July 2018 Commit Log

Number of Commits:
58
Number of Active Developers:
9
harman 2018-07-31 18:03 Rev.: 58489

- nuked tabs.
- 2 space indentation
- Added spaces and dividers

155 lines of code changed in 1 file:

guilkey 2018-07-30 18:43 Rev.: 58484

Compute the particle surface gradient every 10 timesteps, otherwise carry it
forward.

92 lines of code changed in 7 files:

harman 2018-07-30 18:02 Rev.: 58483

Created a vector of customInitialization methods so the user can combine methods, i.e., vortices + DNS_Moser.

0 lines of code changed in 4 files:

allen 2018-07-30 15:55 Rev.: 58482

added additional time info

37 lines of code changed in 1 file:

allen 2018-07-30 15:55 Rev.: 58481

white space clean up

13 lines of code changed in 2 files:

allen 2018-07-30 15:28 Rev.: 58479

reworked the wall time usage to minimize the cost of getting it

69 lines of code changed in 2 files:

allen 2018-07-30 14:33 Rev.: 58478

only do the bcast of the wall time if checkpointing based on the wall time

12 lines of code changed in 1 file:

allen 2018-07-30 13:44 Rev.: 58477

reworked the boolean logic so that the wall time bcast is done only if needed

33 lines of code changed in 1 file:

allen 2018-07-30 13:00 Rev.: 58476

fixed typo

1 lines of code changed in 1 file:

allen 2018-07-30 12:10 Rev.: 58474

changed the reports so it can be less frequent

66 lines of code changed in 2 files:

allen 2018-07-30 11:32 Rev.: 58472

set DOUTs to report on proc0 only and fixed the sim time

12 lines of code changed in 1 file:

allen 2018-07-30 10:37 Rev.: 58471

change warnings to DOUTs

56 lines of code changed in 1 file:

harman 2018-07-27 17:41 Rev.: 58467

Added initial velocity profile for simulating Moser 1999, DNS Re_tau = 395. Needs to be verified.

Global:
- removed EOL spaces.
- name change *_inputs -> *_vars, easier to read

PowerLaw:
- set the global struct variables directly instead of using a temp variable.

226 lines of code changed in 2 files:

harman 2018-07-27 16:09 Rev.: 58466

Tighten boundary condition bulletproofing. Extra cells = 1 must be specified on non-periodic faces.
On periodic faces extra cells = 0.

70 lines of code changed in 3 files:

harman 2018-07-27 10:04 Rev.: 58464

Updated email list for kokkos-dev.

1 lines of code changed in 1 file:

jthornoc 2018-07-25 14:09 Rev.: 58455

Getting rid of an old, crufty turbulence model which may have bugs
(thanks Dav for pointing this out).

1 lines of code changed in 6 files:

jbhooper 2018-07-23 15:31 Rev.: 58454

-- Update error in ArrudaBoyce model

0 lines of code changed in 2 files:

harman 2018-07-23 12:45 Rev.: 58452

Added LDFLAGS='-ldl' to kokkos configure line.

2 lines of code changed in 1 file:

harman 2018-07-23 11:06 Rev.: 58450

fixed typo

1 lines of code changed in 1 file:

harman 2018-07-23 11:01 Rev.: 58449

Moved helpers/cleanup -> toplevel

Renamed svn_checkout_startTester -> svn_checkout_scripts
Download fresh copies of the scripts everynight.

94 lines of code changed in 5 files:

harman 2018-07-23 10:31 Rev.: 58448

Email users when there's trash to be deleted.


0 lines of code changed in 1 file:

harman 2018-07-20 17:17 Rev.: 58446

Added configuration for kokkos_rt, untested.

32 lines of code changed in 4 files:

harman 2018-07-20 16:09 Rev.: 58445

Overwrite file if it exists.

0 lines of code changed in 1 file:

harman 2018-07-20 15:56 Rev.: 58444

- removed weeds.
- added script to download from the repo the latest version of startTester. This script
should be called before the nightly RT is started.

