Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

revisitThe Scientific Computing and Imaging (SCI) Institute today announced the launch of reVISit, a National Science Foundation–backed infrastructure project that empowers visualization researchers to create and maintain ownership of sophisticated user studies.

ReVISit is a free, open-source platform that allows researchers to observe how users engage with online visualizations—from images to forms to interactive websites—and share the results for others to use, which is difficult to accomplish with existing paid software. “With a commercial tool, you can't share exactly what you've done—you can't just give other people a copy of it,” said Alexander Lex, a SCI faculty member and an associate professor in the Kahlert School of Computing. Such tools can also be cost prohibitive. “That adds hurdles for doing open, reproducible science.”

The National Science Foundation awarded reVISit nearly $2 million starting in summer 2022. Since then, the reVISit team—led by Lex and co–principal investigators Lane Harrison of Worcester Polytechnic Institute (WPI) and Carolina Nobre of the University of Toronto—has often completed chunks of work during in-person hackathons. SCI and WPI students as well as Jack Wilburn and Brian Bollen, members of the SCI Cyberinfrastructure Professionals Cooperative, were key in reVISit’s development. The project’s affiliation with SCI, Wilburn said, has allowed the team to tap into a wider network of collaborators, ultimately improving the product. “We’ve gone through a few revisions with beta testing and finally landed on something we really like,” he said. “As developers, we’ve built a stable base where research can grow, and we’ve given researchers sovereignty over their own data. We love that about it."

As the first public version of reVISit launches, team members look to their peers to use it and provide feedback. “We hope that people not only adopt it, but also contribute to it,” Lex said. “To that end, we've invested a lot of energy in documentation and tutorials and making it accessible.” They’ve also made it easy to connect with reVISit developers, including via Slack and GitHub.

The reVISit team is already busy working on new features, including a think-aloud protocol in which people use an interface and provide spoken, real-time feedback instead of typing it out. Other future functionality may include eye tracking and the ability to conduct studies on mobile devices and virtual/augmented reality devices. “We’ll add capabilities based on input from the community,” Lex said. “We’re excited to keep broadening reVISit’s scope and further democratize visualization studies.”

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The reVISit team during a hackathon at Worcester Polytechnic Institute on April 26. From left to right: Alexander Lex, Brian Bollen, Jack Wilburn, Zach Cutler, Lane Harrison, Yiren Ding, and Hilson Shrestha.

Read more about reVISit’s launch and how to use the groundbreaking tool.