/trunk/src Developers: jas

Login name:
jas
Total Commits:
4,550 (34.1%)
Lines of Code:
4,741 (2.8%)
Most Recent Commit:
2016-09-27 15:13
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 4550 (100.0%) 4741 (100.0%) 1.0
Core/Util/ 127 (2.8%) 424 (8.9%) 3.3
CCA/Components/DataArchiver/ 10 (0.2%) 290 (6.1%) 29.0
Core/Grid/ 119 (2.6%) 240 (5.1%) 2.0
Core/Thread/ 165 (3.6%) 197 (4.2%) 1.1
Core/Datatypes/ 143 (3.1%) 193 (4.1%) 1.3
Core/Geometry/ 96 (2.1%) 191 (4.0%) 1.9
Core/Grid/Variables/ 196 (4.3%) 159 (3.4%) 0.8
CCA/Components/Arches/ 103 (2.3%) 157 (3.3%) 1.5
Core/Math/ 149 (3.3%) 156 (3.3%) 1.0
Core/DataArchive/ 11 (0.2%) 155 (3.3%) 14.0
CCA/Components/MPM/ConstitutiveModel/PlasticityModels/ 250 (5.5%) 126 (2.7%) 0.5
Core/Containers/ 70 (1.5%) 105 (2.2%) 1.5
CCA/Components/Wasatch/Expressions/ 93 (2.0%) 90 (1.9%) 0.9
CCA/Components/MPM/ConstitutiveModel/ 131 (2.9%) 90 (1.9%) 0.6
Core/Exceptions/ 103 (2.3%) 84 (1.8%) 0.8
CCA/Components/Schedulers/ 74 (1.6%) 83 (1.8%) 1.1
Core/GeometryPiece/ 121 (2.7%) 80 (1.7%) 0.6
CCA/Components/Arches/Radiation/ 22 (0.5%) 79 (1.7%) 3.5
CCA/Components/Wasatch/ 67 (1.5%) 61 (1.3%) 0.9
Core/Persistent/ 25 (0.5%) 59 (1.2%) 2.3
CCA/Components/MPM/ConstitutiveModel/Biswajit/Models/ 106 (2.3%) 53 (1.1%) 0.5
CCA/Components/MPM/ConstitutiveModel/UnusedCM/ 75 (1.6%) 51 (1.1%) 0.6
CCA/Components/Examples/ 70 (1.5%) 51 (1.1%) 0.7
include/sci_defs/ 67 (1.5%) 44 (0.9%) 0.6
testprograms/TestConsecutiveRangeSet/ 6 (0.1%) 40 (0.8%) 6.6
Core/Grid/BoundaryConditions/ 70 (1.5%) 40 (0.8%) 0.5
CCA/Ports/ 57 (1.3%) 38 (0.8%) 0.6
StandAlone/tools/dumpfields/ 65 (1.4%) 36 (0.8%) 0.5
StandAlone/tools/puda/ 68 (1.5%) 35 (0.7%) 0.5
Core/Malloc/ 24 (0.5%) 34 (0.7%) 1.4
CCA/Components/Arches/fortran/ 65 (1.4%) 34 (0.7%) 0.5
CCA/Components/ICE/PressureSolve/HypreStandAlone/ 62 (1.4%) 33 (0.7%) 0.5
CCA/Components/Wasatch/Transport/ 45 (1.0%) 32 (0.7%) 0.7
CCA/Components/Models/FluidsBased/ 53 (1.2%) 30 (0.6%) 0.5
CCA/Components/MPM/ConstitutiveModel/Biswajit/ElasticityModels/ 60 (1.3%) 30 (0.6%) 0.5
CCA/Components/MPM/Crack/ 54 (1.2%) 29 (0.6%) 0.5
CCA/Components/MPM/ 46 (1.0%) 29 (0.6%) 0.6
CCA/Components/ICE/EOS/ 57 (1.3%) 29 (0.6%) 0.5
testprograms/Thread/ 11 (0.2%) 28 (0.6%) 2.5
CCA/Components/MPM/PhysicalBC/ 38 (0.8%) 28 (0.6%) 0.7
Core/Math/TntJama/ 49 (1.1%) 26 (0.5%) 0.5
CCA/Components/OnTheFlyAnalysis/ 29 (0.6%) 26 (0.5%) 0.8
CCA/Components/LoadBalancers/ 35 (0.8%) 26 (0.5%) 0.7
CCA/Components/ICE/CustomBCs/ 30 (0.7%) 25 (0.5%) 0.8
testprograms/TestBoxGrouper/ 19 (0.4%) 24 (0.5%) 1.2
Core/Parallel/ 29 (0.6%) 24 (0.5%) 0.8
CCA/Components/ProblemSpecification/ 5 (0.1%) 24 (0.5%) 4.8
CCA/Components/ICE/ 36 (0.8%) 24 (0.5%) 0.6
CCA/Components/Arches/Radiation/fortran/ 46 (1.0%) 24 (0.5%) 0.5
build_scripts/ 42 (0.9%) 23 (0.5%) 0.5
Core/Disclosure/ 10 (0.2%) 23 (0.5%) 2.3
CCA/Components/Models/SolidReactionModel/ 46 (1.0%) 23 (0.5%) 0.5
CCA/Components/Models/HEChem/ 43 (0.9%) 23 (0.5%) 0.5
CCA/Components/MPM/Contact/ 40 (0.9%) 22 (0.5%) 0.5
CCA/Components/Wasatch/Operators/ 14 (0.3%) 20 (0.4%) 1.4
testprograms/Malloc/ 28 (0.6%) 19 (0.4%) 0.6
CCA/Components/Solvers/AMR/HypreSolvers/ 37 (0.8%) 19 (0.4%) 0.5
CCA/Components/ICE/Advection/ 24 (0.5%) 18 (0.4%) 0.7
StandAlone/tools/mpi_test/ 6 (0.1%) 17 (0.4%) 2.8
Core/OS/ 20 (0.4%) 17 (0.4%) 0.8
CCA/Components/Models/Radiation/RMCRT/ 14 (0.3%) 17 (0.4%) 1.2
CCA/Components/MPM/ReactionDiffusion/ 18 (0.4%) 17 (0.4%) 0.9
/ 12 (0.3%) 17 (0.4%) 1.4
CCA/Components/Wasatch/Expressions/PBE/Precipitation/ 29 (0.6%) 16 (0.3%) 0.5
CCA/Components/ICE/TurbulenceModel/ 21 (0.5%) 16 (0.3%) 0.7
testprograms/TestRangeTree/ 8 (0.2%) 15 (0.3%) 1.8
CCA/Components/SwitchingCriteria/ 23 (0.5%) 15 (0.3%) 0.6
CCA/Components/MPMArches/fortran/ 30 (0.7%) 15 (0.3%) 0.5
