September 2017 Commit Log

Number of Commits:
70
Number of Active Developers:
11
bisaac 2017-09-29 17:32 Rev.: 57055

Fixed hi yield bug which occurs when temperatues exceed Tbp_graphite.

1 lines of code changed in 1 file:

harman 2017-09-29 13:21 Rev.: 57053

*.py: Linux-> all

runSusTests and generateGoldStandards:
- Warn the user if the OS they're using while running the localRT isn't valid for a component.


62 lines of code changed in 8 files:

jthornoc 2017-09-29 13:13 Rev.: 57052

Linux tests to All.

91 lines of code changed in 1 file:

zhouminmin 2017-09-29 13:03 Rev.: 57051

Add log law wall model by wall_closure 'log' label

381 lines of code changed in 5 files:

zhouminmin 2017-09-28 22:02 Rev.: 57048

Fix the bugs for sigma model

0 lines of code changed in 2 files:

jthornoc 2017-09-28 17:08 Rev.: 57047

Reformulation of the wall closure for our LES algorithm. Previous implementation was buggy and of unclear origin. This commit adds three approaches to computing the wall shear stress with the option of adding more in the future. Included also is a full slip condition.

In addition, the wall upwind approach in the hybrid coef code has been removed in favor of these “physically-based” approaches.

This commit breaks several tests. Input files have been updated accordingly.

-Ben, Jeremy et al.

671 lines of code changed in 13 files:

jthornoc 2017-09-28 17:08 Rev.: 57046

Fixed a bug in the KScalarRHS - initialize RHS to zero.
Add some error checking in Properties.
Minor edit to almgrenMMS input file.

6 lines of code changed in 2 files:

jthornoc 2017-09-28 16:56 Rev.: 57045

Some minor cleanup accessing the task interface from the ExplicitSolver.
Also added access to some other factories in Explicit Solver.

88 lines of code changed in 4 files:

jsutherland 2017-09-28 16:44 Rev.: 57044

Update to new SpatialOps

1 lines of code changed in 1 file:

jas 2017-09-28 14:47 Rev.: 57043

Remove unused HashTable.

0 lines of code changed in 1 file:

harman 2017-09-28 14:40 Rev.: 57042

No longer saving the flag isNonCubic to udas. That flag is now set whenever a level is finalized.
If the volume of a level's bounding box != sum(patch volumes) then a level is nonCubic.

Level.cc
computeVariableExtents(): added particle type and fixed NCVariable extents.

Ups files: added <Grid doAMR= "true"> to files where it was missing.
removed <nonCubid_domain>

Ray.cc: diabled isnan bulletproofing. Something isn't working correctly and nans are being detected.

** You need to run make reallyclean before compiling.

79 lines of code changed in 5 files:

jas 2017-09-28 11:20 Rev.: 57041

Remove use of HashTable.h -- legacy implementation.

4 lines of code changed in 3 files:

bisaac 2017-09-28 10:15 Rev.: 57039

Updated illinois 6 ash data base.

7 lines of code changed in 1 file:

jas 2017-09-28 09:21 Rev.: 57038

Remove fixedvector.h header.

0 lines of code changed in 1 file:

ahumphrey 2017-09-27 17:26 Rev.: 57037

Should fix the problem on Mira with crashing threads.

12 lines of code changed in 1 file:

ahumphrey 2017-09-27 17:11 Rev.: 57036

Remove delayed thread detach hack.

1 lines of code changed in 1 file:

jas 2017-09-27 16:47 Rev.: 57035

Remove fixedvector, use vector<> instead.

0 lines of code changed in 2 files:

ahumphrey 2017-09-27 16:34 Rev.: 57034

Somehow the elimination of duplicate dependencies has fouled up OutputNthProc. Revert commit -r56875 until I can figure this one out.

7 lines of code changed in 1 file:

bisaac 2017-09-27 16:24 Rev.: 57033

Added a new coal for the emissivity model.

15 lines of code changed in 1 file:

jas 2017-09-27 14:27 Rev.: 57032

Do not use FixedVector for selectType. Use std::vector<> instead.

7 lines of code changed in 2 files:

jsutherland 2017-09-27 09:07 Rev.: 57031

- Minor changes to conform to SpatialOps changes.
- update auto-build SpatialOps hash
- clean up a few warnings.

44 lines of code changed in 24 files:

jsutherland 2017-09-27 09:06 Rev.: 57030

Point to new SpatialOps version.

