August 2017 Commit Log

Number of Commits:
85
Number of Active Developers:
11
dav 2017-08-31 17:11 Rev.: 56954

Remove tabs, alphabetize

12 lines of code changed in 1 file:

derekhar 2017-08-31 17:08 Rev.: 56953

New soot volume fraction computation.

222 lines of code changed in 2 files:

derekhar 2017-08-31 16:34 Rev.: 56950

Decoupled computation of soot volume fraction and the radiative contribution from soot. Minor clean-up of estalished property models.

25 lines of code changed in 15 files:

jthornoc 2017-08-31 16:17 Rev.: 56949

Fixing a bug in the direction member of the computePsi class.

0 lines of code changed in 2 files:

derekhar 2017-08-30 17:42 Rev.: 56945

Added a 4 band spectral property model for CO2-H2O mixtures. Based on publication Bordbar et al. 2014.
The model was developed to be accurate in the temperate range of 500K-2400K and H2O/CO2 molar ratios ranging from 0.01 to 4.0.

348 lines of code changed in 4 files:

jas 2017-08-30 17:08 Rev.: 56944

Update Wasatch 3P hashes, and change version number to 2.1 for release.

0 lines of code changed in 4 files:

jthornoc 2017-08-30 16:17 Rev.: 56943

Add an unmanaged (with respect the ArchesTaskInterface) variable access.
This will allow users to declare variables in a traditional Uintah
style. E.g.:

CCVariable<double> A;
tsk_info->get_unamanaged_uintah_field<CCVariable<double> >(...);

78 lines of code changed in 6 files:

jthornoc 2017-08-30 13:35 Rev.: 56942

Bad commit in last commit.

0 lines of code changed in 1 file:

jthornoc 2017-08-30 13:34 Rev.: 56941

Even more missing files.

313 lines of code changed in 3 files:

jthornoc 2017-08-30 13:31 Rev.: 56940

More missing files.

178 lines of code changed in 2 files:

jthornoc 2017-08-30 13:28 Rev.: 56939

Adding missing files.

201 lines of code changed in 2 files:

jthornoc 2017-08-30 13:28 Rev.: 56938

Removing outputInitTimestep and turning on restart tests. This will
break the RT for these tests.

14 lines of code changed in 1 file:

allen 2017-08-30 13:14 Rev.: 56937

added check for valid patches and materials

2 lines of code changed in 1 file:

harman 2017-08-30 12:27 Rev.: 56936



Clean up the mess that someone left when they modified sus's output.


27 lines of code changed in 2 files:

jthornoc 2017-08-30 11:10 Rev.: 56935

Keeping it to one Re_limit spec. This actually fixes a
bug since the Re_wall_upwind limit was only being using for the x-mom
component and not y,z. Now all components for hybrid or wall-upwind are
using one Re_limit.

8 lines of code changed in 3 files:

jthornoc 2017-08-30 11:10 Rev.: 56934

* Moved the calc of the CC velocities into its own task (by necessity)
* Add an optional parameter to the task scheduling through the factory to ignore the task if not found.
* Some additional cleanup

64 lines of code changed in 8 files:

jthornoc 2017-08-30 11:10 Rev.: 56933

Adding the WALE model.

10 lines of code changed in 2 files:

jthornoc 2017-08-30 11:09 Rev.: 56931

Adding Smag model.

309 lines of code changed in 5 files:

jthornoc 2017-08-30 11:09 Rev.: 56930

* cleaned up some unused functionality in the ConvectionHelper - Specifically the old implementation of the staggered convective operator.
* In GridTools, moved around the enums for the DIR variable to make better sense.
* Added the start of a 1D interpolator. This needs some (re)verification since I modified what Oscar had initially.
* Had to add const version of the VariableHelper.
* Using the 1D interpolator, added a helper task to do 1D interpolation. Needs a little more work as it currently excludes FC -> FC

176 lines of code changed in 4 files:

jthornoc 2017-08-30 11:09 Rev.: 56928

Actually add the FileInit files.

185 lines of code changed in 2 files:

jthornoc 2017-08-30 11:09 Rev.: 56927

Adding a generic field initializer from file which formatting should
follow:

i j k value

or:

i j k vec0 vec1 vec2

where vec is a vector.

