September 2018 Commit Log

Number of Commits:
98
Number of Active Developers:
9
jthornoc 2018-09-28 15:53 Rev.: 58732

Expose more information regarding the variable registration process for
BCs.

55 lines of code changed in 3 files:

harman 2018-09-28 15:30 Rev.: 58731

Added file output for the various variable types

Added CC_position std::vector to the aveVar class. It's used to output position of each planar average.

Started polishing.

136 lines of code changed in 2 files:

allen 2018-09-28 12:10 Rev.: 58730

referenced the base class

2 lines of code changed in 1 file:

allen 2018-09-28 12:08 Rev.: 58729

stat clean up

85 lines of code changed in 1 file:

allen 2018-09-28 12:06 Rev.: 58728

added example of stats for RMCRT

88 lines of code changed in 5 files:

allen 2018-09-28 11:47 Rev.: 58727

added the ability to count the entries

62 lines of code changed in 1 file:

derekhar 2018-09-28 11:02 Rev.: 58726

recomment line from previous commit.

1 lines of code changed in 1 file:

bisaac 2018-09-28 09:32 Rev.: 58725

Fixed declaration error with k_ash_uncertain variable. This doesn't impact regression tests but will impact VUQ runs with this parameter.

1 lines of code changed in 1 file:

harman 2018-09-27 17:26 Rev.: 58723

Added data structure to hold the planar averages of various data types (varLabels).

Add restartInitialize task



264 lines of code changed in 2 files:

derekhar 2018-09-27 12:46 Rev.: 58721

Stripped out arches labels from custom solve, so it can be used in kokkosSolver.

41 lines of code changed in 5 files:

jthornoc 2018-09-26 15:21 Rev.: 58719

More reworking of the print statements.

75 lines of code changed in 5 files:

jthornoc 2018-09-26 13:36 Rev.: 58717

Better print statements.

78 lines of code changed in 6 files:

harman 2018-09-26 10:59 Rev.: 58716

Set env variable to fix issue with dialog running on certain terminals.

8 lines of code changed in 9 files:

allen 2018-09-25 14:48 Rev.: 58714

changed check to reporting if output or checkpoint was written

4 lines of code changed in 1 file:

harman 2018-09-25 14:07 Rev.: 58713

Updated names of try servers.


4 lines of code changed in 1 file:

allen 2018-09-25 13:50 Rev.: 58712

Added comments regarding the side affect of writing out of sync output/checkpoint files

85 lines of code changed in 3 files:

allen 2018-09-25 12:19 Rev.: 58711

set time values to defaults, and accounted for time step 0

0 lines of code changed in 4 files:

allen 2018-09-24 10:50 Rev.: 58709

made the scrubbing of saved vars optional

24 lines of code changed in 4 files:

allen 2018-09-21 16:01 Rev.: 58706

corrected mesh name

1 lines of code changed in 1 file:

allen 2018-09-21 15:57 Rev.: 58705

added comments and corrected mesh name

8 lines of code changed in 1 file:

allen 2018-09-20 16:52 Rev.: 58700

additional comments

3 lines of code changed in 1 file:

allen 2018-09-20 16:49 Rev.: 58699

added the ability to save the old data warehouse

346 lines of code changed in 7 files:

jthornoc 2018-09-20 10:23 Rev.: 58697

Better DOUT print statement.

29 lines of code changed in 1 file:

jthornoc 2018-09-20 09:34 Rev.: 58695

Cleaning up print statements. For some reason, using a stringstream
results in weird output from the code rather than putting the message
inline in the DOUT function.

59 lines of code changed in 1 file:

allen 2018-09-20 08:15 Rev.: 58694

removed setting of all time related components except the max

4 lines of code changed in 1 file:

allen 2018-09-20 07:21 Rev.: 58693

changed default to zero so to be ignored

1 lines of code changed in 1 file:

allen 2018-09-20 07:20 Rev.: 58692

added check to ignore conditional if the value is zero

8 lines of code changed in 1 file:

jthornoc 2018-09-19 17:32 Rev.: 58689

Cleanup of variable names and converting to DOUT for debug stream.

862 lines of code changed in 201 files:

harman 2018-09-19 13:19 Rev.: 58686

Fixed compilation error.

