October 2017 Commit Log

Number of Commits:
94
Number of Active Developers:
12
jthornoc 2017-10-31 13:37 Rev.: 57202

Thread violation.

2 lines of code changed in 2 files:

jthornoc 2017-10-31 13:32 Rev.: 57201

Code cleanup.

251 lines of code changed in 5 files:

derekhar 2017-10-31 10:35 Rev.: 57200

fix race condition in psNox.

6 lines of code changed in 3 files:

derekhar 2017-10-31 10:31 Rev.: 57199

Fixed race condition in ZZNox model.

6 lines of code changed in 2 files:

guilkey 2017-10-30 21:19 Rev.: 57196

Adding a test to cover the "insert_particles" capability.

1 lines of code changed in 1 file:

derekhar 2017-10-30 19:44 Rev.: 57195

Adjust psNox model clipping. Cosmetic changes.

44 lines of code changed in 1 file:

guilkey 2017-10-30 15:09 Rev.: 57194

Replacing the inclined plane sphere test with the "NairnFrictionTest" in which
a normal and tangential force is applied to a block on a plane, with friction
between the two. In addition, turned on a couple of other features, XPIC2 and
pressure stabilization.

1 lines of code changed in 1 file:

guilkey 2017-10-30 14:22 Rev.: 57193

Adding an MPM problem that exercises axisymmetry and affine transformation of
geometry objects.

2 lines of code changed in 1 file:

guilkey 2017-10-30 12:50 Rev.: 57192

Adding further complexity to disks_complex, in particular periodic BCs and
increased run time. In turn, removing the periodic_disks test, and two of the
const_test runs. Additional tests to cover more features coming soon...

4 lines of code changed in 1 file:

harman 2017-10-30 08:39 Rev.: 57190

Merge the malloc_stats file before checking if it exists.

7 lines of code changed in 1 file:

harman 2017-10-27 13:36 Rev.: 57188

LODI test

13 lines of code changed in 1 file:

harman 2017-10-27 13:19 Rev.: 57187

protection against what is coming or already here.


13 lines of code changed in 1 file:

allen 2017-10-27 13:05 Rev.: 57186

reshuffling of code to remove duplicate code

41 lines of code changed in 3 files:

jthornoc 2017-10-26 17:19 Rev.: 57183

* Added a “modifies” for the boundary condition functors. This will allow one to modify other variables besides the variable on which the bc is being applied.
* Added a subgrid injector bc functor. This needs a little work.
* Added a function in UniformGrid to allow one to check for intersections between two distinct points. Previous functionality only allowed the check between a point and infinity.
* Added a thin-wall check when tri geometry is used as an intrusion in Arches.

637 lines of code changed in 16 files:

harman 2017-10-26 16:28 Rev.: 57182

Added comments on compiling with tsan enabled.

3 lines of code changed in 1 file:

harman 2017-10-25 14:45 Rev.: 57179

Updated variable name messages_ -> m_messages.


0 lines of code changed in 2 files:

allen 2017-10-25 13:11 Rev.: 57178

added processor node identification to the proc group, also cleaned up method names

1 lines of code changed in 1 file:

allen 2017-10-25 12:57 Rev.: 57177

added processor node identification to the proc group, also cleaned up method names

0 lines of code changed in 2 files:

allen 2017-10-25 12:48 Rev.: 57176

added processor node identification to the proc group, also cleaned up method names

1130 lines of code changed in 99 files:

allen 2017-10-24 18:15 Rev.: 57175

adding new files for Applications

504 lines of code changed in 3 files:

allen 2017-10-24 17:42 Rev.: 57174

adding new file to replace SimInterface

359 lines of code changed in 2 files:

tsaad 2017-10-24 16:40 Rev.: 57173

Remove an unused function

0 lines of code changed in 1 file:

harman 2017-10-24 14:51 Rev.: 57172

LBwoRegrid: no longer using exact comparison with compareUda. With a load balancer
the dat file summation is non-deterministic.