CCA/Components/MPM/ConstitutiveModel/Biswajit/ 20 (0.4%) 15 (0.3%) 0.7
CCA/Components/Wasatch/Expressions/BoundaryConditions/ 22 (0.5%) 14 (0.3%) 0.6
CCA/Components/Solvers/AMR/ 18 (0.4%) 14 (0.3%) 0.7
CCA/Components/Solvers/AMR/HyprePreconds/ 24 (0.5%) 13 (0.3%) 0.5
CCA/Components/ICE/SpecificHeatModel/ 25 (0.5%) 13 (0.3%) 0.5
StandAlone/tools/graphview/ 14 (0.3%) 12 (0.3%) 0.8
StandAlone/tools/compare_mms/ 22 (0.5%) 12 (0.3%) 0.5
StandAlone/ 14 (0.3%) 12 (0.3%) 0.8
CCA/Components/Wasatch/Expressions/Turbulence/ 19 (0.4%) 12 (0.3%) 0.6
CCA/Components/Wasatch/Expressions/PBE/ 21 (0.5%) 12 (0.3%) 0.5
CCA/Components/MPMArches/ 19 (0.4%) 12 (0.3%) 0.6
CCA/Components/Arches/ChemMix/ 15 (0.3%) 12 (0.3%) 0.8
StandAlone/tools/extractors/ 17 (0.4%) 11 (0.2%) 0.6
CCA/Components/Wasatch/Expressions/PostProcessing/ 17 (0.4%) 11 (0.2%) 0.6
CCA/Components/Solvers/ 17 (0.4%) 11 (0.2%) 0.6
CCA/Components/SimulationController/ 7 (0.2%) 11 (0.2%) 1.5
CCA/Components/MPM/ParticleCreator/ 18 (0.4%) 11 (0.2%) 0.6
CCA/Components/Regridder/ 15 (0.3%) 10 (0.2%) 0.6
Core/Grid/PatchBVH/ 16 (0.4%) 9 (0.2%) 0.5
CCA/Components/MPM/ThermalContact/ 18 (0.4%) 9 (0.2%) 0.5
CCA/Components/ICE/WallShearStressModel/ 18 (0.4%) 9 (0.2%) 0.5
CCA/Components/Arches/Operators/ 1 (0.0%) 9 (0.2%) 9.0
Core/IO/ 14 (0.3%) 8 (0.2%) 0.5
testprograms/TestSuite/ 12 (0.3%) 7 (0.1%) 0.5
Core/ProblemSpec/ 7 (0.2%) 7 (0.1%) 1.0
Core/Labels/ 13 (0.3%) 7 (0.1%) 0.5
CCA/Components/Wasatch/Expressions/EmbeddedGeometry/ 13 (0.3%) 7 (0.1%) 0.5
include/ 8 (0.2%) 6 (0.1%) 0.7
testprograms/TestFastMatrix/ 6 (0.1%) 5 (0.1%) 0.8
testprograms/Regridders/ 7 (0.2%) 5 (0.1%) 0.7
StandAlone/tools/pfs/ 8 (0.2%) 5 (0.1%) 0.6
Core/Containers/doc/ 10 (0.2%) 5 (0.1%) 0.5
CCA/Components/Wasatch/Expressions/MMS/ 7 (0.2%) 5 (0.1%) 0.7
CCA/Components/Parent/ 9 (0.2%) 5 (0.1%) 0.5
CCA/Components/MPM/HeatConduction/ 8 (0.2%) 5 (0.1%) 0.6
CCA/Components/MPM/ConstitutiveModel/fortran/ 10 (0.2%) 5 (0.1%) 0.5
CCA/Components/MPM/CohesiveZone/ 10 (0.2%) 5 (0.1%) 0.5
StandAlone/tools/uda2vis/ 4 (0.1%) 4 (0.1%) 1.0
CCA/Components/Wasatch/Expressions/Particles/ 3 (0.1%) 4 (0.1%) 1.3
CCA/Components/MPMICE/ 6 (0.1%) 4 (0.1%) 0.6
CCA/Components/Arches/CoalModels/ 1 (0.0%) 4 (0.1%) 4.0
testprograms/TestMatrix3/ 5 (0.1%) 3 (0.1%) 0.6
testprograms/RegionTest/ 6 (0.1%) 3 (0.1%) 0.5
testprograms/ 4 (0.1%) 3 (0.1%) 0.7
VisIt/libsim/ 3 (0.1%) 3 (0.1%) 1.0
CCA/Components/ReduceUda/ 3 (0.1%) 3 (0.1%) 1.0
CCA/Components/Models/Radiation/RMCRT/randomNums/ 3 (0.1%) 3 (0.1%) 1.0
CCA/Components/Models/ 5 (0.1%) 3 (0.1%) 0.6
CCA/Components/MPM/MMS/ 4 (0.1%) 3 (0.1%) 0.7
CCA/Components/Arches/TransportEqns/ 3 (0.1%) 3 (0.1%) 1.0
tools/ 4 (0.1%) 2 (0.0%) 0.5
testprograms/SFCTest/ 2 (0.0%) 2 (0.0%) 1.0
testprograms/PatchBVH/ 4 (0.1%) 2 (0.0%) 0.5
testprograms/IteratorTest/ 4 (0.1%) 2 (0.0%) 0.5
testprograms/CubeRootTest/ 4 (0.1%) 2 (0.0%) 0.5
scripts/MPM/ 4 (0.1%) 2 (0.0%) 0.5
scripts/ 4 (0.1%) 2 (0.0%) 0.5
VisIt/ 2 (0.0%) 2 (0.0%) 1.0
StandAlone/tools/makedot/ 2 (0.0%) 2 (0.0%) 1.0
StandAlone/tools/ 2 (0.0%) 2 (0.0%) 1.0
StandAlone/Benchmarks/ 4 (0.1%) 2 (0.0%) 0.5
Core/Math/doc/ 4 (0.1%) 2 (0.0%) 0.5
Core/Datatypes/doc/ 4 (0.1%) 2 (0.0%) 0.5
Core/ 2 (0.0%) 2 (0.0%) 1.0
CCA/Components/MPM/ConstitutiveModel/PortableTongeRamesh/ 3 (0.1%) 2 (0.0%) 0.6
tools/StackTrace/ 1 (0.0%) 1 (0.0%) 1.0
include/compat/ 2 (0.0%) 1 (0.0%) 0.5
StandAlone/tools/fsspeed/ 1 (0.0%) 1 (0.0%) 1.0
CCA/Components/Models/Radiation/ 2 (0.0%) 1 (0.0%) 0.5
CCA/Components/MPM/ConstitutiveModel/PortableTongeRamesh/TongeRameshPTRCalcs/ 2 (0.0%) 1 (0.0%) 0.5
CCA/Components/Arches/DigitalFilter/ 2 (0.0%) 1 (0.0%) 0.5
CCA/Components/Arches/CoalModels/fortran/ 2 (0.0%) 1 (0.0%) 0.5
CCA/Components/ 1 (0.0%) 1 (0.0%) 1.0
CCA/ 2 (0.0%) 1 (0.0%) 0.5