3 lines of code changed in 1 file:

harman 2018-09-19 13:11 Rev.: 58685

Stripped out old min/max variables

Added code to perform the averaging in either the XY, XY or YZ plane orientations.

Added code to create subDirectories below the rootPath and files. No output to the files yet.





237 lines of code changed in 2 files:

allen 2018-09-19 09:45 Rev.: 58684

removed the start sim time and sim to wall time stats. Added friend class to the app. interface

95 lines of code changed in 8 files:

jthornoc 2018-09-18 15:33 Rev.: 58681

Moving to DOUT and adding a few new print statements for clarity.

59 lines of code changed in 1 file:

allen 2018-09-17 16:12 Rev.: 58679

added application runtime stats example

115 lines of code changed in 10 files:

allen 2018-09-17 16:11 Rev.: 58678

removed the recompile flag from app common and restructured the calls

44 lines of code changed in 8 files:

allen 2018-09-17 16:10 Rev.: 58677

separated the runtime and application stat reporting

106 lines of code changed in 1 file:

harman 2018-09-14 14:48 Rev.: 58673

Added new analysis module to compute the instanteous spatial average of a VarLabel over a plane. This is
just a copy of the MinMax module with some name changes.

1046 lines of code changed in 4 files:

harman 2018-09-14 09:46 Rev.: 58672

Changed directory name orderAccuracy -> parametricStudies
- updated scripts, makefile targets and variable names to reflect the name change.

861 lines of code changed in 30 files:

ahumphrey 2018-09-13 18:38 Rev.: 58671

Simulation controllers: DebugStream --> Dout
Some misc cleanup and output formatting.

76 lines of code changed in 1 file:

harman 2018-09-13 17:12 Rev.: 58670

Studies that use slurm batch scheduler is working. Further testing is needed. Still need to add
post processing capabilities.

0 lines of code changed in 12 files:

jholmen 2018-09-13 15:27 Rev.: 58667

* Cleaned up TaskDBG use in Kokkos-OpenMP Scheduler.

0 lines of code changed in 4 files:

jholmen 2018-09-13 12:40 Rev.: 58666

* Bulletproof Kokkos-OpenMP Scheduler TaskDBG for non-Kokkos builds.

17 lines of code changed in 1 file:

jholmen 2018-09-13 12:20 Rev.: 58665

* Added support for the TaskDBG SCI_DEBUG environment variable within the Kokkos-OpenMP Scheduler.

12 lines of code changed in 1 file:

mcconnell 2018-09-12 23:45 Rev.: 58662

cleanup

0 lines of code changed in 2 files:

guilkey 2018-09-12 15:59 Rev.: 58659

Removing this file, moving to a different location in the source tree.

0 lines of code changed in 1 file:

allen 2018-09-12 14:42 Rev.: 58657

removed releasePort call as it is handled in the ApplicationCommon

0 lines of code changed in 1 file:

ahumphrey 2018-09-11 17:31 Rev.: 58651

Repair Gpertools support.

6 lines of code changed in 3 files:

ahumphrey 2018-09-11 16:35 Rev.: 58650


Remove PAPI support.
This direct support is no longer necessary, as almost all profiling tools sit on top of PAPI. No sense in us maintaining code that's avialble through professional tools.

171 lines of code changed in 57 files:

harman 2018-09-11 16:06 Rev.: 58649

Started adding ability for batch scripts to be submitted. A template batch script is modified for
each test and submitted to the batch queue. Untested at this point.

265 lines of code changed in 9 files:

ahumphrey 2018-09-11 15:06 Rev.: 58648

Complete the removal of RunLengthEncoder.

184 lines of code changed in 6 files:

harman 2018-09-11 13:04 Rev.: 58646

Replaced environ['output_html'] with getenv( 'output_html' ). The environmental var output_html
may not exist , which is fine. getenv() returns "none" if environmental var isn't found. environ{} throws
an exception.



2 lines of code changed in 1 file:

mcconnell 2018-09-11 11:30 Rev.: 58645

Removed some code that resulted in a bug when tar and soot are enabled.

0 lines of code changed in 4 files:

mcconnell 2018-09-11 11:30 Rev.: 58644

(re)made changes necessary after rebasing.

