Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


 A. Dietrich, I. Wald, H. Schmidt, K. Sons, P. Slusallek. “Realtime Ray Tracing for Advanced Visualization in the Aerospace Industry,” In Proceedings of the 5th Paderborner Workshop Augmented and Virtual Reality in der Produktentstehung, 2006.


S.E. Dillard, V. Natarajan, G.H. Weber, V. Pascucci, B. Hamann. “Tessellation of Quadratic Elements,” In ISAAC, pp. 722--731. 2006.


S. Dong, P.-T. Bremer, M. Garland, V. Pascucci, J.C. Hart. “Spectral Surface Quadrangulation,” In ACM Transactions on graphics: ACM SIGGRAPH 2006 Papers, Boston, Massachusetts, ACM Press, New York, NY, USA pp. 1057--1066. 2006.
ISBN: 1-59593-364-6


C.C. Douglas, J.C. Harris, M. Iskandarani, C.R. Johnson, R.J. Lodder, S.G. Parker, M.J. Cole, R. Ewing, Y. Efendiev, R. Lazarov, G. Qin. “Dynamic Contaminant Identification in Water,” In Proceedings of Computational Science - ICCS 2006: 6th International Conference, Part III, Reading, UK, May 28-31, 2006, Lecture Notes in Computer Science series, Vol. 3993, Edited by Vassil N. Alexandrov and Geert Dick van Albada and Peter M.A. Sloot and Jack J. Dongarra, Springer-Verlag Heidelberg, pp. 393--400. 2006.


H. Edelsbrunner, D. Morozov, V. Pascucci. “Persistence-based Simplification of Real-Valued Functions on 2-Manifolds,” In Proceedings of the 22nd International Annual Symposium on Computational Geometry, Note: To appear, pp. 212--220. 2006.


E. Eide, L. Stoller, T. Stack, J. Freire, J. Lepreau. “Integrated Scientific Workflow Management for the Emulab Network Testbed,” In Proceedings of the 2006 USENIX Annual Technical Conference, pp. 33. 2006.


B.J. Ellis, R.E. Debski, S.M. Moore, P.J. McMahon, J.A. Weiss. “Methodology and Sensitivity Studies for Finite Element Modeling of the Inferior Glenohumeral Ligament Complex,” In J. Biomech., Vol. 40, No. 3, pp. 603--612. January, 2006.


B.J. Ellis, T.J. Lujan, M.S. Dalton, J.A. Weiss. “MCL Insertion Site and Contact Forces in the ACL-Deficient Knee,” In Journal of Orthopaedic Research, Vol. 24, No. 4, Elsevier, pp. 800--810. 2006.


P.T. Fletcher, S.M. Pizer, S. Joshi. “Shape Variation of Medial Axis Representations via Principal Geodesic Analysis on Symmetric Spaces,” In Statistics and Analysis of Shapes, Springer, pp. 29--59. 2006.
DOI: 10.1007/0-8176-4481-4_2


P.T. Fletcher, R.T. Whitaker. “Riemannian Metrics on the Space of Solid Shapes,” In MICCAI Workshop on Mathematical Foundations of Computational Anatomy, October, 2006.


J. Freire, C.T. Silva, S.P. Callahan, E. Santos, C.E. Scheidegger, H.T. Vo. “Managing Rapidly-Evolving Scientific Workflows,” In Provenance and Annotation of Data, In Proceedings of The 2006 International Provenance and Annotation Workshop, Lecture Notes in Computer Science (LNCS), pp. 10--18. 2006.


G. Gerig, B. Davis, P. Lorenzen, S. Xu, M. Jomier, J. Piven, S. Joshi. “Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth,” In Proceedings of The Third International Symposium on 3D Data Processing, Visualization, and Transmission, pp. 1041--1047. June, 2006.


G. Gerig, S. Joshi, P.T. Fletcher, K. Gorczowski, S. Xu, S.M. Pizer, M. Styner. “Statistics of Populations of Images and its Embedded Objects: Driving Applications in Neuroimaging,” In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1120--1123. April, 2006.


A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod. “Wavefront-based Models for Inverse Electrocardiography,” In IEEE Trans Biomed. Eng., Vol. 53, No. 9, pp. 1821--1831. 2006.
DOI: 10.1109/TBME.2006.878117


A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod. “Lead Selection for Inverse Electrocardiography,” In IEEE Trans Biomed. Eng., pp. in press. 2006.


A. Ghodrati, A. Keely, G. Tadmor, R.S. MacLeod, D.H. Brooks. “A Wavefront-Based Constraint for Potential Surface Solutions in Inverse Electrocardiography,” In 2006 International Conference of the IEEE Engineering in Medicine and Biology Society, IEEE, New York, NY, USA August, 2006.
DOI: 10.1109/IEMBS.2006.260373


A. Ghodrati, D.H Brooks, G. Tadmor, R.S. MacLeod. “A Threshold-Based Method for Inverse Solutions to Reconstruct Complex Obstacles, with Application to the Inverse Problem of Electrocardiography,” In SIAM Conference on Imaging Science, Minneapolis, MN, USA May, 2006.


J.H. Gilmore, W. Lin, G. Gerig. “IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain Development,” In Am J Psychiatry, Vol. 163, pp. 2046. December, 2006.


C.E. Goodyer, M. Berzins, P.K. Jimack, L.E. Scales. “A Grid-enabled Problem Solving Environment for Parallel Computational Engineering Design,” In Advances in Engineering Software, Vol. 37, No. 7, pp. 439--449. 2006.


C.E. Goodyer, M. Berzins. “Solving Computationally Intensive Engineering Problems on the Grid using Problem Solving Environments,” In Grid Computing: Software Environments and Tools, Edited by J.C. Cunha and O.F. Rana, Springer Verlag, pp. 284--301. 2006.