Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


 S.P. Awate, T. Tasdizen, R.T. Whitaker. “Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,” SCI Institute Technical Report, No. UUSCI-2006-011, University of Utah, 2006.


S.P. Awate, R.T. Whitaker. “Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration,” In IEEE Trans. Pattern Anal. & Mach. Intel., Vol. 28, No. 3, pp. 364--376. March, 2006.
PubMed ID: 16526423


S.P. Awate, R.T. Whitaker. “Adaptive Markov Models for Information-Theoretic Empirical-Bayesian MRI Denoising,” SCI Institute Technical Report, No. UUSCI-2006-030, University of Utah, 2006.


S.P. Awate. “Adaptive, Nonparametric Markov Models and Information-Theoretic Methods for Image Restoration and Segmentation,” Note: PhD Thesis, School of Computing, University of Utah, December, 2006.


S.P. Awate, E.V.R. DiBella, T. Tasdizen, R.T. Whitaker. “Model-Based Image Reconstruction for Dynamic Cardiac Perfusion MRI from Sparse Data,” In Proceedings of the 2006 IEEE Int. Conf. Engineering and Biology Society (EMBC), pp. 936--941. 2006.


S.P. Awate, T. Tasdizen, N.L. Foster, R.T. Whitaker. “Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification,” In Medical Image Analysis (MEDIA), Vol. 10, No. 5, pp. 726--739. 2006.


S. Babaeizadeh, D.H. Brooks. “Imaging Error from Mislocation of Surface Sensors: Sensitivity, Detection, and Estimate Correction, with Application to EIT,” In Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, Toulouse, France May, 2006.


L. Barbosa, J. Freire. “Automatically Constructing Collections of Online Databases,” In Proceedings of the 15th ACM International Conference on Information and Knowledge Management (CIKM), Arlington, pp. 796--797. 2006.


S. Basu, P.T. Fletcher, R.T. Whitaker. “Rician Noise Removal in Diffusion Tensor MRI,” In Medical Image Computing and Computer Assisted Intervention (MICCAI), Vol. LNCS 4190, pp. 117--125. October, 2006.


L. Bavoil, S.P. Callahan, C.T. Silva. “Robust Soft Shadow Mapping with Depth Peeling,” SCI Institute Technical Report, No. UUSCI-2006-028, University of Utah, 2006.


L. Bavoil, S.P. Callahan, A. Lefohn, J.L.D. Comba, C.T. Silva. “Multi-Fragment Effects on the GPU using the k-Buffer,” SCI Institute Technical Report, No. UUSCI-2006-032, University of Utah, 2006.


“Advances in Visual Computing, Second International Symposium, ISVC 2006, Lake Tahoe, NV, USA, November 6-8, 2006 Proceedings, Part I,” In ISVC (1), Lecture Notes in Computer Science, Vol. 4291, Edited by George Bebis and Richard Boyle and Bahram Parvin and Darko Koracin and Paolo Remagnino and Ara V. Nefian and Meenakshisundaram Gopi and Valerio Pascucci and Jiri Zara and Jose Molineros and Holger Theisel and Thomas Malzbender, Springer, 2006.
ISBN: 3-540-48628-3


C. Benthin, I. Wald, P. Slusallek. “Techniques for Interactive Ray Tracing of Bezier Surfaces,” In Journal of Graphics Tools, Vol. 11, No. 2, pp. 1--16. 2006.


C. Benthin, I. Wald, M. Scherbaum, H. Friedrich. “Ray Tracing on the CELL Processor,” In Proceedings of the 2006 IEEE Symposium on Interactive Ray Tracing, pp. 25--32. 2006.


F.F. Bernardon, S.P. Callahan, J.L.D. Comba, C.T. Silva. “Interactive Volume Rendering of Unstructured Grids with Time-Varying Scalar Fields,” In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, pp. 51--58. 2006.


M. Berzins. “Is there Still More to Science than Simulation?,” No. UUSCI-2006-031, SCI Institute, University of Utah, November, 2006.


M. Berzins. “Adaptive Polynomial Interpolation on Evenly Spaced Meshes,” SCI Institute Technical Report, No. UUSCI-2006-033, University of Utah, 2006.


W. Bethel, C.R. Johnson, C.D. Hansen, S.G. Parker, A.R. Sanderson, C.T. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, B. Hamann. “VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies,” In J. Phys.: Conf. Ser., Vol. 46, pp. 561--569. 2006.


J. Bigler, A.J. Stephens, S.G. Parker. “Design for Parallel Interactive Ray Tracing Systems,” SCI Institute Technical Report, No. UUSCI-2006-027, University of Utah, 2006.


J. Bigler, J. Guilkey, C. Gribble, C.D. Hansen, S.G. Parker. “A Case Study: Visualizing Material Point Method Data,” In Proceedings of Euro Vis 2006, pp. 299--306, 377. May, 2006.