28 lines of code changed in 1 file:

jthornoc 2017-08-30 11:09 Rev.: 56926

Move the stress tensor to the Transport directory.
House it under the transport factory.

286 lines of code changed in 9 files:

jthornoc 2017-08-30 11:09 Rev.: 56925

Adding the stress tensor calc.

285 lines of code changed in 5 files:

harman 2017-08-30 10:20 Rev.: 56924

Added DOUT calls for displaying the task's computes/requires when SCI_DEBUG TaskGraph is enabled.

17 lines of code changed in 4 files:

allen 2017-08-29 17:01 Rev.: 56923

added fix for per patch data handling

74 lines of code changed in 1 file:

allen 2017-08-29 17:00 Rev.: 56922

added check to FIleInfo per patch data

12 lines of code changed in 1 file:

allen 2017-08-29 16:55 Rev.: 56921

moved timer so to be per patch

3 lines of code changed in 1 file:

guilkey 2017-08-25 13:11 Rev.: 56916

Resurrect RMPMICE.

168 lines of code changed in 2 files:

jbhooper 2017-08-25 09:35 Rev.: 56914

-- Fix labels so that errors point to the proper routines.

4 lines of code changed in 1 file:

derekhar 2017-08-24 11:48 Rev.: 56913

Reduced round-off error in numerical deriviative.

0 lines of code changed in 2 files:

harman 2017-08-23 14:55 Rev.: 56909

problemSetup()
- Throw an exception if the number of patches in a direction is greater than the number of cells.

10 lines of code changed in 1 file:

allen 2017-08-22 17:23 Rev.: 56906

fixed bug with getting correct name

23 lines of code changed in 1 file:

harman 2017-08-22 14:23 Rev.: 56905

isValid_inputFile()
-Additional contraints for determining when a input file is valid.
<outputInitTimestep/> + outputTimestepInterval > 1

25 lines of code changed in 1 file:

harman 2017-08-21 15:08 Rev.: 56904

isValid_inputFile()
- Ignore tests that start from a pre-computed checkpoint.

7 lines of code changed in 1 file:

harman 2017-08-21 12:28 Rev.: 56902

Skip all tests that contain

<outputInitTimestep/>

and warn the user. When <outputInitTimestep/> is enabled orginal:index.xml != restart:index.xml,
there's an off by 1 issue is how output timesteps are counted.


49 lines of code changed in 1 file:

jbhooper 2017-08-18 16:16 Rev.: 56900

-- Further encapsulate Solid State Diffusion variables into diffusion specific code blocks.
-- Clean up and extend diffusion models to account for thermodynamic driving forces.
-- Standardize diffusion material interfaces with other MPM material interface approach
-- Standardize diffusion model input/output

304 lines of code changed in 27 files:

harman 2017-08-18 16:13 Rev.: 56899

L0osen the comparison tolerances for advect_+_amr and advect_HollowSphere_amr since they're non-deterministic.

3 lines of code changed in 1 file:

allen 2017-08-18 14:58 Rev.: 56898

added additional analysis vars

47 lines of code changed in 1 file:

allen 2017-08-18 14:57 Rev.: 56897

removed unneed function

0 lines of code changed in 2 files:

allen 2017-08-18 14:57 Rev.: 56896

added additional analysis vars

134 lines of code changed in 2 files:

allen 2017-08-16 16:09 Rev.: 56892

clean up for the node meshes

401 lines of code changed in 3 files:

harman 2017-08-16 13:52 Rev.: 56891

added nightly performance regression test. ICE advect with 32K patches on a single level.
The boxes/patches are distributed cylindrically.

2 lines of code changed in 1 file:

harman 2017-08-16 13:45 Rev.: 56890

setOverlappingPatches()
- optimization: Find and loop over neighbor patches instead of all patches.

15 lines of code changed in 1 file:

allen 2017-08-15 16:36 Rev.: 56889

fixed comment

2 lines of code changed in 1 file:

allen 2017-08-15 16:35 Rev.: 56888

updated for node based grids

302 lines of code changed in 2 files:

harman 2017-08-15 10:42 Rev.: 56887

Added a more rigorous test of the AMR infrastructure.
Adjusted parameters in the ups for RT tests.

There is something non-deterministic about this test.

