Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

News

vt-mayaCongratulations are in order to the VisTrails team. Their Provenance Explorer for Maya has won the Utah 2009 Innovation Award.

VisTrails Inc., a SCI spin off company, was one of just nine companies to be awarded a Utah Innovation award for 2009. This award is designed to recognize Utah companies that make important innovations in their industries. A committee of more than 70 experts from private industry, government and higher education selected the award winners. Vistrails, Inc. was recognized in the Enterprise B-2-B Software category for it's Provenance Explorer for Maya.

For more information see: SL Tribune - "Utah's innovative spirit on display in Salt Lake City"
wfmSCI, in collaboration with the National Center for Atmospheric Research (NCAR) and the University of Colorado at Denver have teamed up to tackle the challenges associated with modeling the complexities of wildfires.

www.openwfm.org

The losses associated with wildfires and the wish to understand, predict, and control wildfires have driven researchers to create ever more detailed and powerful computational models. However, the necessary sophistication and realism requires scientific computing and analysis processes of a complexity that has itself become a hindrance to further progress and education. In addition, the research is done by geographically disperse interdisciplinary groups, and making their models interoperate is a challenge. This project strives to overcome this complexity and challenges to collaboration by state-of-the-art software engineering, visualization, and collaboration tools. The results will find applications in wildfire research, education, training, and management.

v100-09Congratulations go out to our Associate Director Greg Jones who was recently designated a v|100 - vSpring Top 100 Venture Entrepreneur. The v|100 designation is given to those individuals voted most likely to lead a successful business venture in Utah within the next few years. The v|100 is designed to help entrepreneurs and vSpring Capital establish and cultivate relationships among top CEO and CTO talent in the region. Members of this elite executive community are chosen through a peer-nominated and peer-selected process. Top members of the Utah business community were surveyed by a vSpring team to nominate the top 100 ventrue entrepreneurs in Utah. 2009 marks the sixth year of the v|100 Community. Greg was also selected as a v|100 member in 2008 and 2005.
scirun-4-0The NIH/NCRR Center for Integrative Biomedical Computing (CIBC) is pleased to announce the release of the 4.0 version of the SCIRun software suite. SCIRun is a problem solving environment for biomedical problems that is based on a dataflow paradigm. The new version contains many bug fixes, a new interface and many new modules. The new 4.0 version is now available as binary download for both OS X and Windows XP/Vista as well as a source download for other platforms.

To download the new SCIRun version 4.0, go to our CIBC Software portal.
For questions and further information on the 4.0 SCIRun release, please visit the CIBC webiste software page.
libraryThe SCI Institute, in partnership with the Department of Radiology has been working towards new goals in public outreach. A three-part exhibit is now on display at the Salt Lake Public Library and includes hands-on multi-media, Q and A from the University's leading radiologists, a four lecture series, and a 20 piece gallery display which will run through December. Overall, it has been a great success and has opened the public eye to a glimpse of what we are working on.

afibBy Rob MacLeod, Professor and Associate Chair of Undergraduate Studies, Department of Bioengineering

Atrial fibrillation is the most common – and perhaps most insidious – form of heart rhythm disturbance, affecting 2.5 million Americans. While usually not life-threatening in its initial stages, the condition can eventually lead to a stroke or heart attack. Finding better ways to treat atrial fibrillation is the focus of a group of bioengineers in the College of Engineering who have teamed up with imaging physicists and physicians in the School of Medicine.

news-bytesFEBio software profiled in Spring 2008 issue of BioMedical Computation. Download the pdf here
gregThe Scientific Computing and Imaging Institute is delighted to welcome Dr. Greg Jones back to the SCI Institute as our Associate Director. Dr. Jones previously served as our Associate Director from 2000 to 2005. He was then called by Governor Jon M. Huntsman to serve as the State Science Adviser to the Governor of Utah and Director of the Utah Economic Clusters Initiative from 2005 to 2007. He was awarded the 2007 Medal for Science and Technology by Utah Governor Jon M. Huntsman for his science leadership to the State of Utah. Most recently, he served as the Executive Director of Research at the Moran Eye Center.
tolgaDr. Tolga Tasdizen has joined the SCI faculty as an Assistant Professor of the Department of Electrical and Computer Engineering and will become the SCI Institute's second USTAR Faculty member, joining Dr. Guido Gerig. Prior to being appointed USTAR Faculty, Tolga was a Research Assistant Professor in the School of Computing at the University of Utah. Dr. Tasdizen received his Ph.D. in Engineering from Brown University and is an expert in image processing, creating state-of-the-art research applied to biomedical and biological applications such as reconstructing neural circuit diagrams from large numbers of very high resolution microscopy images. His research interests include image analysis, computer vision and pattern recognition. The Utah Science and Technology Research Initiative (USTAR) is a state-funded, long-term effort to strengthen Utah's "knowledge economy".
v100-08Congratulations go out to our new Associate Director Greg Jones who was recently designated a v|100 - vSpring Top 100 Venture Entrepreneur. The v|100 designation is given to those individuals voted most likely to lead a successful business venture in Utah within the next few years. The v|100 is designed to help entrepreneurs and vSpring Capital establish and cultivate relationships among top CEO and CTO talent in the region. Members of this elite executive community are chosen through a peer-nominated and peer-selected process. Top members of the Utah business community were surveyed by a vSpring team to nominate the top 100 ventrue entrepreneurs in Utah. 2008 marks the fifth year of the v|100 Community. Greg was also selected as a v|100 member in 2005.
corbato2The Scientific Computing and Imaging Institute congratulates Dr. Steve Corbató on being named Director of Cyberinfrastructure Strategic Initiatives at the University of Utah. Dr. Corbató has served as the SCI Institute's Associate director since May of 2006. Steve will report directly to VP of Information Technology, Steve Hess and help the University with future cyberinfrastructure plans. While Steve will be moving to the INSCC Building, we'll definitely still see him on a regular basis as we'll work together on future computing initiatives. Steve is already working on multiple projects and ideas with SCI Institute and other University of Utah faculty.