Activity of jas

Most Recent Commits

jas 2016-09-27 15:13 Rev.: 55806

Change map<const int,. . > to map<int,. . > to fix compiler error with clang 3.9 on mira.

5 lines of code changed in 4 files:

  • CCA/Components/Arches: BoundaryCondition.h (+2 -2), ExplicitSolver.cc (+1 -1)
  • CCA/Components/Arches/TransportEqns: EqnBase.h (+2 -2)
jas 2016-09-14 17:23 Rev.: 55747

Add missing MPMFVM library.

0 lines of code changed in 2 files:

  • CCA/Components/Parent: sub.mk (new)
jas 2016-09-08 11:36 Rev.: 55719

Turn off introspection.

1 lines of code changed in 1 file:

  • build_scripts: build_wasatch_3p.sh (+1 -1)
jas 2016-08-05 12:17 Rev.: 55575

Adds an additional preprocessor define to handle the case between cblas.h from macports and the native MacOSX native veclib.

4 lines of code changed in 3 files:

  • configVars.mk.in (+1)
  • include/sci_defs: blas_testdefs.h.in (+3 -2)
jas 2016-07-20 12:18 Rev.: 55529

Add the HYPRE library, since impICE uses it.

0 lines of code changed in 2 files:

  • CCA/Components/ICE: sub.mk (new)
jas 2016-03-16 12:05 Rev.: 55042

Remove unused files.

0 lines of code changed in 5 files:

  • Core/Util: ProgressReporter.cc (del), ProgressReporter.h (del), Socket.cc (del), Socket.h (del), sub.mk (-2)
jas 2016-03-15 20:40 Rev.: 55039

Add Uintah namespace.

0 lines of code changed in 2 files:

  • Core/Malloc: new.cc (changed)
jas 2016-03-15 20:20 Rev.: 55038

Add using namespace Uintah.

