February 2018 Commit Log

Number of Commits:
112
Number of Active Developers:
13
bisaac 2018-02-28 18:25 Rev.: 57902

Updated the additional log function for VUQ in WallHT. This impacts 1GW_em_tc and 1GW_pokluda in the noise.

3 lines of code changed in 1 file:

allen 2018-02-28 15:08 Rev.: 57901

switched the path to usse the object code path and fixed maxNodes

13 lines of code changed in 2 files:

ahumphrey 2018-02-28 13:11 Rev.: 57900

Remove the machinery for shared DetailedTasks object. (1) this no longer makes sense in a multi-task graph environement, as teh whole point of multile primary graphs is that the DetailedTasks set will differ, (2) turns out this original "enhancement" and all supporting code was not even being excercised (for many years now), and (3) when actually enabled, any benifit was negligible relative to the overall complexity it introduced, even for the shared scrub table.

Many other refactorings, cleanups and other cosmetic changes, all as part of the next wave of task graph optimizations.

524 lines of code changed in 16 files:

harman 2018-02-28 12:18 Rev.: 57899

The builbot tests now includes RMCRT tests

1 lines of code changed in 1 file:

bisaac 2018-02-28 11:35 Rev.: 57898

Added uncertainity parameter for ash thermal conductivity.

14 lines of code changed in 2 files:

allen 2018-02-28 11:26 Rev.: 57897

added additional vars for teh machine mapping layout

58 lines of code changed in 3 files:

harman 2018-02-28 09:41 Rev.: 57896

Updated from helpers.runSusTests list.

1 lines of code changed in 1 file:

harman 2018-02-27 19:10 Rev.: 57895

modUPS.py
- modUPS2()
User can either update an xml value or delete an xml section
# usage:
# mod_ups = modUPS2( inputDirectory, <ups file>, [ (<operation>, "xmlpath : value" )]
# where: operation = "update" or "delete"

- modUPS() & modUPS2()
consolidated redundant code.

ICE:
- Added 5 level advect problem.
- Added 5 level advect performance test
- Fixed glaring bug on buildbot tests, NIGHTLYTESTS = NIGHTLYTESTS + AMRTESTS + DIFFUSION + LODI



112 lines of code changed in 3 files:

derekhar 2018-02-27 18:23 Rev.: 57894

Fixed bug when running spectral and no soot.

23 lines of code changed in 5 files:

allen 2018-02-27 16:53 Rev.: 57893

additional clean for the machine layout

191 lines of code changed in 3 files:

jthornoc 2018-02-27 15:47 Rev.: 57892

Replacing a string with an enum for the particle names->roles.
Cleaning up a warning or two.

219 lines of code changed in 39 files:

allen 2018-02-27 15:12 Rev.: 57891

added ash machine layout

575 lines of code changed in 1 file:

allen 2018-02-27 15:11 Rev.: 57890

fix conflict

0 lines of code changed in 1 file:

allen 2018-02-27 15:09 Rev.: 57889

addedcheck for specific machine files

38 lines of code changed in 3 files:

allen 2018-02-27 15:08 Rev.: 57888

added ash machine layout

711 lines of code changed in 1 file:

ohdiazi 2018-02-27 14:53 Rev.: 57887

adding 2 reactions

72 lines of code changed in 2 files:

allen 2018-02-27 13:38 Rev.: 57886

Added support for the domains and vars on a machine mesh

406 lines of code changed in 2 files:

allen 2018-02-27 13:37 Rev.: 57885

fixed a system specific issue where the counter is incremented before it is used

8 lines of code changed in 1 file:

jthornoc 2018-02-26 23:57 Rev.: 57884

Grouping DQMOM eqns by environment.
Cleaning up some warnings.

113 lines of code changed in 4 files:

ohdiazi 2018-02-26 23:12 Rev.: 57883

deleting 12

7 lines of code changed in 2 files:

harman 2018-02-26 18:44 Rev.: 57882

- Removed tabs
- Added more descriptive exception messages.
- Name changes:
nameoftest() -> getTestName()
input() -> getUpsFile()
num_processes -> getMPISize()
testOS() -> getTestOS()
userFlags() -> getTestFlags()
ALGO -> application

Fixed setInputsDir() and simplified getInputsDir()

BugFix:
For performance tests pass modUPS() the local patch so it will modify a local
copy of the input file.