31 lines of code changed in 5 files:

mcconnell 2018-09-11 11:30 Rev.: 58643

density-weighted scalars at STATE_NP1 are now cleaved from children and scalar BCs are now applied to STATE_NP1 rather than STATE_N when the low-Mach fluid model is implemented. Cleaving fixes an issue where the density solver would hang ro fail due to NaNs in ghost cells when the domain had more than one patch.

19 lines of code changed in 3 files:

mcconnell 2018-09-11 11:30 Rev.: 58642

Revert "Tag"

This reverts commit 503515f49b7bd2753264361a5fe2ef48a933d9f1.

2 lines of code changed in 1 file:

mcconnell 2018-09-11 11:30 Rev.: 58641

Tag

1 lines of code changed in 1 file:

mcconnell 2018-09-11 11:30 Rev.: 58640

fixed a few issues with applying boundary conditions for scalars

2 lines of code changed in 1 file:

mcconnell 2018-09-11 11:30 Rev.: 58639

exact MMS mixture fraction is now calculated if ForceOnGraph is applied to f_exact. Diffusion coefficient ofr 2D MMS now uses the correct density (STATE_NP1 instead of STATE_N). This might need to be reverted in order to not diff with the varden-2D-mms test.

0 lines of code changed in 2 files:

mcconnell 2018-09-11 11:30 Rev.: 58638

Allow for calculation VarDenMMSOscillatingMixFracSrc at time corresponding to STATE_NP1

0 lines of code changed in 4 files:

mcconnell 2018-09-11 11:30 Rev.: 58636

The low-mach algorithm can now be run with a turbulence model again. Low-mach + weak scalar transport also runs again.

105 lines of code changed in 3 files:

mcconnell 2018-09-11 11:30 Rev.: 58635

added the option to specify a suffix for scalar diffusive flux tags.

0 lines of code changed in 4 files:

mcconnell 2018-09-11 11:30 Rev.: 58634

fixed another bug. silly me.

0 lines of code changed in 2 files:

mcconnell 2018-09-11 11:30 Rev.: 58633

fixed a bug I introduced at some point.

5 lines of code changed in 2 files:

mcconnell 2018-09-11 11:30 Rev.: 58632

Some work getting turbulent low-mach capability fixed

38 lines of code changed in 10 files:

mcconnell 2018-09-11 11:29

fixed a bug

4 lines of code changed in 2 files:

mcconnell 2018-09-11 11:29 Rev.: 58629

remove unneeded variable

0 lines of code changed in 1 file:

mcconnell 2018-09-11 11:29 Rev.: 58627

Changes required for running the 2D-mms variable density test.

15 lines of code changed in 1 file:

mcconnell 2018-09-11 11:29 Rev.: 58626

cleanup

5 lines of code changed in 3 files:

mcconnell 2018-09-11 11:29 Rev.: 58625

Changes made for temporal order verification

13 lines of code changed in 1 file:

mcconnell 2018-09-11 11:29 Rev.: 58624

Removing star quantities for weak scalar transport for low-Mach model... not done yet.

14 lines of code changed in 7 files:

mcconnell 2018-09-11 11:29 Rev.: 58623

Removed more star stuff. Yet more to come.

25 lines of code changed in 2 files:

mcconnell 2018-09-11 11:29 Rev.: 58622

More cleanup.

51 lines of code changed in 11 files:

mcconnell 2018-09-11 11:29 Rev.: 58620

Cleanup

25 lines of code changed in 1 file:

mcconnell 2018-09-11 11:29 Rev.: 58619

"star" versions of diffusive flux expressions are no more.

116 lines of code changed in 3 files:

mcconnell 2018-09-11 11:28 Rev.: 58618

A reference to persistentFields is now a member of ScalarTransportEquation.

90 lines of code changed in 9 files:

mcconnell 2018-09-11 11:28 Rev.: 58617

removed density* from compressible algorithm

0 lines of code changed in 2 files:

mcconnell 2018-09-11 11:28 Rev.: 58616

the flow treatment is given directly to TransportEquation, negating the need to pass the 'isConstDensity" bool

35 lines of code changed in 35 files:

mcconnell 2018-09-11 11:28 Rev.: 58615

more cleanup

51 lines of code changed in 8 files:

mcconnell 2018-09-11 11:28 Rev.: 58614

cleanup

11 lines of code changed in 1 file:

mcconnell 2018-09-11 11:28 Rev.: 58613

Hopefully addressed the BC issues.