20 lines of code changed in 3 files:

bisaac 2018-07-20 14:34 Rev.: 58443

Removed if statement that was no longer needed. No impact on RT.

0 lines of code changed in 1 file:

bisaac 2018-07-20 14:28 Rev.: 58442

Remaining changes to get nles working on the 64x64x64 test case. No impact on rt.

43 lines of code changed in 5 files:

allen 2018-07-20 11:48

commented out DOUT as they cause an error when used with VisIt

24 lines of code changed in 2 files:

harman 2018-07-19 16:50 Rev.: 58438

Added a date stamp to the output.

2 lines of code changed in 2 files:

bisaac 2018-07-19 11:08 Rev.: 58437

Updated coefficients for fourth order deriviative in NLES model. This wont impact RT.

1 lines of code changed in 1 file:

harman 2018-07-18 14:29 Rev.: 58436

- Removed cyrus's configuration

- Added ability to output html from the local RT scripts. This will be useful for
inspecting buildbot failures.

- rsync an application's results to public_html/ after all tests have run.

- Misc. cleanup.

85 lines of code changed in 8 files:

bisaac 2018-07-17 17:08 Rev.: 58434

Updated 4th order coefficients for interpolation. No impact on regression tests.

2 lines of code changed in 1 file:

bisaac 2018-07-17 16:05 Rev.: 58431

Removed a redundant nles task and clean up some old comments.

10 lines of code changed in 9 files:

bisaac 2018-07-17 14:43 Rev.: 58430

Fixed indentation in NLES code. No impact on regression tests.

1424 lines of code changed in 6 files:

guilkey 2018-07-16 16:32 Rev.: 58423

Remove some debugging output.

0 lines of code changed in 1 file:

guilkey 2018-07-16 16:28 Rev.: 58422

Copying a particle set into a vector for use in an inside loop to achieve added
efficiency.

24 lines of code changed in 1 file:

harman 2018-07-12 18:02 Rev.: 58416

Updated uintah-build:gpu_rt configure line


1 lines of code changed in 1 file:

dav 2018-07-12 14:44 Rev.: 58415

Fix (this time for sure...?) earlier fix for deleting directories on certain file systems. Note, this routine is only used when 'boost' is not enabled (via configure)... otherwise the boost 'remove' is called (and does not suffer from this issue). This is why only a small subset of users were seeing the issue of some checkpoint dirs not being deleted.

0 lines of code changed in 2 files:

guilkey 2018-07-12 13:42 Rev.: 58413

More changes to enable computing boundary reaction forces.

5 lines of code changed in 1 file:

derekhar 2018-07-12 09:13 Rev.: 58412

Delete std::vector for 1-D chemistry table scenarios

1 lines of code changed in 1 file:

dav 2018-07-11 17:05 Rev.: 58409


This fixes an issue with (older/non-compliant?) file systems with respect to deleting directories.
For many years We had a 'hack' in place for AIX file systems to use 'stat' instead of the cheaper
"file->d_type" check. It turns out that we should (have been) use the hack anytime that file->d_type
is DT_UNKNOWN, not just under AIX. This should fix the problem that some people were seeing on some
file systems where (checkpoint) diretories were not being deleted when they should have been.

M CCA/Components/DataArchiver/DataArchiver.h
M CCA/Components/DataArchiver/DataArchiver.cc

- Const'ify a number of method params that are not changed in the functions (and thus should be declared const).
- Add some white space for readability.
- Actually print out warning messages when old checkpoint directories fail to be deleted.

M CCA/Components/Schedulers/OnDemandDataWarehouse.cc
M CCA/Components/SimulationController/SimulationController.cc

- Purely cosmetic: Add some white space for readability.

M CCA/Ports/Output.h

- Match updated interface (ie, use of const) for DataArchiver.
- Add some white space for readability.

