Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

Events on April 23, 2024

Kesheng (John) Wu

Kesheng (John) Wu Presents:

Keshing (John) Wu Faculty Candidate Interview

April 23, 2024 at 11:00am for 1hr
Evans Conference Room, WEB 3780
Warnock Engineering Building, 3rd floor.

Kesheng (John) Wu, specializes in data management and high-performance computing, with a focus on optimizing data access and services. His FastBit software, recipient of an R&D 100 Award, is globally utilized to accelerate molecular docking software and enable terabyte-scale data analysis. Recognized by the US Department of Energy (DOE) during its 40th Anniversary celebration, FastBit reflects John's dedication to enhancing data accessibility and storage efficiency through innovative algorithms and data structures for cutting-edge computing systems.

Abstract:

This seminar introduces a set of innovative techniques to reduce the time required for completing distributed scientific workflows, aiming to achieve response times in milliseconds. Current near-real-time experiments fall short of meeting stringent DOE requirements for Integrated Research Infrastructure (IRI) outlined in the recent reports. The proposed solution leverages data management strategies that exploit high-performance computing (HPC) facilities and advanced storage technologies, addressing challenges in cost and efficiency.

Key components include an object-based data management approach, enabling users to define semantically meaningful data objects and facilitating efficient data operations across wide-area networks. The distributed object store could orchestrate in-memory objects, reducing data management and transfer times while enabling automatic parallelization of analyses on HPC resources. The impact of this work extends to diverse scientific domains, including mineral resource surveys, light source management, and material synthesis control, enabling seamless distributed data processing and reducing dependency on custom computing resources.

Posted by: Kate Craven