SCI Publications
2000
Y. Livnat, S.G. Parker, C.R. Johnson.
“Fast Isosurface Extraction Methods for Large Image Data Sets,” In Handbook of Medical Imaging, Edited by A.N. Bankman, Academic Press, San Diego, CA pp. 731--745. Nov, 2000.
S.G. Parker, M. Miller, C.D. Hansen, C.R. Johnson.
“Computational Steering and the SCIRun Integrated Problem Solving Environment,” In Proceedings of Dagstuhl 1997 Workshop on Scientific Visualization, Note: Invited and peer reviewed, Edited by Hans Hagen and Greg Nielson and Frits Post, pp. 257--266. 2000.
D.M. Weinstein, L. Zhukov, C.R. Johnson.
“Lead-Field Bases for EEG Source Imaging,” In Annal. Biomed. Eng., Vol. 28, No. 9, pp. 1059--1065. Sep, 2000.
D.M. Weinstein, L. Zhukov, C.R. Johnson.
“An Inverse EEG Problem Solving Environment and its Applications to EEG Source Localization,” In NeuroImage (suppl.), pp. 921. 2000.
D.M. Weinstein, L. Zhukov, C.R. Johnson, S.G. Parker, R. Van Uitert, R.S. MacLeod, C.D. Hansen.
“Interactive Source Imaging with BioPSE,” In Chicago 2000 World Congress on Medical Physics and Biomedical Engineering, Chicago, IL., Note: Refereed abstract., July, 2000.
D.M. Weinstein, P. Krysl, C.R. Johnson.
“The BioPSE Inverse EEG Modeling Pipeline,” In ISGG 7th International Conference on Numerical Grid Generation in Computation Field Simulations, The International Society of Grid Generation, Mississippi State University pp. 1091--1100. 2000.
R. Westermann, C.R. Johnson, T. Ertl.
“A Level-Set Method for Flow Visualization,” In Proceeding of IEEE Visualization 2000, IEEE Computer Society, Salt Lake City pp. 147--154. 2000.
L. Zhukov, D. Weinstein, C.R. Johnson.
“Statistical Analysis For FEM EEG Source Localization in Realistic Head Models,” School of Computing Technical Report, No. UUCS-2000-003, University of Utah, February, 2000.
L. Zhukov, D.M. Weinstein, C.R. Johnson.
“Reciprocity Basis for EEG Source Imaging,” In NeuroImage (suppl.), pp. 598. 2000.
L. Zhukov, D. Weinstein, C.R. Johnson.
“Independent Component Analysis for EEG Source Localization in Realistic Head Models,” In IEEE Engineering in Medicine and Biology, Vol. 19, No. 3, pp. 87--96. 2000.
1999
D. Botstein, L. Smarr, D. Agard, M. Levitt, D. Lippman, D. Herrington, C.R. Johnson, G Rose, G. Rubin, A. Levison, M. Spence, H. Smith, C. Peskin, G. Jacobs.
“NIH Biomedical Information Science and Technology Initiative (BISTI),” Note: Prepared by the Working Group on Biomedical Computing Advisory Committee to the Director, National Institutes of Health, July, 1999.
The biomedical community is increasingly taking advantage of the power of computing, both to manage and analyze data, and to model biological processes. The working group should investigate the needs of NIH-supported investigators for computing resources, including hardware, software, networking, algorithms, and training. It should take into account efforts to create a national information infrastructure, and look at working with other agencies (particularly NSF and DOE) to ensure that the research needs of the NIH-funded community are met.
It should also investigate the impediments biologists face in utilizing high-end computing, such as a paucity of researchers with cross-disciplinary skills. The panel should consider both today's unmet needs and the growing requirements over the next five years (a reasonable horizon for extrapolating the advances in the rapidly changing fields of computing and computational biology).
The result of deliberations should be a report to the NIH Director, which will be presented to the Advisory Committee to the Director. The report should include recommendations for NIH actions to support the growing needs of NIH-funded investigators for biomedical computing.
C.R. Johnson, S.G. Parker.
“The SCIRun Parallel Scientific Computing Problem Solving Environment,” In Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999.
C.R. Johnson, S.G. Parker, C.D. Hansen, G.L. Kindlmann, Y. Livnat.
“Interactive Simulation and Visualization,” In IEEE Computer, Vol. 32, No. 12, pp. 59--65. Dec, 1999.
M. Miller, C.D. Hansen, C.R. Johnson.
“The SCIRun Problem Solving Environment: Implementation within a Distributed Environment,” In Ninth SIAM Conference on Parallel Processing for Scientific Computing, Note: extended abstract, 1999.
D.M. Weinstein, L. Zhukov, C.R. Johnson.
“Lead Field Basis for FEM Source Localization,” School of Computing Technical Report, No. UUCS-99-014, University of Utah, Salt Lake City, UT October, 1999.
L. Zhukov, D.M. Weinstein, C.R. Johnson.
“Independent Component Analysis For EEG Source Localization In Realistic Head Models,” In Third International Conference on Inverse Problems in Engineering, 1999.
1998
C.R. Johnson, R.S. MacLeod.
“Adaptive local regularization methods for the inverse ECG problem,” In Progress in Biophysics and Biochemistry, Vol. 69, No. 2/3, pp. 405. Dec, 1998.
C.R. Johnson.
“Computer Visualization in Medicine,” In National Forum, Vol. Fall, pp. 17--21. 1998.
C.R. Johnson, M. Berzins, L. Zhukov, R. Coffey.
“SCIRun: Applications to Atmospheric Diffusion Using Unstructured Meshes,” In Numerical Methods for Fluid Dynamics VI, Edited by M.J. Baines, Oxford University Press, pp. 111--122. 1998.
M. Miller, C.D. Hansen, C.R. Johnson.
“Simulation Steering with SCIRun in a Distributed Memory Environment,” In Lecture Notes in Computer Science, Springer-Verlag, In Applied Parallel Computing, 4th International Workshop, PARA'98, Lecture Notes in Computer Science, Vol. 1541, Edited by B. Kagstrom and J. Dongarra and E. Elmroth and J. Wasniewski, Springer-Verlag, Berlin pp. 366--376. 1998.