2 lines of code changed in 1 file:

  • Core/Malloc: malloc.cc (+2)
jas 2016-03-15 18:40 Rev.: 55037

Add Uintah namespace.

1 lines of code changed in 1 file:

  • Core/OS: Dir.cc (+1)
jas 2016-03-15 18:26 Rev.: 55036

Eliminate SCIRun namespace usage.

6 lines of code changed in 5 files:

  • CCA/Components/Arches/CoalModels: CharOxidationShaddix.h (+4 -4)
  • CCA/Components/DataArchiver: DataArchiver.cc (+1 -1)
  • CCA/Ports: PIDXOutputContext.cc (+1 -1)
  • Core/Grid/BoundaryConditions: RectangulusBCData.cc (-1), RectangulusBCData.h (-1)
jas 2016-03-15 18:26 Rev.: 55035

Remove old SCIRun TypeDescription and all traces of the SCIRun namespace.

3 lines of code changed in 16 files:

  • Core/Disclosure: TypeUtils.cc (-11)
  • Core/Geometry: IntVector.cc (-16), Point.cc (-14), Tensor.cc (new), Vector.cc (-13)
  • Core/GeometryPiece: GeometryPieceFactory.h (+1 -1)
  • Core/Math: Matrix3.cc (-10), Matrix3.h (-6), Short27.cc (-14)
  • Core/Util: TypeDescription.cc (del), TypeDescription.h (del), sub.mk (+2 -2)
jas 2016-03-15 18:26 Rev.: 55034

Add Uintah namespace, remove __digital__ reference.

2 lines of code changed in 1 file:

  • testprograms/Malloc: test15.cc (new 2)
jas 2016-03-15 18:25

Remove unused classes.

0 lines of code changed in 16 files:

  • Core/Containers: Array3.h (del), Handle.h (del), LinearArray3.cc (del), LinearArray3.h (del), Octree.h (del), Sort.cc (del), Sort.h (del), StackVector.h (del), sub.mk (-2)
  • Core/Math: CubicPWI.cc (del), CubicPWI.h (del), LinearPWI.cc (del), LinearPWI.h (del), PiecewiseInterp.cc (del), PiecewiseInterp.h (del), sub.mk (-3)
jas 2016-03-15 18:25

Simplify the SCIRun TypeDescription class.

190 lines of code changed in 11 files:

  • Core/Disclosure: TypeUtils.cc (+1 -1)
  • Core/Geometry: IntVector.cc (+1 -6), Point.cc (+1 -7), Tensor.cc (+1 -8), Vector.cc (+1 -7)
  • Core/Math: Matrix3.cc (+1 -6), Short27.cc (+1 -6)
  • Core/Util: TypeDescription.cc (+13 -37), TypeDescription.h (new 52)
jas 2016-03-15 18:25 Rev.: 55029

More changes from SCIRun to Uintah. Delete unused SCIRun build_script files.

26 lines of code changed in 25 files:

  • aclocal.m4 (+5 -5), configVars.mk.in (-3)
  • Core/Containers: HashTable.h (+2 -2)
  • Core/DataArchive: DataArchive.cc (+1 -1), DataArchive.h (+2 -2)
  • Core/Malloc: testmem_init.h.in (+1 -1)
  • Core/Parallel: Parallel.cc (+3 -3)
  • Core/Util: sci_system.cc (+4 -4)
  • StandAlone/tools/compare_mms: compare_scalar.cc (+1 -1)
  • VisIt/libsim: visit_libsim.cc (+1 -1), visit_libsim_callbacks.cc (+1 -1), visit_libsim_customUI.cc (+1 -1)
  • build_scripts: LevelSetSegmenter (del), cd_templates_fields.py (del), createTclIndex.in (del), field_dispatch_macro.py (del), repair.sh (+1 -1), tclIndex.mk (del)
  • testprograms/Malloc: test14.cc (new)
  • tools: checkForUnusedVarLabels (+1 -1)
jas 2016-03-15 18:25 Rev.: 55028

Remove Persistent class and all references to it.

68 lines of code changed in 47 files:

  • Makefile.in (-2)
  • Core: sub.mk (+1 -7)
  • Core/Containers: HashTable.h (-1), LockingHandle.h (+1)
  • Core/Datatypes: ColumnMatrix.cc (-6), ColumnMatrix.h (new), Datatype.cc (+1), Datatype.h (+1 -2), DenseColMajMatrix.cc (-6), DenseColMajMatrix.h (new), DenseMatrix.cc (-5), DenseMatrix.h (new), LockArray3.h (new 52), Matrix.cc (new), Matrix.h (+3 -4), MatrixOperations.cc (new), PropertyManager.cc (del), PropertyManager.h (del), SparseRowMatrix.cc (-9), SparseRowMatrix.h (new), builtin.h (-1), sub.mk (+1 -3)
  • Core/Geometry: IntVector.cc (-1), Point.cc (-1), Tensor.cc (-1), Vector.cc (-1), sub.mk (new)
  • Core/Math: sub.mk (+1 -2)
  • Core/Persistent: Persistent.cc (del), Persistent.h (del), Pstreams.cc (del), Pstreams.h (del), sub.mk (del)
  • Core/Util: DynamicLoader.cc (del), DynamicLoader.h (del), TypeDescription.cc (-34), TypeDescription.h (-2), sub.mk (-1)
jas 2016-03-15 18:25 Rev.: 55027

Remove CompGeom class.