19 lines of code changed in 2 files:

mcconnell 2018-09-11 11:28 Rev.: 58612

More work

9 lines of code changed in 3 files:

mcconnell 2018-09-11 11:28 Rev.: 58611

More progress removing star variables

47 lines of code changed in 6 files:

mcconnell 2018-09-11 11:28 Rev.: 58610

A start to replacing 'star' variables with 'non-star' variables at STATE_NP1 or removing when necessary.

12 lines of code changed in 3 files:

ahumphrey 2018-09-11 09:39 Rev.: 58609

* Remove RunLengthEncoder and supporting classes, etc. This is no longer used. Removal will help clarity regarding Uintah::Variable functionality and features. This change has neccesitated explicit inclusion of "unistd.h" in a few spots, most specifically - MPM, for getpid() calls.

* Remove build system support for IPM and MAGMA libs, which have never been used. MAGAMA in fact, may ultimately hender Kokkos GPU asynchrony and performance.

* Generate new configure script with enable_option_checking bulletproofing.

* Delete unused header files.

* A few other cosmetic changes while under the hood, formatting, white space, etc.

57 lines of code changed in 39 files:

ahumphrey 2018-09-10 14:09 Rev.: 58608

Fix error with "cleanreally/reallyclean" make targets. Previously, testprograms was always compiled. However, when the change was made to need explicit enablling (--enable-unit-tests), the old make traget generated a confusing error. Now conditionally remove .o files in the testprograms directory contingent the directory's exsistence.

Remove unused files in Core/Grid/Variables. Therer were 3 DataItem definitions within Uintah, one for GeometryObject and another for the DataWarehouse. Here, the unused third is removed, which looked like it was originally intended to be used with Reduction and Sole Variables.

2 lines of code changed in 7 files:

allen 2018-09-07 18:23 Rev.: 58605

changed order of checks - inital check must be last

37 lines of code changed in 2 files:

allen 2018-09-07 17:24 Rev.: 58604

update the warning to be clearer

5 lines of code changed in 1 file:

allen 2018-09-07 16:30 Rev.: 58603

fixed spelling error and formatting

7 lines of code changed in 1 file:

allen 2018-09-07 15:46 Rev.: 58602

added reading time spec attributes for output and checkpoint dumping when thresholds are met, refined the flags, minor name changes

249 lines of code changed in 6 files:

allen 2018-09-06 17:05 Rev.: 58596

added an example of the outputIfInvalidNextDelT

7 lines of code changed in 1 file:

allen 2018-09-06 17:04 Rev.: 58595

refined the application reduction var class

345 lines of code changed in 6 files:

allen 2018-09-06 14:59 Rev.: 58593

made isBenignValue a const and cleaned up the boolean checks

3 lines of code changed in 1 file:

harman 2018-09-05 17:36 Rev.: 58589

Replaced XML::Simple -> XML::LibXML.

Added get_XML_value() utility. It returns either an array or a scalar and a default value
if the xml tag does not exist.

141 lines of code changed in 5 files:

derekhar 2018-09-05 11:19 Rev.: 58586

Removed reference to old iteration scheme in parallel_for

0 lines of code changed in 1 file:

allen 2018-09-05 10:20 Rev.: 58585

removed tabs

10 lines of code changed in 1 file:

allen 2018-09-05 10:19 Rev.: 58584

added more comments and revised the debug flag names for clarity

86 lines of code changed in 1 file:

allen 2018-09-05 10:18 Rev.: 58583

added more spacing for the descriptions

0 lines of code changed in 4 files:

harman 2018-09-04 17:31 Rev.: 58582

Updated gnuplot scripts. Printing the curve fit parameters as labels on the plots works again.

analyze_results.pl, masterScript.pl, run_tests.pl
- moved common subroutine for cleaning out unwanted spaces and returns to a common module
Utilities.pm

analyze_results.pm
- converted from xml::Simple to XML::Lib
- Simplified and cleaned up.

174 lines of code changed in 22 files:

allen 2018-09-02 18:00 Rev.: 58580

set the default to false

1 lines of code changed in 1 file:

August 2018 »

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