12 lines of code changed in 1 file:

ahumphrey 2017-08-14 21:42 Rev.: 56886

Clear out all dead code related to the old topological sort. None of this is used anymore. Drastically simplifies understanding of the magic task graph code.

62 lines of code changed in 11 files:

jthornoc 2017-08-12 21:56 Rev.: 56884

Adding stress term calculation.

43 lines of code changed in 2 files:

jthornoc 2017-08-12 21:56 Rev.: 56883

Using the variable helper names to remove logic.

10 lines of code changed in 1 file:

jthornoc 2017-08-12 21:56 Rev.: 56882

Directional dependent sources for the momentum solver.

57 lines of code changed in 1 file:

jthornoc 2017-08-12 21:56 Rev.: 56881

LATESTDW -> NEWDW

1 lines of code changed in 1 file:

jthornoc 2017-08-12 21:56 Rev.: 56879

Some slight tweaking of Oscars code.
No RT answers should be affected at this point.

60 lines of code changed in 4 files:

jthornoc 2017-08-12 21:56 Rev.: 56878

For Oscar (with edits from Jeremy):

Adding the new source term factory with the MMS source terms.

1298 lines of code changed in 11 files:

ahumphrey 2017-08-11 18:18 Rev.: 56877

Cleanup and refactoring in DetailedTasks as the TG compilation issue is revisited.

191 lines of code changed in 4 files:

ahumphrey 2017-08-11 18:14 Rev.: 56876

Fix builds without Hypre enabled - e.g. componentless build, etc.
SolverTest2 directly included Hypre headers no matter what.

6 lines of code changed in 2 files:

ahumphrey 2017-08-11 14:24 Rev.: 56875

Short circuit unnneccesary dependency analysis when creating DetailedDependencies

26 lines of code changed in 1 file:

cgritton 2017-08-11 11:05 Rev.: 56873

Fixed issues with boundary conditions for heat example

26 lines of code changed in 1 file:

jthornoc 2017-08-10 17:25 Rev.: 56872

* Add the pressure boundary conditions post pressure linear solve which eases the calculation of the pressure gradient.
* Added a cc-velocity calculation
* Fixed a bug in the u = rho*u/rho calculation for walls (was getting something / zero )
* Pressure gradient wasn’t being added on the + side properly when boundary conditions - fixed.
* KFEupdate had one too many iterators on the + side - Fixed

259 lines of code changed in 12 files:

dav 2017-08-10 15:23 Rev.: 56871


M Core/Disclosure/TypeDescription.h
M Core/Disclosure/TypeDescription.cc

- Added utility function to return string version of "Type" enumerated type.

M Core/ProblemSpec/ProblemSpec.cc

- White space.

47 lines of code changed in 3 files:

cgritton 2017-08-10 15:23 Rev.: 56870

Added to new examples components to for developing Hypre IJ interface and AMR. Currenlty these components are barebones examples that will be iterated upon.

628 lines of code changed in 10 files:

ahumphrey 2017-08-10 11:34 Rev.: 56868

Pulling template_testdefs weeds. This should no longer be necessary.
Regenerate configure script (w/ autoconf v2.69)

2 lines of code changed in 11 files:

ahumphrey 2017-08-10 11:05 Rev.: 56867

Refine PAPI support - should be ready to go now, also for the release.

47 lines of code changed in 4 files:

ahumphrey 2017-08-09 20:03 Rev.: 56865

Count TLB misses when PAPI is enabled.

9 lines of code changed in 3 files:

ahumphrey 2017-08-09 19:50 Rev.: 56864

Fix issue where unavailble PAPI events were being processed as RunTimeStats in the ReductionInfoMapper. Basically - only process and report on availble PAPI events.

20 lines of code changed in 2 files:

ahumphrey 2017-08-09 18:39 Rev.: 56863

* Use PAPI_strerror() to report text related to specific PAPI error code. Much simpler than what was done prior.
* Fix linker issue when building StandAlone tools/tests with PAPI enabled

34 lines of code changed in 3 files:

ahumphrey 2017-08-09 17:15 Rev.: 56862

Default initilization for PapiEvent struct.

8 lines of code changed in 2 files:

ahumphrey 2017-08-09 13:33 Rev.: 56859

Cleanup and refactoring with PAPI support.

156 lines of code changed in 5 files:

ahumphrey 2017-08-09 12:02 Rev.: 56858

Actually fix PAPI support.