0 lines of code changed in 9 files:

  • Core/Geometry: CompGeom.cc (del), CompGeom.h (del), Polygon.cc (del), Polygon.h (del), Quaternion.cc (del), Quaternion.h (del), Transform.cc (del), Transform.h (del)
  • Core/Math: sub.mk (-2)
jas 2016-03-15 18:25 Rev.: 55026

Remove Transform class and PersistentSTL.

41 lines of code changed in 18 files:

  • Core/Datatypes: DenseColMajMatrix.h (-1), DenseMatrix.cc (-16), DenseMatrix.h (-2), Matrix.cc (-16), Matrix.h (-2), PropertyManager.h (new 23), TypeName.cc (new), TypeName.h (+2 -2)
  • Core/Geometry: Quaternion.cc (new 13), Quaternion.h (new 2), Vector.h (new)
  • Core/Math: sub.mk (-2)
  • Core/Persistent: PersistentSTL.cc (del), PersistentSTL.h (del), sub.mk (new 1)
jas 2016-03-15 18:25 Rev.: 55025

Remove persistent I/O calls from various classes.

65 lines of code changed in 51 files:

  • Core/Containers: Array1.h (-39), Array2.h (new), Array3.h (new 3), Handle.h (new 4), HashTable.h (+4 -9)
  • Core/DataArchive: DataArchive.h (+2 -2)
  • Core/Datatypes: ColumnMatrix.cc (-26), ColumnMatrix.h (+1 -1), DenseColMajMatrix.cc (-89), DenseColMajMatrix.h (-1), DenseMatrix.cc (-96), DenseMatrix.h (+1 -1), LockArray3.h (+1 -49), Matrix.cc (-13), Matrix.h (-1), PropertyManager.cc (new 2), PropertyManager.h (+1 -22), SparseRowMatrix.cc (-45), SparseRowMatrix.h (-1), builtin.h (-9), templates.cc (new 2)
  • Core/Geometry: BBox.cc (-17), BBox.h (-2), IntVector.cc (-9), IntVector.h (-2), Point.cc (-9), Point.h (-3), Quaternion.cc (-11), Quaternion.h (+1 -1), Tensor.cc (-27), Tensor.h (new), Transform.cc (new 17), Transform.h (new 2), Vector.cc (-10), Vector.h (+1 -3)
  • Core/Math: Matrix3.cc (-9), Matrix3.h (+1 -3), Short27.cc (-15), Short27.h (new)
  • Core/Persistent: Persistent.cc (new 6), Persistent.h (new 9), PersistentSTL.cc (new 2), PersistentSTL.h (new 2)
jas 2016-03-15 18:24 Rev.: 55024

Move non-conflicting classes that were in SCIRun namespace to Uintah namespace.

1633 lines of code changed in 903 files:

  • CCA/Components/Arches: Arches.cc (+1 -1), BoundaryCondition.cc (+1 -1), CellInformation.h (+84 -84), Discretization.h (+1 -1), ExplicitSolver.cc (+1 -1), Filter.h (-1), IntrusionBC.cc (+1 -1), PetscCommon.cc (+2 -2), PhysicalConstants.h (new), Source.h (-1)
  • CCA/Components/Arches/ChemMix: ClassicTableInterface.h (+1 -1), MixingRxnModel.h (+1 -1)
  • CCA/Components/Arches/Operators: Operators.cc (+9 -9)
  • CCA/Components/Arches/Radiation: DORadiationModel.h (+6 -6), RadHypreSolver.cc (+5 -5), RadHypreSolver.h (-1), RadPetscSolver.h (-1), RadPropertyCalculator.cc (+24 -24), RadPropertyCalculator.h (+32 -32), RadiationSolver.h (-1)
  • CCA/Components/Arches/TransportEqns: EqnBase.h (+1 -1)
  • CCA/Components/DataArchiver: DataArchiver.cc (-1), DataArchiver.h (+2 -2)
  • CCA/Components/Examples: Interpolator.cc (-1), Poisson3.cc (-1), RMCRT_Test.cc (+1 -3), RMCRT_Test.h (+1 -1), RegridderTest.cc (+1 -4), RegridderTest.h (new), UnifiedSchedulerTest.cc (+2 -2)
  • CCA/Components/ICE: BoundaryCond.h (new), ICE.cc (+1 -1), customInitialize.cc (new)
  • CCA/Components/ICE/Advection: Advector.cc (+2 -2), FirstOrderAdvector.cc (+1 -1), FluxDatatypes.h (+2 -1), SecondOrderAdvector.cc (+1 -1), SecondOrderBase.h (-4)
  • CCA/Components/ICE/CustomBCs: LODI.cc (+2 -2), LODI2.h (new), inletVelocity.cc (new), inletVelocity.h (+2 -2), sine.cc (new)
  • CCA/Components/ICE/TurbulenceModel: DynamicModel.cc (+2 -2), DynamicModel.h (new), SmagorinskyModel.cc (+2 -2), SmagorinskyModel.h (+1 -1)
  • CCA/Components/LoadBalancers: CostModelForecaster.cc (-1), CostProfiler.cc (-1), DynamicLoadBalancer.cc (-1), LoadBalancerCommon.cc (+1 -1), ParticleLoadBalancer.cc (-1), ProfileDriver.cc (-1), SimpleLoadBalancer.cc (+2 -2)
  • CCA/Components/MPM: ImpMPMFlags.cc (-1)
  • CCA/Components/MPM/ConstitutiveModel: Arenisca.cc (new), Arenisca3.cc (new), Arenisca4.cc (+1 -1), ElasticPlasticHP.cc (+2 -2), JWLppMPM.cc (new), Kayenta.cc (+1 -1), NonLocalDruckerPrager.cc (+1 -1), ProgramBurn.cc (+1 -1), UCNH.cc (+2 -2), UCNH.h (+2 -2), ViscoPlastic.cc (+1 -1), ViscoScram.cc (+2 -2), ViscoScram.h (+2 -2)
  • CCA/Components/MPM/ConstitutiveModel/Biswajit: HyperelasticPlastic.cc (+2 -2), HyperelasticPlastic.h (new), SmallStrainPlastic.cc (+2 -2)
  • CCA/Components/MPM/ConstitutiveModel/UnusedCM: CNHDamage.cc (+2 -2), CompNeoHookPlas.h (+2 -2), HypoElasticPlastic.cc (new), SmallStrainPlastic.cc (new), ViscoScramForBinder.cc (+2 -2), ViscoScramForBinder.h (+2 -2)
  • CCA/Components/MPM/Contact: ContactMaterialSpec.h (+1 -1), NodalSVFContact.cc (-1)
  • CCA/Components/MPM/Crack: ArcCrack.cc (new), CrackFrontNode.h (new)
  • CCA/Components/MPM/PhysicalBC: ForceBC.h (new), PolynomialData.cc (-1), PolynomialData.h (new)
  • CCA/Components/MPMArches: CutCellInfo.h (-1), MPMArches.cc (+2 -2), MPMArches.h (+1 -2)
  • CCA/Components/MPMICE: CodeAttic (-1)
  • CCA/Components/Models/FluidsBased: ArchesTable.cc (-1), Mixing3.h (new)
  • CCA/Components/Models/Radiation/RMCRT: Ray.cc (+3 -3), RayGPU.cc (+1 -1), RayGPU.cuh (+3 -3)
  • CCA/Components/ProblemSpecification: ProblemSpecReader.cc (+21 -22)
  • CCA/Components/Schedulers: CommRecMPI.cc (+2 -3), DWDatabase.h (+2 -2), DependencyException.h (new), DetailedTasks.cc (+2 -2), DetailedTasks.h (-5), DynamicMPIScheduler.cc (+2 -3), GPUDataWarehouse.cu (+4 -4), GPUDataWarehouse.h (+5 -5), GPUGridVariableInfo.cc (+1 -1), IncorrectAllocation.h (new 1), MPIScheduler.cc (+2 -2), MessageLog.cc (new 1), OnDemandDataWarehouse.cc (+2 -3), OnDemandDataWarehouse.h (+5 -5), Relocate.cc (+1 -2), SchedulerCommon.cc (-1), SendState.cc (-1), SingleProcessorScheduler.cc (-1), TaskGraph.cc (-2), ThreadPool.cc (new 1), ThreadPool.h (new 1), ThreadedMPIScheduler.cc (+2 -2), UnifiedScheduler.cc (+2 -2), Util.cc (+1 -1)
  • CCA/Components/SimulationController: AMRSimulationController.cc (-2), SimulationController.cc (+6 -7)
  • CCA/Components/Solvers: HypreSolver.cc (-2)
  • CCA/Components/Solvers/AMR: AMRSolver.cc (-2), HypreDriver.cc (-2), HypreDriver.h (+4 -4), HypreDriverStruct.cc (-2)