127 lines of code changed in 4 files:

allen 2018-02-26 16:58 Rev.: 57881

removed warnings

29 lines of code changed in 3 files:

allen 2018-02-26 16:43 Rev.: 57880

added path

16 lines of code changed in 3 files:

allen 2018-02-26 15:54 Rev.: 57879

added passing of the proc group

1 lines of code changed in 1 file:

allen 2018-02-26 15:54 Rev.: 57878

added machine specific layout

423 lines of code changed in 3 files:

allen 2018-02-26 15:53 Rev.: 57877

added storage for the processor name

8 lines of code changed in 2 files:

ohdiazi 2018-02-26 14:57 Rev.: 57876

matrix inversion

26 lines of code changed in 1 file:

ohdiazi 2018-02-26 14:57 Rev.: 57875

space

30 lines of code changed in 1 file:

ohdiazi 2018-02-26 14:57 Rev.: 57874

John Holmen's optimization: 6 and part of 12

62 lines of code changed in 2 files:

ohdiazi 2018-02-26 14:57 Rev.: 57873

John Holmen's optimizations's: 1, 3, 4, 7

153 lines of code changed in 2 files:

jsutherland 2018-02-24 17:21 Rev.: 57872

Update due to ExprLib API change. See ExprLib hash 076e7466aa3313464bbe616c11544b87bcd192d0

60 lines of code changed in 4 files:

harman 2018-02-23 18:52 Rev.: 57871

Fixed a multipatch bug in the face centered velocity.

7 lines of code changed in 1 file:

jthornoc 2018-02-23 17:46 Rev.: 57870

Implementing the fourth order differencing scheme. This still needs
some work - including adding BCs, accounting for intrusions, etc...
Only 'working' in the K-momentum solver.

276 lines of code changed in 11 files:

allen 2018-02-21 18:49 Rev.: 57862

changed the InfoMapper to be a full map class so that the key values can be random

108 lines of code changed in 9 files:

bisaac 2018-02-21 18:40 Rev.: 57861

Fixed a bug which adjust emissivity in limiting cases. This will change the answers for 1GW_pokluda.

25 lines of code changed in 1 file:

allen 2018-02-21 18:31 Rev.: 57860

removed the DataArchiver from grim path to perdition

11 lines of code changed in 2 files:

zhouminmin 2018-02-21 18:24 Rev.: 57859

Updating sigma turbulent viscosity model with wall bc, it doesnot break RT

169 lines of code changed in 2 files:

ohdiazi 2018-02-21 16:47 Rev.: 57858

WALE model for production code

24 lines of code changed in 2 files:

harman 2018-02-21 15:16 Rev.: 57857

Added python script to find "orphan" gold standards.

61 lines of code changed in 1 file:

allen 2018-02-21 14:16 Rev.: 57856

I added additional access methods to the InfoMapper which in turn require an Enum for the template

229 lines of code changed in 6 files:

derekhar 2018-02-21 11:57 Rev.: 57855

Removed table search function that is no longer used.

1 lines of code changed in 2 files:

ohdiazi 2018-02-21 09:31 Rev.: 57854

delete Type from VariableHelper

21 lines of code changed in 4 files:

ohdiazi 2018-02-21 09:31 Rev.: 57852

PT: packed time variable

74 lines of code changed in 2 files:

ohdiazi 2018-02-21 09:31 Rev.: 57851

fixing packed isotropic test

117 lines of code changed in 8 files:

ahumphrey 2018-02-20 19:47 Rev.: 57850

Some cleanup and refactoring before another round of task graph compile optimizations:

d_name --> m_name

Note, the lab convention (which I've adopted) is:

m_name (member)
s_name (static)
g_name (global)
t_name (thread-local TLS)

161 lines of code changed in 5 files:

derekhar 2018-02-20 17:32 Rev.: 57849

logic that became redundant by invoking full - spatial scheduling was removed.

2 lines of code changed in 1 file:

bisaac 2018-02-18 22:49 Rev.: 57847

This is a commit from Oscar. It is fixing an issue related to uninitialized variables. No impact on RT.

8 lines of code changed in 2 files:

harman 2018-02-16 15:35 Rev.: 57846

cleaned out deleted functions from the import lines

2 lines of code changed in 2 files:

bisaac 2018-02-16 15:28 Rev.: 57845

Turned deposition back on the walls. This will break 1GW tests and mass_and_energy test.

2 lines of code changed in 1 file:

harman 2018-02-16 15:25 Rev.: 57844

Run make clean, removing the stamp directory, after all the timesteps have been tarred. Previously,
the stamp directory was removed before all processors were finished.

Added bullet proofing to catch when a uda directory name contains either a ":" or a whitespace,
Make doesn't like that.

22 lines of code changed in 2 files:

ohdiazi 2018-02-16 12:16 Rev.: 57842

deleting for density task, a temp variable is used .