2 lines of code changed in 1 file:

jas 2017-10-24 12:37 Rev.: 57171

Fix some of the comparison between signed and unsigned integer expressions warnings.

55 lines of code changed in 26 files:

ahumphrey 2017-10-23 16:26 Rev.: 57170

Use default initialization.

2 lines of code changed in 2 files:

allen 2017-10-23 15:53 Rev.: 57169

added missing default

2 lines of code changed in 1 file:

allen 2017-10-23 15:47 Rev.: 57168

fixed centering call

1 lines of code changed in 1 file:

allen 2017-10-23 15:11 Rev.: 57167

added alloc and bad type check

44 lines of code changed in 1 file:

allen 2017-10-23 12:27 Rev.: 57165

changed inner loop index to j

6 lines of code changed in 1 file:

jsutherland 2017-10-20 18:59 Rev.: 57163

Update NSCB hash again to clean up some compiler warnings coming out of there.

1 lines of code changed in 1 file:

jsutherland 2017-10-20 18:27 Rev.: 57162

Used the wrong value in my last change...

1 lines of code changed in 1 file:

jsutherland 2017-10-20 15:51 Rev.: 57160

Updates for change to NSCBC API

5 lines of code changed in 2 files:

harman 2017-10-20 10:54 Rev.: 57159

For microSlip boundary conditions the user has to specify either

<SlipModel type = "FirstOrder"/>
<SlipModel type = "SecondOrder_Deissler"/>
or
<SlipModel type = "SecondOrder_Karniadakis-Beskok"/>

33 lines of code changed in 2 files:

harman 2017-10-19 16:13 Rev.: 57158

randVector()
- Deleted debugging print statements

0 lines of code changed in 2 files:

harman 2017-10-19 13:54 Rev.: 57156

Added a global map for keeping track of which dw the abskg resides in.

// For RMCRT algorithms the absorption coefficient can be required from either the old_dw or
// new_dw depending on if RMCRT:float is specified. On coarse levels abskg _always_ resides
// in the newDW. If RMCRT:float is used then abskg on the fine level resides in the new_dw.


This will change then number of checkpoints and the answers in ARCHES:RMCRT:multibox tests.


79 lines of code changed in 5 files:

harman 2017-10-19 12:52 Rev.: 57155

deleted control char.

0 lines of code changed in 2 files:

derekhar 2017-10-18 19:41 Rev.: 57154

Sweeps no longer will allow or require specifiction of a linear solver for radiation.

14 lines of code changed in 1 file:

harman 2017-10-18 09:31 Rev.: 57152

Added a BUILDBOT list which is the NIGHTLYTESTS - any performance test.

57 lines of code changed in 10 files:

harman 2017-10-17 14:15 Rev.: 57150

coarsen_Q:
- use the fine level dataWarehouse passed into the task when pulling data out. This fixes one bug but there are more...

4 lines of code changed in 1 file:

jbhooper 2017-10-17 12:53 Rev.: 57149

-- Remove unused d_integrator members in Serial/AMR MPM objects.

1 lines of code changed in 2 files:

jbhooper 2017-10-17 11:01 Rev.: 57148

-- Minor comment updates
-- Initial header for a potentiostatic physical boundary condition

115 lines of code changed in 5 files:

derekhar 2017-10-16 17:44 Rev.: 57147

Added new NOx model. This is an extension of ZZ's work.

848 lines of code changed in 5 files:

harman 2017-10-16 14:08 Rev.: 57144

added bulletproofing.
Throw error message if the gold standard malloc stats don't exist.

8 lines of code changed in 2 files:

jthornoc 2017-10-13 16:30 Rev.: 57139

Add STLtoUintahTri.py: A python utility for converting STL files to the tri and pts file needed by Uintah.

This script was contributed by Jagir Hussan, U. of Auckland

93 lines of code changed in 1 file:

jas 2017-10-13 14:42 Rev.: 57138

Replace all instances of StaticArray with std::vector. This has been tested on the RT for all components. It is a drop in replacement. StaticArray is being removed.