  • CCA/Components/Wasatch: BCHelper.cc (+2 -2), FieldAdaptor.cc (+3 -3), FieldAdaptor.h (+7 -7), ParticlesHelper.cc (+3 -5), TaskInterface.cc (+2 -2), WasatchBCHelper.cc (+2 -2), WasatchParticlesHelper.cc (+1 -1)
  • CCA/Components/Wasatch/Expressions: Coordinate.cc (+3 -3), Coordinate.h (+1 -1), DORadSolver.cc (+5 -5), PoissonExpression.cc (+5 -5), PoissonExpression.h (new), Pressure.cc (+13 -13), Pressure.h (new), ReductionBase.h (new)
  • CCA/Components/Wasatch/Expressions/MMS: Functions.h (+1 -1)
  • CCA/Components/Wasatch/Expressions/PBE: QMOM.h (+1 -1)
  • CCA/Components/Wasatch/Expressions/Particles: ParticleInitialization.h (+3 -3)
  • CCA/Components/Wasatch/Operators: Operators.cc (+10 -10)
  • CCA/Components/Wasatch/Transport: LowMachMomentumTransportEquation.cc (+1 -1), ParseEquation.cc (+1 -1)
  • CCA/Ports: DataWarehouse.cc (-1), Output.h (-1), PIDXOutputContext.cc (+1 -2), PIDXOutputContext.h (+2 -2), Regridder.h (new), SFC.h (+3 -3), SimulationInterface.cc (-1), SimulationInterface.h (-1)
  • Core/Containers: Array1.h (+7 -7), Array2.h (+10 -10), Array3.h (+2 -2), ConsecutiveRangeSet.cc (new), ConsecutiveRangeSet.h (+2 -2), FastHashTable.h (+2 -2), Handle.h (+4 -4), HashTable.h (+2 -54), LinearArray3.cc (new 3), LinearArray3.h (new 2), LockingHandle.h (+3 -32), Octree.h (new 2), OffsetArray1.h (+5 -28), RangeTree.h (+2 -2), RunLengthEncoder.h (+9 -9), Sort.cc (new 2), Sort.h (new 2), StackVector.h (new 2), StaticArray.h (+1 -1), SuperBox.h (+2 -2), templates.cc (new)
  • Core/Containers/doc: AVLTree.txt (del), Args.txt (del), Array1.txt (del), HashTable.txt (del), String.txt (del)
  • Core/DataArchive: DataArchive.cc (+2 -2), DataArchive.h (+4 -5)
  • Core/Datatypes: Archive.cc (del), Archive.h (del), Color.cc (del), Color.h (del), ColumnMatrix.cc (+2 -2), ColumnMatrix.h (+2 -2), Datatype.cc (+2 -2), Datatype.h (+2 -2), DenseColMajMatrix.cc (+2 -2), DenseColMajMatrix.h (+2 -2), DenseMatrix.cc (+2 -2), DenseMatrix.h (+2 -2), FieldIndex.h (del), Image.cc (del), Image.h (del), LockArray3.h (+4 -4), Matrix.cc (+2 -2), Matrix.h (+2 -3), MatrixOperations.cc (+2 -2), MatrixOperations.h (+2 -2), MeshTypes.h (del), PSet.cc (del), PSet.h (del), PointCloudMesh.h (del), PropertyManager.cc (+2 -2), PropertyManager.h (+2 -2), ScalarParticles.cc (del), ScalarParticles.h (del), ScanlineMesh.h (del), SearchGrid.cc (del), SearchGrid.h (del), SparseRowMatrix.cc (+2 -2), SparseRowMatrix.h (+2 -2), String.cc (del), String.h (del), TensorParticles.cc (del), TensorParticles.h (del), TypeName.cc (+2 -2), TypeName.h (+9 -9), VariableCache.cc (del), VariableCache.h (del), VectorParticles.cc (del), VectorParticles.h (del), builtin.h (+2 -2), sub.mk (+1 -11), templates.cc (-1)
  • Core/Datatypes/doc: MeshConcept.h (del), domainDesign.html (del)
  • Core/Disclosure: TypeDescription.cc (-2), TypeUtils.cc (+13 -10), TypeUtils.h (+4 -4)
  • Core/Exceptions: ArrayIndexOutOfBounds.cc (+2 -2), ArrayIndexOutOfBounds.h (new), AssertionFailed.cc (+2 -2), AssertionFailed.h (+2 -2), ConvergenceFailure.cc (new), ConvergenceFailure.h (new), DimensionMismatch.cc (+2 -2), DimensionMismatch.h (new), ErrnoException.cc (+2 -2), ErrnoException.h (new), Exception.cc (+2 -2), Exception.h (+3 -3), FileNotFound.cc (+2 -2), FileNotFound.h (new), GuiException.h (del), IllegalValue.h (+2 -2), InternalError.cc (+2 -2), InternalError.h (new), InvalidCompressionMode.h (new), InvalidGrid.h (+1 -1), InvalidState.h (new), InvalidValue.h (+1 -1), PapiInitializationError.cc (new), PapiInitializationError.h (new), ProblemSetupException.h (+1 -1), TypeMismatchException.h (new), UintahPetscError.h (+1 -1), VariableNotFoundInGrid.cc (new), VariableNotFoundInGrid.h (+2 -2)
  • Core/Geometry: BBox.cc (+3 -3), BBox.h (+3 -3), CompGeom.cc (new 1), CompGeom.h (new 2), GPUVector.h (+2 -2), IntVector.cc (+17 -13), IntVector.h (+3 -3), Plane.cc (new), Plane.h (new), Point.cc (+17 -11), Point.h (+4 -4), Polygon.cc (new 2), Polygon.h (new 2), Quaternion.cc (+2 -2), Quaternion.h (+2 -2), SpecializedRunLengthEncoder.h (+1 -1), Tensor.cc (+17 -13), Tensor.h (+2 -2), Transform.cc (+21 -17), Transform.h (+2 -2), Vector.cc (+16 -12), Vector.h (+4 -4)
