Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2003


 J. Cates, R.T. Whitaker. “Interactive Medical Image Segmentation Using the Insight Toolkit,” In Proceedings of The Radiological Society of North America Annual Meeting 2003, November, 2003.


W. Ciro, E.G. Eddings, A.F. Sarofim. “Fast Cookoff Tests Report,” C-SAFE Internal Report, C-SAFE, October, 2003.


D. Cohen-Or, Y.L. Chrysanthou, C.T. Silva, F. Durand. “A Survey of Visibility for Walkthrough Applications,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 9, No. 3, IEEE Computer Society, Los Alamitos, CA, USA pp. 412--431. 2003.
ISSN: 1077-2626


M. Cole, S.G. Parker. “Dynamic Compilation of C++ Template Code,” In Scientific Programming, Vol. 11, IOS Press, pp. 321--327. 2003.


K. Cole-McLaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Loops in Reeb Graphs of 2-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-JC-151933, pp. 344--350. June, 2003.


K. Cole-McLaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Loops in Reeb Graphs of 2-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-JC-151933, pp. 344--350. June, 2003.


A. Corlan, R.S. MacLeod, L.D. Ambroggi. “Low Variability of Autocorrelation Maps with Intrathoracic Heart Position,” In Int. J. Bioelectromag., Vol. 5, No. 1, pp. 139--140. 2003.


W. Correa, J. Klosowski, C.T. Silva. “Visibility-Based Prefetching for Interactive Out-Of-Core Rendering,” In Proceedings of the 2003 IEEE Symposium on Parallel and Large-Data Visualization and Graphics, pp. 2. 2003.
ISBN: 0-7695-2091-X


W. Correa, J. Klosowski, C.T. Silva. “Out-Of-Core Sort-First Parallel Rendering for Cluster-Based Tiled Displays,” In Parallel Computing, Vol. 29, No. 3, pp. 325--338. 2003.


K. Damevski, S.G. Parker. “Parallel Remote Method Invocation and M-by-N Data Redistribution,” In Proceedings of the 4th Los Alamos Computer Science Institute Symposium, pp. (published on CD). 2003.


D.E. DeMarle, S.G. Parker, M. Hartner, C. Gribble, C.D. Hansen. “Distributed Interactive Ray Tracing for Large Volume Visualization,” In IEEE Symposium on Parallel Visualization and Graphics, Seattle, Wa., pp. 87--94. October, 2003.


C.C. Douglas, M. Cole, Y. Efendiev, R. Ewing, V. Ginting, C.R. Johnson, G.M. Jones, R. Lazarov, C. Shannon, J. Simpson. “Workshop on Dynamic Data-Driven Application Systems,” In ICCS 2003, Melbourne, Australia, June 2-3, 2003.


C.C. Douglas, C.E. Shannon, Y. Efendiev, R.E. Ewing, V. Ginting, R. Lazanov, M.J. Cole, G.M. Jones, C.R. Johnson, J. Simpson. “A Note on Dynamic Data Driven Application Simulation (DDDAS) Using Virtual Telemetry,” In International Conference on Parallel Algorithms and Computing Environments, pp. pp.193--198. 2003.


H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Morse Complexes for Piecewise Linear 3-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-PROC-208698, pp. 361--370. June, 2003.


R. Fairlie, C.E. Goodyer, M. Berzins, L.E. Scales. “Numerical Modelling of Thermal Effects in Elastohydrodynamic Lubrication Solvers,” In Tribological Research and Design for Engineering Systems, Proceedings of the 29th Leeds-Lyon Symposium on Tribology, Edited by D. Dowson et al., Elsevier, pp. 675--683. 2003.


P.T. Fletcher, S. Joshi, C. Lu, S. Pizer. “Gaussian Distributions on Lie Groups and Their Application to Statistical Shape Analysis,” In Inf Process Med Imaging, Vol. 18, Note: Runner-up for the Francois Erbsmann Prize, pp. 450--462. 2003.


P.T. Fletcher, C. Lu, S. Joshi. “Statistics of Shape via Principal Component Analysis on Lie Groups,” In Proceedings of the Conference on Computer Vision and Pattern Recognition (CVPR), Los Alamitos, CA, pp. 95--101. June, 2003.


S. Fleishman, M. Alexa, D. Cohen-Or, C.T. Silva. “Progressive Point Set Surfaces,” In ACM Transactions on Graphics (TOG), Vol. 22, No. 4, pp. 997--1011. 2003.
ISSN: 0730-0301


J. Freire, J. Simeon. “Adaptive XML Shredding: Architecture, Implementation, and Challenges,” In Efficiency and Effectiveness of XML Tools and Techniques and Data Integration over the Web, Lecture Notes in Computer Science (LNCS), Vol. 2590/2008, pp. 104--116. 2003.


L.E. Fried, R. Manaa, J.P. Lewis. “Modeling the Reactions of Energetic Materials in the Condensed Phase,” In Overviews of Recent Research on Energetic Materials, Edited by D. Thompson and T. Brill and R. Shaw, 2003.