M Core/OS/Dir.h
M Core/OS/Dir.cc

- Add 'const' due to addition of const above.
- Add some white space for readability.
- Fix the check that we use to determine if a 'file' is a directory (see above).

M Core/OS/Dir_boost.cc

- Add const, white space, and {} for if statement.

113 lines of code changed in 10 files:

guilkey 2018-07-11 10:34 Rev.: 58407

Removed double creation of gVelocityBCLabel.

0 lines of code changed in 1 file:

dav 2018-07-10 17:43 Rev.: 58405


Updates toward getting particle data to work with PIDX. This commit is not the complete fix,
but particles aren't being used with PIDX anyway, so it won't affect anything.

M CCA/Components/DataArchiver/DataArchiver.cc

- Add PIDX support for IntVector.
- Fix the long64_type params.
- Initial setting of particle position index, though this will change soon with the updating of PIDX to use multiple particles at some point.

M CCA/Ports/PIDXOutputContext.cc

- Fix name from UPS spec, just use "CHUNKING_ZFP" instead of "PIDX_CHUNKING_ZFP".
- Fix name of ParticleVars and NCVars output files.

M Core/DataArchive/DataArchive.cc

- Fixes for handling particle data in PIDX. Not a complete fix, but a step in the right direction.
Particle RT tests do NOT pass at this point.


143 lines of code changed in 4 files:

harman 2018-07-10 17:19 Rev.: 58404

Added delimiter char ":" to output so it's easier to parse and perform bulletproofing.

0 lines of code changed in 2 files:

derekhar 2018-07-10 16:14 Rev.: 58401

Removed compiler warning. Also fixed bug in previous table commit using double type as an array index.

4 lines of code changed in 1 file:

harman 2018-07-10 16:01 Rev.: 58400

Remove the stamp directory after the loop over all timestep directories to tar.

0 lines of code changed in 2 files:

derekhar 2018-07-09 17:12 Rev.: 58391

Removed polymorphism from Arches table. This Commit will break all tests using a 2-D or 1-D table, but should not break any tests exclusively using a 3-D table.

39 lines of code changed in 3 files:

guilkey 2018-07-09 15:22 Rev.: 58389

Turning on a few more tasks to get out reduction variables to enable comparison
with SerialMPM output.

13 lines of code changed in 1 file:

guilkey 2018-07-09 13:19 Rev.: 58388

Hardwired in some code for larger scale testing.

49 lines of code changed in 1 file:

guilkey 2018-07-09 09:58 Rev.: 58385

Added some comments about the model.

11 lines of code changed in 1 file:

guilkey 2018-07-08 18:04 Rev.: 58382

Remove some debugging output.

0 lines of code changed in 1 file:

guilkey 2018-07-08 17:38 Rev.: 58381

pSurfLabel should be a double not an int.

2 lines of code changed in 1 file:

guilkey 2018-07-07 14:51 Rev.: 58379

Add SingleFieldMPM to the list of application options.

7 lines of code changed in 1 file:

guilkey 2018-07-07 14:49 Rev.: 58378

More work on brining SingleFieldMPM online.

107 lines of code changed in 5 files:

guilkey 2018-07-06 13:17 Rev.: 58377

Add labels for SingleFieldContact version.

134 lines of code changed in 2 files:

guilkey 2018-07-06 12:54 Rev.: 58376

Adding a new MPM alternative that is still in progress, but finally showing
signs that it might work.

6551 lines of code changed in 6 files:

ahumphrey 2018-07-03 18:38 Rev.: 58372

Correctly report number and type of DetailedTasks created in task graph.
Some other minor formatting and cleanup.

41 lines of code changed in 3 files:

harman 2018-07-03 08:34 Rev.: 58371

uintah-build:
Using the default DBG_configure line, that include --enable-sci-malloc

0 lines of code changed in 1 file:

harman 2018-07-02 15:02 Rev.: 58370

uintah-build: use hypre 2.8.0b until the patient stabilizes.

2 lines of code changed in 1 file:

June 2018 »

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