1 lines of code changed in 4 files:

ohdiazi 2018-02-16 12:16 Rev.: 57840

fixing packed turbulence case

77 lines of code changed in 5 files:

ohdiazi 2018-02-16 12:16 Rev.: 57839

commeting out changes in DS.

7 lines of code changed in 4 files:

ohdiazi 2018-02-16 12:16 Rev.: 57838

BC for smag dynamic model

336 lines of code changed in 6 files:

ohdiazi 2018-02-16 12:16 Rev.: 57837

save filter MM and ML

10 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:16 Rev.: 57836

DS v2 : sij is filtered instead of rho*ui

1158 lines of code changed in 6 files:

ohdiazi 2018-02-16 12:16 Rev.: 57835

recoding filter

141 lines of code changed in 7 files:

ohdiazi 2018-02-16 12:16 Rev.: 57834

density for filter

0 lines of code changed in 2 files:

ohdiazi 2018-02-16 12:16 Rev.: 57833

adding a special filter for density

121 lines of code changed in 6 files:

ohdiazi 2018-02-16 12:16 Rev.: 57832

rho*u is computed and filter

299 lines of code changed in 5 files:

ohdiazi 2018-02-16 12:16 Rev.: 57831

filter operation

73 lines of code changed in 6 files:

ohdiazi 2018-02-16 12:16 Rev.: 57830

BC in dynamic model

77 lines of code changed in 5 files:

ohdiazi 2018-02-16 12:16 Rev.: 57829

add print

1 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:16 Rev.: 57828

adding BC

28 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:16 Rev.: 57827

psNox

1 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:16 Rev.: 57826

no-clipping

9 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:16 Rev.: 57825

fixing units

6 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57824

adding adel sarofim reaction

4 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57823

calling w from DW

26 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57822

fixing r 1

3 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57821

adding Derek's patch

65 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57820

using filterMM and filterML instead of MM and ML

6 lines of code changed in 1 file:

ohdiazi 2018-02-16 12:15 Rev.: 57819

initialization for turbulence factory

22 lines of code changed in 3 files:

ohdiazi 2018-02-16 12:15 Rev.: 57818

new dynamic model for production code

91 lines of code changed in 6 files:

harman 2018-02-15 18:04 Rev.: 57817

Eliminated some confusing code and logic:
changed : setGeneratingGoldStandards() -> setInputsDir()
changed : generatingGoldStandards() -> getInputsDir()

Cleaned import statements for all component.py files, removed unnecessary conditional block.

44 lines of code changed in 11 files:

jthornoc 2018-02-15 15:53 Rev.: 57813

Replace the old DQMOM-no-inversion with an updated, simpler method,
which short circuits DQMOM.cc.
The <LinearSolver> section should only be specified now in the case where one actually
wants to perform the DQMOM inversion.

* ParticleConstant model now produces *_(env#) AND *_qn(env#) variables.
* Fixed some warnings.
* Some general cleanup
* Updated the kokkos DQMOM tests. This changes the answers for the two Char tests.

363 lines of code changed in 21 files:

zhouminmin 2018-02-15 12:54 Rev.: 57810

Updated the ash viscosity based on Factsage calculation and break 1GW tests

42 lines of code changed in 2 files:

milo 2018-02-15 12:15 Rev.: 57809

added Black Thunder/Powder River coefficients

9 lines of code changed in 1 file:

harman 2018-02-15 11:44 Rev.: 57808

Removed duplicate copy command that shouldn't be called if there are no restarts

1 lines of code changed in 1 file:

milo 2018-02-14 18:23 Rev.: 57806

new emissivity model with correct regression parameters for specific coals: Illinois, Indonesian, ND Lignite, sufco

42 lines of code changed in 1 file:

jthornoc 2018-02-14 11:16 Rev.: 57805

This allows the arches task to access the *DW if needed.

27 lines of code changed in 2 files:

jthornoc 2018-02-14 11:16 Rev.: 57804

Pass the bchelper to the utility factory.

6 lines of code changed in 1 file:

jthornoc 2018-02-14 11:16 Rev.: 57803

Adding the start of the replacement for the DQMOM-no-invert.

169 lines of code changed in 3 files:

ahumphrey 2018-02-13 17:58 Rev.: 57802

Fix broken PAPI support.

20 lines of code changed in 4 files:

harman 2018-02-13 16:58 Rev.: 57801

-Added DOUT statements.
-Added code to fill in the extra-extra cells at the CFI of fine level patches. (Disabled).


220 lines of code changed in 2 files:

bisaac 2018-02-12 17:59 Rev.: 57799

Added regression test. For now sintering model.