8 lines of code changed in 2 files:

ahumphrey 2017-08-09 11:48 Rev.: 56857

Repair broken PAPI support.

19 lines of code changed in 3 files:

bisaac 2017-08-09 11:47 Rev.: 56856

Fixed Nan issue in new Nox model. This will change the answers for Coal_Nox.

247 lines of code changed in 1 file:

bisaac 2017-08-08 13:59 Rev.: 56854

Added regression test for the new NOx model.

3 lines of code changed in 1 file:

bisaac 2017-08-08 12:02 Rev.: 56853

This commit adds ZZs nox model.

721 lines of code changed in 4 files:

bisaac 2017-08-07 17:12 Rev.: 56852

Fixed a bug related to the deposition model. This was setting the destruction rate to zero. This will break deposition regression tests.

6 lines of code changed in 1 file:

jthornoc 2017-08-07 16:23 Rev.: 56851

Remove a debug print statement.
Removed the MACRO in ComputePsi in favor of a templated function.

71 lines of code changed in 2 files:

ahumphrey 2017-08-07 12:35 Rev.: 56849

* Remove lock in MPIScheduler::postMPIRecvs. DependencyBatch members that are shared are now atomic. This lowers local comm time.

* When using const_iterator for STL containers, etc, use cbegin() and cend()

* Use locks to make incrementing stats for InfoMapper thread safe (very small sections of code). Reliable info is now reported when using the UnifiedScheduler. We might consider making relevant members of InfoMapper class atomic.

115 lines of code changed in 1 file:

jthornoc 2017-08-04 16:10 Rev.: 56848

Fix some confusing use of enums in the FEUpdate
Fix a bug when applying BCs for scalars - it was being skipped when the pressure system was not constructed.
Fix a bug with the GetPsi macro - index spaces were off

33 lines of code changed in 4 files:

bisaac 2017-08-04 16:05 Rev.: 56847

This fixes the volume fraction multiplication for the v momentum diffusion term. This will break all tests using hybrid and wall_upwind momentum discretization.

12 lines of code changed in 3 files:

jas 2017-08-04 09:53 Rev.: 56846

Use C++11 hashmap.

3 lines of code changed in 6 files:

jbhooper 2017-08-04 09:44 Rev.: 56845

-- Include <climits> for INT_MAX invocation.

(I have no clue where the buildbot compilation is picking up the climits inclusion from that it's not throwing the compilation error that I'm seeing.)

1 lines of code changed in 1 file:

jthornoc 2017-08-03 15:58 Rev.: 56843

Renaming ijk macros to avoid boost clash.

46 lines of code changed in 4 files:

harman 2017-08-03 15:35 Rev.: 56842

MPMICE.py
- Enabled AMR test with a non-cubic fine level with inside corners.

inputs/MPMICE
- adjusted parameters in advect_+_amr.ups to be be used in nightly RT
- added input file for testing infrastructure. A hollow sphere moving across
the domain. Multiple regrids and lots of inside corners.

1 lines of code changed in 1 file:

harman 2017-08-03 15:29 Rev.: 56841

Level:
- added code to keep track of overlapping patches and their overlapping regions, setOverlappingPatches()

- getOverlapCellsInRegion()
returns the range of overlapping cells for a region and patches set.

OnDemandDataWarehouse::getRegionModifiable()
Thrown an exception if a) number of copied cells != number of requested cells and
b) nCellsCopied < requestedCells + overLapCells_range_min
c) nCellsCopied > requestedCells + overLapCells_range.max


M Core/Grid/Level.cc
M Core/Grid/Level.h
M CCA/Components/Schedulers/OnDemandDataWarehouse.cc

167 lines of code changed in 3 files:

jthornoc 2017-08-03 15:21 Rev.: 56840

This fixes a bug, thanks to Alan. There appears to be no change in the
RT, however.

2 lines of code changed in 1 file:

ahumphrey 2017-08-02 17:23 Rev.: 56838

* Clean up several race conditions, true positives reported by TSAN.
* Catch exceptions by ref (should probably catch by const ref)
* Also clear out some compiler warnings, etc.

70 lines of code changed in 9 files:

allen 2017-08-02 15:51 Rev.: 56836

added interface to get the global uintah patch id

32 lines of code changed in 3 files:

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