1 lines of code changed in 1 file:

jsutherland 2017-09-27 09:06 Rev.: 57029

Minor cleanup

0 lines of code changed in 6 files:

harman 2017-09-25 17:53 Rev.: 57028

- Developers no longer needs to use 1.1 to signal that mpirun should be used, it's now the default.
- Removed the "-mpi" sus option.

188 lines of code changed in 11 files:

bisaac 2017-09-25 17:07 Rev.: 57027

Updated the FOWY devol model to include linear increasing yield above 1800K. This will break all coal cases using FOWY.

113 lines of code changed in 6 files:

jas 2017-09-21 14:26 Rev.: 57022

Replace deprecated finite with isfinite()

1 lines of code changed in 1 file:

allen 2017-09-21 12:09 Rev.: 57021

reverted code to keep the last reduction task and added dbg statement

26 lines of code changed in 1 file:

allen 2017-09-20 12:50 Rev.: 57016

fixes for W-cycle and performing on-the-fly analysis

183 lines of code changed in 16 files:

ahumphrey 2017-09-19 18:08 Rev.: 57015

Pass generic tg_num to addTask, let that method handle details.

1 lines of code changed in 1 file:

ahumphrey 2017-09-19 17:17 Rev.: 57014

Extract common code for adding task to task graph(s) into helper method (private addTask with different signature). Should help with current work with w-cycles.

44 lines of code changed in 2 files:

ahumphrey 2017-09-19 13:38 Rev.: 57012

Add mutex to postMPIRecvs until we can sort out the foreignVar race condition. This should fix the failing MPM charpy test, and perhaps issues with other components.
Clean up some DWDatabase source while under the hood.

127 lines of code changed in 2 files:

bisaac 2017-09-18 17:55 Rev.: 57004

Switched hybrid momentum discretization upwind approximation. This will break the OFC hybrid test.

243 lines of code changed in 3 files:

allen 2017-09-14 15:50 Rev.: 57003

fixed DW issue with W cycle and correct callswith materials

236 lines of code changed in 1 file:

allen 2017-09-14 15:29 Rev.: 57002

added an exception for W cycle with analysis cause it no worky

9 lines of code changed in 1 file:

allen 2017-09-14 15:27 Rev.: 57001

added material basis for computers and requires

19 lines of code changed in 1 file:

harman 2017-09-14 10:44 Rev.: 57000

Added directory that contains scripts used in scalability studies.

346 lines of code changed in 8 files:

cgritton 2017-09-14 09:55 Rev.: 56999

Updates to compute neumann bc.

87 lines of code changed in 1 file:

harman 2017-09-14 09:44 Rev.: 56998

Reverted Jon's changes.

9645 lines of code changed in 35 files:

allen 2017-09-13 17:15 Rev.: 56997

Added some bullet proofing

14 lines of code changed in 1 file:

allen 2017-09-13 17:05 Rev.: 56996

Corrected the time and dw put with material

22 lines of code changed in 2 files:

derekhar 2017-09-13 12:11 Rev.: 56995

Delete varLabels at the end of the simulation, for scattering-sweeps DO radiation, and the brown-soot model.

8 lines of code changed in 2 files:

harman 2017-09-13 10:55 Rev.: 56994

Reverted SCJMC commit.

1 lines of code changed in 34 files:

scjmc 2017-09-13 02:01 Rev.: 56993

added PhaseField component

2068 lines of code changed in 10 files:

scjmc 2017-09-13 01:59 Rev.: 56992

- added Heat component
- coarse to fine connections made conditional upon #define SKIP_COARSE_TO_FINE_CONNECTIONS
function: HypreDriverSStruct::makeLinearSystem_CC
file: src/CCA/Components/Solvers/AMR/HypreDriverSStruct.cc Please enter the commit message for your changes. Lines starting

7518 lines of code changed in 30 files:

allen 2017-09-12 14:47 Rev.: 56989

minor clean up to remoe additional warnings

3 lines of code changed in 1 file:

allen 2017-09-12 14:41 Rev.: 56988

changed to strict else to remove a warning

2 lines of code changed in 1 file:

allen 2017-09-12 14:30 Rev.: 56987

fixed specified z library

2 lines of code changed in 1 file:

allen 2017-09-12 14:12 Rev.: 56986

added specified z library

8 lines of code changed in 13 files:

harman 2017-09-11 16:34 Rev.: 56984

Code formatting and simplication.
- compiles but doesn't run.

198 lines of code changed in 2 files:

derekhar 2017-09-11 16:17 Rev.: 56983

Add BrownSoot and spectral physics to RT suite. Minor spec edits.