515 lines of code changed in 92 files:

harman 2017-10-12 09:09 Rev.: 57137

compiler warnings

39 lines of code changed in 8 files:

jthornoc 2017-10-11 15:51 Rev.: 57136

Add an identifier for domain edge and internal face BCs.
Do not throw an error if the internal face BC is missing.
Autoname internal face BCs.

124 lines of code changed in 6 files:

jthornoc 2017-10-11 15:51 Rev.: 57135

Remove a static function and code cleanup.

617 lines of code changed in 3 files:

jthornoc 2017-10-10 14:40 Rev.: 57132

Warnings.

0 lines of code changed in 2 files:

jthornoc 2017-10-10 14:40 Rev.: 57131

Put PressureBC in the ArchesCore namespace.

6 lines of code changed in 5 files:

ohdiazi 2017-10-10 13:59 Rev.: 57130

fixing names

6 lines of code changed in 1 file:

ohdiazi 2017-10-10 13:59 Rev.: 57129

filter type renamed

0 lines of code changed in 6 files:

ohdiazi 2017-10-10 13:59 Rev.: 57127

fixing turbulence factory for dyn smag model, arches_spec

3 lines of code changed in 3 files:

ohdiazi 2017-10-10 13:59 Rev.: 57125

ups files has been updated
Please enter the commit message for your changes. Lines starting

0 lines of code changed in 2 files:

ohdiazi 2017-10-10 13:59 Rev.: 57123

Label was deleted...

0 lines of code changed in 1 file:

ohdiazi 2017-10-10 13:59 Rev.: 57122

updated source terms

4 lines of code changed in 4 files:

jthornoc 2017-10-10 13:54 Rev.: 57121

Undo test commit from rt machine with git.

0 lines of code changed in 1 file:

jthornoc 2017-10-10 13:49 Rev.: 57120

Another test commit.

1 lines of code changed in 1 file:

jas 2017-10-10 11:00 Rev.: 57117

Uncomment included libraries to get build on mac.

13 lines of code changed in 1 file:

jthornoc 2017-10-10 10:55 Rev.: 57116

Input file additions and updates.

Get the dynamic model registering with the factory.

Need to fix the filter spec on the next commit.

0 lines of code changed in 2 files:

jas 2017-10-10 10:07 Rev.: 57114

Uncomment included libraries to get build on mac.

13 lines of code changed in 1 file:

jthornoc 2017-10-09 22:40 Rev.: 57111

Cleaning up spec and input files.

11 lines of code changed in 3 files:

jthornoc 2017-10-09 21:57 Rev.: 57110

Remove the test commit.

0 lines of code changed in 1 file:

jthornoc 2017-10-09 16:50 Rev.: 57108

Test commit.

1 lines of code changed in 1 file:

jthornoc 2017-10-09 16:44 Rev.: 57107

Warning.

12 lines of code changed in 1 file:

jthornoc 2017-10-09 16:44 Rev.: 57106

Adding missing files.

162 lines of code changed in 2 files:

jthornoc 2017-10-09 16:44 Rev.: 57105

Adding a few initializations.
Fix warnings.

252 lines of code changed in 12 files:

jthornoc 2017-10-09 16:44 Rev.: 57104

Cleaning up warnings and adding Shunn 1D mms.

634 lines of code changed in 13 files:

jthornoc 2017-10-09 16:44 Rev.: 57103

Divide by dt for init condition causing NaNs since dt = 0.

1 lines of code changed in 1 file:

jthornoc 2017-10-09 16:44 Rev.: 57102

Update boundary conditions including adding MMS BCs.

259 lines of code changed in 1 file:

jthornoc 2017-10-09 16:44 Rev.: 57100

Fix a bug in the turbulence models and add MMS for momentum.

24 lines of code changed in 5 files:

jthornoc 2017-10-09 16:44 Rev.: 57099

Merging Oscar's bug fixes for the transport eqns.

227 lines of code changed in 16 files:

jthornoc 2017-10-09 16:44 Rev.: 57098

Updating input files, some minor naming changes, and spec.

