

mdavis 2005-11-04 07:06 Rev.: 32431

Optimize gpu gradient computation to make it work on ATI cards

0 lines of code changed in 2 files:

dav 2005-11-03 19:16 Rev.: 32430

These should fix the SGI compilation... I think. I have one other
hack in another file that may be necessary, but the compilation seems
to work (sometimes) without it, so I am leaving it out for now.

Core/Basis/Constant.h

Fixed SGI compilation by making the array non zero in size. I added a
comment in the file about what I did, but it would be great if someone
who really knows what is going on would update the comment to reflect
that knowledge.

Removed a argument to derivate to quite the compiler. Don't know if that
arg should be used or not, and put in a comment to this effect. Again,
if someone who knows this code could update the comment, that would be
great.

Core/Basis/NoData.h

Same non-zero array fix as reported above.

22 lines of code changed in 2 files:

callahan 2005-11-03 15:57 Rev.: 32429

Implement fast get_edges

37 lines of code changed in 1 file:

mdavis 2005-11-03 15:32 Rev.: 32428

Implement software 1d colormap rendering as a ColorMap2D widget

44 lines of code changed in 1 file:

ayla 2005-11-03 15:02 Rev.: 32427

Fix missing brace in namespace.

2 lines of code changed in 1 file:

callahan 2005-11-03 14:46 Rev.: 32426

Fix pl_approx_edges for TriSurfMesh so that they render edges correctly

1 lines of code changed in 1 file:

harman 2005-11-03 14:24 Rev.: 32425

computeDelPressAndUpdatePressCC()
- at coarse fine interfaces set the press_CC = press_equil
This bould be trouble.

9 lines of code changed in 1 file:

kuzimmer 2005-11-03 13:02 Rev.: 32424

Added dynamic compilation and fix for HOB fields

12 lines of code changed in 2 files:

ayla 2005-11-03 12:24 Rev.: 32423

Add TypeMismatchException.

106 lines of code changed in 3 files:

mdavis 2005-11-03 12:19 Rev.: 32422

Compute Gradient on GPU for faster volume rendering of large datasets. Offloads computation of gradient from CPU to GPU so we can use more texture space on actual data.

116 lines of code changed in 4 files:

worthen 2005-11-03 11:58 Rev.: 32421

AMR Updates - get imp AMR working better in parallel (still crashes in hypre code), multi-level ICE with MPM mostly works AMRICE.cc - coarsen/reflux to ice matls only, and my 'boundary' hack in an '#ifdef BRYAN' blockICE.cc - set the surrounding matl at problemSetup time, some more debugging info for when the delt is too small

486 lines of code changed in 17 files:

harman 2005-11-03 09:48 Rev.: 32420

added computeEquilPressure_1_matl() task (needed for imp_AMR_ICE)
-single material EOS evalution for the pressure
-rho_micro = rho_CC; sp_vol = 1/rho_CC; vol_frac = 1.0

117 lines of code changed in 2 files:

callahan 2005-11-02 18:31 Rev.: 32419

Allow for basis change in ManageFieldData again. Also change how datasize is computed.

36 lines of code changed in 3 files:

callahan 2005-11-02 17:54 Rev.: 32418

Greatly simplify the ManageFieldData output field creation code

107 lines of code changed in 2 files:

mjc 2005-11-02 16:15 Rev.: 32417

fix loading of HexTricubicHmtScaleFactor basis fields, add more types of loading for ucsd data

180 lines of code changed in 2 files:

kuzimmer 2005-11-02 15:45 Rev.: 32416

removed debugging printouts.

11 lines of code changed in 1 file:

callahan 2005-11-02 15:27 Rev.: 32415

Fix SetupFEMatrix to use new basis

42 lines of code changed in 2 files:

callahan 2005-11-02 15:26 Rev.: 32414

Fix AttractNormals dynamic compilation

0 lines of code changed in 2 files:

kuzimmer 2005-11-02 14:40 Rev.: 32413

removed debugging printouts.

0 lines of code changed in 1 file:

kuzimmer 2005-11-02 14:38 Rev.: 32412

More required changes for HOB fields.