5 lines of code changed in 3 files:

harman 2017-09-11 14:47 Rev.: 56982

Dust off Jennifer VanRij's slip boundary conditions from 2011.

- code compiles but doesn't run.



276 lines of code changed in 2 files:

jthornoc 2017-09-11 11:04 Rev.: 56980

Forgot to add a file.

18 lines of code changed in 1 file:

allen 2017-09-11 10:44 Rev.: 56979

added in new task monitoring feature on a per patch basis

438 lines of code changed in 7 files:

jthornoc 2017-09-11 10:34 Rev.: 56978

Adding flag information.

2 lines of code changed in 1 file:

jthornoc 2017-09-11 10:25 Rev.: 56977

Cleaning up some warnings.

14 lines of code changed in 10 files:

derekhar 2017-09-08 18:35 Rev.: 56975

removed reference to previously deleted fortran files.

0 lines of code changed in 2 files:

derekhar 2017-09-08 17:39 Rev.: 56974

Added support for spectral solvers for Arches-radiation. Support is currently only provided for the sweeping solver. This commit also removed several experimental sweeping approaches.

This commit will break all radiation tests due to the changing of a label name, but otherwise should not change the answers.
Removed some of the unused fortran code.

815 lines of code changed in 19 files:

harman 2017-09-08 11:03 Rev.: 56973

increased size of dialog window

0 lines of code changed in 2 files:

harman 2017-09-08 10:09 Rev.: 56972

Formatting in the output file mem_leak_check.log

Fixed syntax error

cd to $HERE after merging the malloc_stats files in the gold standards dirs.

32 lines of code changed in 3 files:

allen 2017-09-08 10:06 Rev.: 56971

check for patch meshes before patch vars

95 lines of code changed in 1 file:

allen 2017-09-07 19:36 Rev.: 56970

no analysis vars with the first time step

1 lines of code changed in 1 file:

harman 2017-09-07 17:10 Rev.: 56969

Fixed major flaws in how memory gold standards were created.

compare_sus_runs:
- variable create_gs determines whether to copy the original uda and memory files to the GS or
the restart memory files to the GS.

highwater_percent.pl
- Throw an error if the high water value isn't available in either the current RT or the GS.

mem_leak_check
- Throw an error if the merged malloc_stat file has 0 bytes.
- rearrange where the highwater memory plots are generated.

replace_gold_standard
- spacing

runComponentTests
- set the environmental variable COMMON_GROUP in the doTestScripts

runSusTests.py
- Perform memory tests before comparing udas. This allows the malloc_stats file to be copied to the GS
- regression test fails if memory tests fails
- use the variable create_gs (yes_inputfile, yes_retart, no) to control when a GS is generated and
what is copied.


*** Any test that performs a memory check and if the GS:malloc_stats or GS:restart_malloc_stats are missing will fail.

188 lines of code changed in 8 files:

harman 2017-09-07 10:49 Rev.: 56966

cleaned up output formatting

14 lines of code changed in 1 file:

jthornoc 2017-09-06 17:21 Rev.: 56965

* Move the flux initialization up to the timestep_initialize task for the scalar calc.
* Start cleaning up some redundant enums. This needs a little more work.
* Add a little more information to the ArchesTaskDBG helper.
* Fix a bug in the FaceVelocity task wherein the registration for the variables wasn’t passing the time_substep.
* Convert several task scheduling calls in KokkosSolver from individual scheduling to scheduling through the factory in groups.

61 lines of code changed in 8 files:

derekhar 2017-09-05 12:16 Rev.: 56963

Use arches material, instead of a material created solely to satisfy interface requirements.

16 lines of code changed in 2 files:

jthornoc 2017-09-05 09:46 Rev.: 56962

* Expanding the template parameters on the transport to include the flux type. This allows for greater modularity in the transport code.
* Added a function for getting temp or const variables from the DW (in the Arches task interface) so that one can pack or not pack tasks depending on the scenario.

245 lines of code changed in 6 files:

derekhar 2017-09-01 16:22 Rev.: 56959

Including a transparent band, for scenarios with soot/coal particles.

17 lines of code changed in 2 files:

derekhar 2017-09-01 12:21 Rev.: 56958

Extended spectral radiation properties to include soot.

30 lines of code changed in 2 files:

cgritton 2017-09-01 10:29 Rev.: 56957

Removed an output statement that should not have been in the previous commit 56956.

0 lines of code changed in 1 file:

cgritton 2017-09-01 10:20 Rev.: 56956

Updates to the heat equation example and added an AMR version. The AMR version is still in progress.

312 lines of code changed in 6 files:

August 2017 »

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