12 lines of code changed in 6 files:

jthornoc 2017-10-09 16:43 Rev.: 57097

Dynamic model implemenation. More commits to follow.

Also added a taskController container.

1374 lines of code changed in 18 files:

ahumphrey 2017-10-06 13:52 Rev.: 57094

OK, actually fix build_kokkos script (trunk).

1 lines of code changed in 1 file:

harman 2017-10-06 13:49 Rev.: 57093

Removed the stretched grid code.

29 lines of code changed in 8 files:

jthornoc 2017-10-06 10:47 Rev.: 57091

Remove a pow and if statement inside a tight loop.

24 lines of code changed in 1 file:

harman 2017-10-06 10:02 Rev.: 57090

RMCRT.cc
sched_computeSource() DataOnion section
- reverse the order in which levels coarsen variables. You can't coarsen a level until
the finer level has been populatd. --Derek

Ray.cc
added printSchedule() statement.

5 lines of code changed in 2 files:

jthornoc 2017-10-05 16:50 Rev.: 57087

OCD Cleanup of the deposition rate code including:
removing redundant calculations
using ternary statements over if statements
spacing, etc.

This changes answers in the rate deposition probabilities and fluxes,
but should not change the actual deposition rates.

302 lines of code changed in 4 files:

jas 2017-10-05 15:07 Rev.: 57086

Remove empty directory.

0 lines of code changed in 1 file:

jas 2017-10-05 14:59 Rev.: 57085

Remove empty directory.

0 lines of code changed in 1 file:

jas 2017-10-05 13:10 Rev.: 57084

Remove empty file.

0 lines of code changed in 1 file:

allen 2017-10-05 13:10 Rev.: 57083

fixed strncpy

14 lines of code changed in 1 file:

allen 2017-10-05 12:02 Rev.: 57081

added proc node to the in-situ

51 lines of code changed in 3 files:

allen 2017-10-05 10:11 Rev.: 57080

added node id

83 lines of code changed in 4 files:

ahumphrey 2017-10-04 17:22 Rev.: 57077

Fix build_kokkos script

1 lines of code changed in 1 file:

ahumphrey 2017-10-04 16:32 Rev.: 57076

Keep SimulationTime confined to that which is parsed from the ProblemSpec.
Components use SimulationState::getElapsedSimTime() for now. This info will soon be packaged into a SoleVariable and placed into the DW for tasks that need this info.

0 lines of code changed in 3 files:

zhouminmin 2017-10-04 13:26 Rev.: 57075

Optimize the rate deposition model and make it more computational efficiency

52 lines of code changed in 2 files:

ahumphrey 2017-10-03 17:19 Rev.: 57069

Add simulation time to SimulationTime object. Arches needs this for certain tasks.
Curious this was not available previously anywhere outside of the SimController.

182 lines of code changed in 9 files:

harman 2017-10-03 14:08 Rev.: 57063

Level.cc
- disable non-cubic checks and bulletproofing when the domain is cubic

OnDemandDataWarehouse
- Enable bulletproofing when domain is non-cubic instead of all the time.

8 lines of code changed in 2 files:

harman 2017-10-03 11:37 Rev.: 57059

More descriptive messages during script execution.

0 lines of code changed in 2 files:

ahumphrey 2017-10-02 18:58 Rev.: 57058

Reinstate taskGraphTimer. Somehow this got replaced with low-res clock() timer?

2 lines of code changed in 1 file:

harman 2017-10-02 13:39 Rev.: 57057

setIsNonCubicLevel()
- increased the amount of fuzz from 5* DBL_EPSILON -> 100* DBL_EPSION in the conditional

if ( std::fabs( patchesVol - levelVol ) > fuzz ) {
}

2 lines of code changed in 1 file:

jas 2017-10-02 11:42 Rev.: 57056

Remove reference to ShareAssignParticleVariable.h, and remove empty tracker/.

9 lines of code changed in 17 files:

September 2017 »

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