59 lines of code changed in 2 files:

harman 2005-11-02 14:27 Rev.: 32411

symmetryTests: changes so it works on multiple levels

0 lines of code changed in 2 files:

callahan 2005-11-02 14:11 Rev.: 32410

Fix dynamic compilation of IndicesToTensors and TensorsToIndices

18 lines of code changed in 6 files:

ayla 2005-11-02 14:03 Rev.: 32409

Added type checking to TypeMap.

0 lines of code changed in 4 files:

mdavis 2005-11-02 13:43 Rev.: 32408

Remove Core/Volume/Util.cc and move IsPowerOf2 and LargestPowerOf2 functions to Core/Math/MiscMath.h

43 lines of code changed in 12 files:

callahan 2005-11-02 11:52 Rev.: 32407

Support Vector and Tensor fields again in FieldToNrrd

5 lines of code changed in 1 file:

callahan 2005-11-01 18:13 Rev.: 32406

Fix to allow ChangeFieldDataType to result in Vector/Tensor field (include error)

2 lines of code changed in 1 file:

callahan 2005-11-01 18:07 Rev.: 32405

Build DirectMapping output type correctly so that if src and dst fields have different types it dynamically compiles again

16 lines of code changed in 3 files:

callahan 2005-11-01 17:52 Rev.: 32404

Use airStrdup, fixes null pointer crash bugs

18 lines of code changed in 4 files:

callahan 2005-11-01 16:49 Rev.: 32403

synchronize LOCATE_E before doing get_weights on meshes in DirectMapping and BuildMappingMatrix

3 lines of code changed in 3 files:

callahan 2005-11-01 16:44 Rev.: 32402

synchronize LOCATE_E before doing interpolations on meshes in DirectMapping

1 lines of code changed in 1 file:

callahan 2005-11-01 16:28 Rev.: 32401

Fix field type check for basis types

8 lines of code changed in 1 file:

callahan 2005-11-01 16:09 Rev.: 32400

Fix VolumeVisualizer infinite looping when there is no 2d colormap present.

3 lines of code changed in 1 file:

worthen 2005-11-01 15:55 Rev.: 32399

Add new regridder feature to combine rectangular sets of patches together

0 lines of code changed in 6 files:

harman 2005-11-01 15:55 Rev.: 32398

-scheduleSolve() and bogus_imp_delP() now modifies imp_delP instead of computes it.
-removed initialGuess junk

9 lines of code changed in 1 file:

worthen 2005-11-01 15:55 Rev.: 32397

Sort Superboxes by their ids before their pointer value

0 lines of code changed in 2 files:

worthen 2005-11-01 15:53 Rev.: 32396

Reduce spew on restarts

0 lines of code changed in 2 files:

worthen 2005-11-01 15:53 Rev.: 32395

Various scheduler changes to prepare for AMR features and bugs (needed with the last commit)

0 lines of code changed in 6 files:

worthen 2005-11-01 15:50 Rev.: 32394

Various scheduler changes to prepare for AMR features and bugs

201 lines of code changed in 15 files:

worthen 2005-11-01 13:46 Rev.: 32393

Add Patch::Coarse to list of boundary types

0 lines of code changed in 2 files:

worthen 2005-11-01 13:45 Rev.: 32392

Add the initialization regrid to the AMR SCI_DEBUG

7 lines of code changed in 1 file:

callahan 2005-11-01 11:45 Rev.: 32391

Remove deprecated networks

0 lines of code changed in 2 files:

callahan 2005-11-01 11:14 Rev.: 32390

Fix BuildTriFEMatrix.cc compilation

10 lines of code changed in 1 file:

darbyb 2005-11-01 11:00 Rev.: 32389

Fix case where data type description isn't defined.

23 lines of code changed in 1 file:

guilkey 2005-11-01 10:49 Rev.: 32388

Minor fix to the way the convergence criteria are computed.

5 lines of code changed in 1 file:

jeroen 2005-11-01 10:41 Rev.: 32387

First in series of bug fixes to have my model creation package work with the HOB functionality

1885 lines of code changed in 29 files:

jeroen 2005-11-01 10:39 Rev.: 32386

more bug fixes for matlab file writers

10 lines of code changed in 1 file:

mjc 2005-11-01 09:19 Rev.: 32384

implement get_faces and get_edges

58 lines of code changed in 1 file:

jeroen 2005-11-01 00:20 Rev.: 32383

More bug fixes in dynamically compiled classes

61 lines of code changed in 1 file:

October 2005 »

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