Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Institute Collaborators

Effective and meaningful collaborations are the life blood of the SCI Institute.  SCI Institute research is a result of bringing world class computer science and bioengineering into cutting-edge projects in fields ranging from neuroimaging to forest fire simulation.  In the vast majority of our collaborations the SCI Institute expertise and work is made available to whole communities via open source software releases.  This enables the fundamental idea of gaining the largest impact possible from SCI research.

University of Utah Department Collaborators

  • Architecture
  • Atmospheric Science
  • Biochemistry
  • Bioengineering Department - Ed Hsu, Richard A. NormannGreg Clark
  • Bioinformatics
  • Biology
  • Brain Institute
  • Cardiology
  • Chemical Engineering
  • Chemistry
  • Center for High Performance Computing (CHPC) - Joe Breen
  • CTSA
  • CVRTI
  • Department of Orthopaedics
  • Deparatment of Human Genetics
  • Energy & Geosciences Institute - Ray Levey
  • English
  • Epidemiology
  • Genetics
  • Geography
  • Health Sciences Center - William McMahon
  • ICSE
  • Mathematics
  • Mechanical Engineering - Robert B. Roemer
  • Molecular Medicine
  • Moran Eye Center
  • Nephology
  • Neurology
  • Neurosurgery
  • Nuclear Engineering
  • PCMC Cardiology
  • Pediatrics - Trish Goede
  • Pharmaceutical Chemistry
  • Physiology
  • Psychology
  • Radiation Oncology
  • Radiology
  • School of Computing
  • TCO
  • Utah Center for Advanced Imaging Research (UCAIR) - Jim Lee, Dennis Parker, Eugene Kholmovski, Eun-Kee Jeong, Dan Kadrmis, Ed Dibella

International Collaborators

  • Ben Gurion University, Israel - Zohar Yosibash
  • Cambridge
  • Canadian Meteorological Center
  • Center of Advanced European Studies And Research (CAESAR), Bonn - Robert Strzodka
  • Charles University Hospital, Prague
  • Chinese Academy of Science
  • Griffith University, Brisbane, Australia
  • Hebrew University of Jerusalem
  • Imperial College, London - Spencer Sherwin
  • Inria Asclepios, Sophia Antipolis, France
  • Interdepartmental Program in Neuroscience - Janet Lainhart
  • Karlsruhe Institut für Technologie, Germany
  • King Abdullah University of Science and Technology
  • Kings College London
  • Klinikum Coburg
  • Medical University of Graz, Austria
  • National Institute for Research in Computer Science and Control (Inria)
  • Radboud University, Nijmegen, The Netherlands
  • Sabancı University
  • Shanghai Jiaotong University
  • Technical University of Munich
  • TurboLinux - Jamie Painter
  • Universitat de Valencia (Valencia, Spain)
  • Universitat Pompeu Fabra (UPF) (Barcelona)
  • University College London - Simon Arridge
  • University of Auckland
  • University of British Columbia
  • University of Duisburg - Martin Rumpf
  • University of Erlangen - Ulrich Ruede
  • University of Kaiserslautern
  • University of Leeds
  • University of Ljubljana
  • University of Maastricht, The Netherlands
  • University of Münster
  • University of Stuttgart HLRS
  • University of Toronto
  • Yonsei University, South Korea

National Collaborators

  • Alzheimer's Image Analysis Laboratory, Center for Alzheimer's Care, Imaging and Research - Richard D. King
  • Argonne National Lab - Rick Stevens
  • Army Research Laboratories
  • BAM Advisor Services
  • Boston Scientific
  • Brigham and Women's Hospital - Ron Kikinis
  • Broad Institute
  • Brown University - Andy Van Dam, George Karniadakis, David H. Laidlaw, Jan Hesthaven
  • Caltech Computer Science - Peter Schroeder
  • Canadian Meteorological Center
  • Cardiothrive
  • Celera - John Reynders
  • Center for Coastal Margin Observation & Prediction
  • Children's Hospital Boston
  • Cleveland Clinic
  • Cornell University
  • crowdLabs
  • Dalhousie University
  • DataOne
  • Duke University - Craig Henriquez
  • Electrical Geodesics, Inc. - Don Tucker
  • General Atomics/DIII-D - David Schissel
  • General Electric Research Labs - Bill Lorensen (retired)
  • Harvard University
  • Harvard Medical School - Ron Kikinis, Bob McCarley
  • Indiana University - Dennis Gannon
  • Johns Hopkins University - Elliot McVeigh
  • Kettering Cancer Center
  • Kitware
  • Lawrence Berkeley National Laboratory
  • Lawrence Livermore National Laboratory
  • Los Alamos Advanced Computing Laboratory
  • Los Alamos National Laboratories
  • Louisiana State University
  • Massachusetts General Hospital
  • Massachusetts Institute of Technology - Tom Fredian, Gregory J. McRae
  • Mayo Clinic - Greg Worrell
  • MERL Research Lab - Hanspeter Pfister
  • McGill
  • Medical College of Wisconsin
  • Medtronic
  • Microsoft Research
  • MIT Lincoln Labs
  • Montana State University - Gwen Jacobs, John Miller
  • Mountain View Data - Cliff Miller
  • MSR
  • National Biomedical Computation Resource
  • National Center for Microscopy and Imaging Research - Mark Ellisman
  • National Resource for Cell Analysis and Modeling
  • NCI
  • Neuroimaging Informatics Tools and Resources Clearinghouse
  • North Carolina State University - Dan Reed
  • Northeastern University - Dana Brooks
  • Northwestern University
  • Oak Ridge National Laboratory
  • Ohio State University
  • Pacific Northwest National Laboratories - Harold Trease
  • Physio Control
  • Princeton Plasma Physics Laboratory (PPPL) - Scott Klasky
  • Purdue University
  • Rensselaer Polytechnic Institute (RPI) - Mark Shephard
  • Rochester Institute of Technology
  • Sandia National Laboratory
  • Science Applications International Corporation (SAIC) - Dalton Schnack, Scott Kruger
  • SGI - Mike Matheson
  • Siemens AG Medical Solutions
  • Smithsonian Institute
  • St. Jude Medical
  • Stanford University - Peter Heilbrun
  • Texas A&M University - Ali Beskok, Richard E. Ewing
  • University of Arizona
  • University of California Davis
  • University of California Los Angeles
  • University of California San Diego - Scott Makeig, Mark Ellisman
  • University of California San Francisco - Srikantan S. Nagarajan
  • University of Chicago - Ian Foster
  • University of Colorado - Henry Tufo
  • University of Iowa
  • University of Kentucky
  • University of Louisville
  • Georgia Tech
  • University of North Carolina - Mark Harris
  • University of Oregon - Sameer Shende, Alan Maloney
  • University of Pennsylvania
  • University of Pittsburg
  • University of Southern California - Carl Kesselman
  • University of Tennessee - Jack Dongarra
  • University of Texas Austin
  • University of Texas Health Science Center at San Antonio - Charles Keller
  • University of Washington
  • University of Wisconsin - Carl Sovinec
  • University of Wyoming - Craig Douglas
  • Utah State University - Eric Held
  • VisTrails.org
  • Yale University