3 lines of code changed in 1 file:

bisaac 2018-02-12 17:21 Rev.: 57798

Added the rest of the new Pokluda sintering model. Still not covered under RT.

221 lines of code changed in 3 files:

derekhar 2018-02-11 11:22 Rev.: 57795

fixed bug over-limiting radiative heat transfer to particles. Also properly checks for radiateAtGasTemp flag.

7 lines of code changed in 2 files:

jholmen 2018-02-09 18:39 Rev.: 57792

* Moved declarations inside the parallel pattern.
* Cleaned up whitespace and formatting.

769 lines of code changed in 1 file:

jholmen 2018-02-09 16:02 Rev.: 57790

* Removed Kokkos-specific bulletproofing on the Unified Scheduler.

0 lines of code changed in 2 files:

bisaac 2018-02-09 14:01 Rev.: 57789

This commmit changes the units for the saved Q_convection. This shouldn't change any answers other than heat_qni_Qconv variables.

5 lines of code changed in 1 file:

harman 2018-02-08 17:02 Rev.: 57788

Revive the piston validation problem.
- overhauled the comparison script
- added nightly regression tests
- increase resolution and patch count
* Results look good at this point.


81 lines of code changed in 3 files:

dav 2018-02-07 18:07 Rev.: 57787

Cosmetic white space cleanup

58 lines of code changed in 1 file:

harman 2018-02-07 15:20 Rev.: 57785

Corrected task name.

1 lines of code changed in 1 file:

jholmen 2018-02-07 14:36 Rev.: 57784

* Removed Uintah::parallel_reduce.
* Added Uintah::parallel_reduce_min.
* Added Uintah::parallel_reduce_sum.
* Replaced use of Uintah::parallel_reduce with Uintah::parallel_reduce_sum.
* Replaced use of Uintah::parallel_for within KokkosSolver::computeStableTimeStep with Uintah::parallel_reduce_min.
* Cleaned up whitespace and formatting.

This commit extends Uintah's parallel patterns to support minimum reductions on scalar data.

295 lines of code changed in 8 files:

allen 2018-02-07 13:21 Rev.: 57783

added comments and set the default tab

67 lines of code changed in 2 files:

allen 2018-02-07 11:28 Rev.: 57782

added support to load extra patches

109 lines of code changed in 9 files:

allen 2018-02-07 10:27 Rev.: 57781

added support for extra patches and cleanup

296 lines of code changed in 3 files:

allen 2018-02-06 19:41 Rev.: 57780

removed tabs

339 lines of code changed in 9 files:

allen 2018-02-06 19:38 Rev.: 57779

added support for reading AMR without extra cells

192 lines of code changed in 3 files:

allen 2018-02-06 17:37 Rev.: 57778

changed the domina boundary and nesting to callback functions

204 lines of code changed in 3 files:

allen 2018-02-06 17:35 Rev.: 57777

changed command line flag

3 lines of code changed in 1 file:

derekhar 2018-02-06 16:57 Rev.: 57776

Fix failing arches debug tests.

Moral of the story: don't add a reference unless you want to delete the object yourself, in which case you must also call removeReference();

2 lines of code changed in 1 file:

jthornoc 2018-02-06 16:11 Rev.: 57775

Cleaning out ParticleTools and moving coal-specific functions to
CoalHelper.

1048 lines of code changed in 49 files:

guilkey 2018-02-05 19:35 Rev.: 57773

Piston validation problem now runs with rmpmice, gives reasonable looking
results.

9 lines of code changed in 1 file:

guilkey 2018-02-04 18:36 Rev.: 57767

Adding a script to generate DIW foam pads. Reorg on the include files in
MPMMaterial.

167 lines of code changed in 2 files:

derekhar 2018-02-04 11:45 Rev.: 57766

Delete patchset used to schedule spatial task.

27 lines of code changed in 1 file:

harman 2018-02-02 16:58 Rev.: 57764

Removed tabs.
Variable name change m->matrix -- A. Gaia

0 lines of code changed in 4 files:

harman 2018-02-02 15:33 Rev.: 57763

Output level index.

2 lines of code changed in 1 file:

derekhar 2018-02-02 15:07 Rev.: 57762

Fully adopt spatial scheduling for Arches-sweeps.

87 lines of code changed in 2 files:

allen 2018-02-02 11:29 Rev.: 57760

updated in-situ check

1 lines of code changed in 1 file:

jholmen 2018-02-01 15:36 Rev.: 57758

* Output from the 0th processor only.

1 lines of code changed in 1 file:

January 2018 »

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