  • Core/GeometryPiece: BoxGeometryPiece.cc (new), ConeGeometryPiece.cc (-1), CylinderGeometryPiece.cc (-1), CylinderShellPiece.cc (-1), DifferenceGeometryPiece.cc (-1), EllipsoidGeometryPiece.cc (-1), FileGeometryPiece.cc (-1), GUVSphereShellPiece.cc (-1), GeometryObject.h (new), GeometryPiece.h (new), GeometryPieceFactory.cc (+22 -22), GeometryPieceFactory.h (+4 -4), IntersectionGeometryPiece.cc (new), NaaBoxGeometryPiece.cc (new), NullGeometryPiece.cc (new), PlaneShellPiece.cc (new), ShellGeometryPiece.cc (new), SmoothCylGeomPiece.cc (-1), SmoothGeomPiece.cc (-1), SphereGeometryPiece.cc (-1), SphereMembraneGeometryPiece.cc (new), SphereShellPiece.cc (-1), TorusGeometryPiece.cc (new), TriGeometryPiece.h (-1), UniformGrid.h (new), UnionGeometryPiece.cc (-1)
  • Core/Grid: AMR.cc (-1), AMR.h (+103 -103), AMR_CoarsenRefine.cc (+1 -2), AMR_CoarsenRefine.h (new), AxiGIMPInterpolator.cc (-1), AxiLinearInterpolator.h (-1), BSplineInterpolator.cc (-1), Box.h (-1), DbgOutput.cc (+6 -6), DbgOutput.h (new), GIMPInterpolator.cc (-1), Ghost.cc (new), Ghost.h (+2 -2), Grid.cc (-1), Grid.h (+5 -5), Level.cc (-1), Level.h (+6 -6), LinearInterpolator.h (-1), ParticleInterpolator.h (+3 -3), Patch.cc (+2 -3), Patch.h (+24 -24), PatchRangeTree.cc (-1), PatchRangeTree.h (-1), Region.h (+1 -1), SimpleMaterial.h (-1), SimulationState.h (-1), SimulationTime.cc (+3 -2), TOBSplineInterpolator.cc (-1), Task.cc (+3 -4), Task.h (+2 -2), UnknownVariable.h (+1 -1), axiCpdiInterpolator.cc (-1), axiCptiInterpolator.cc (-1), cpdiInterpolator.cc (-1), cptiInterpolator.cc (-1), fastAxiCpdiInterpolator.cc (-1), fastCpdiInterpolator.cc (-1)
  • Core/Grid/BoundaryConditions: AnnulusBCData.cc (-1), AnnulusBCData.h (-1), BCData.cc (new), BCDataArray.cc (+1 -2), BCGeomBase.cc (+4 -5), BCGeomBase.h (-1), BCUtils.h (+4 -4), BoundCond.h (-1), BoundCondReader.cc (+1 -2), CircleBCData.cc (-1), CircleBCData.h (new), DifferenceBCData.cc (-1), DifferenceBCData.h (-1), EllipseBCData.cc (-1), EllipseBCData.h (-1), RectangleBCData.cc (+1 -1), RectangleBCData.h (new), SideBCData.cc (-1), SideBCData.h (-1), UnionBCData.cc (-1), UnionBCData.h (-1)
  • Core/Grid/Variables: Array3.h (+3 -3), Array3Data.h (+1 -1), Array3Window.h (+2 -2), BaseIterator.h (+1 -1), CellIterator.h (+1 -1), ComputeSet.h (+1 -1), DifferenceIterator.h (new), GridIterator.h (new), GridSurfaceIterator.h (new), GridVariable.h (+3 -3), GridVariableBase.cc (-1), GridVariableBase.h (+1 -1), Iterator.h (+1 -1), ListOfCellsIterator.h (+1 -2), LocallyComputedPatchVarMap.cc (new), LocallyComputedPatchVarMap.h (+4 -4), NCVariable.h (+1 -1), NodeIterator.h (+1 -1), PSPatchMatlGhost.h (new), PSPatchMatlGhostRange.h (-2), ParticleSubset.cc (new), ParticleSubset.h (+9 -9), ParticleVariable.h (+5 -5), ParticleVariableBase.cc (-1), ParticleVariableBase.h (new), ParticleVariable_special.cc (-1), PerPatchBase.cc (-1), PerPatchBase.h (+5 -5), ReductionVariable.h (+2 -2), ReductionVariableBase.cc (new), ReductionVariable_special.cc (-1), SFCXVariable.h (+1 -1), SFCYVariable.h (+1 -1), SFCZVariable.h (+1 -1), SoleVariableBase.cc (new), SoleVariable_special.cc (new), Stencil4.cc (+2 -2), Stencil4.h (new), Stencil7.cc (+2 -2), Stencil7.h (+2 -2), UnionIterator.h (-1), Utils.h (new), VarLabel.cc (-1), VarLabel.h (+4 -4), Variable.cc (new), Variable.h (-3), constVariable.h (-1), ugc_templates.cc (new)
  • Core/IO: SpecializedRunLengthEncoder.h (new), UintahZlibUtil.cc (+1 -1)
  • Core/Labels: MPMICELabel.cc (-1)
  • Core/Malloc: AllocOS.cc (+2 -2), AllocOS.h (new), AllocPriv.h (+2 -2), Allocator.cc (+2 -2), Allocator.h (+5 -5), malloc.cc (+2 -3), new.cc (+8 -9)
  • Core/Math: CatmullRomSpline.h (new), CubicPWI.cc (new 2), CubicPWI.h (new 2), Expon.h (+1 -1), FastMatrix.cc (-1), FastMatrix.h (new), Gaussian.cc (+2 -2), Gaussian.h (+2 -2), LinearPWI.cc (new 2), LinearPWI.h (new 2), Matrix3.cc (+25 -26), Matrix3.h (+11 -5), MinMax.h (new), MiscMath.cc (+2 -2), MiscMath.h (+2 -2), PiecewiseInterp.cc (new 2), PiecewiseInterp.h (new 2), Primes.cc (new), Short27.cc (+17 -12), Short27.h (+2 -7), StaticObjectArray.h (-1), SymmMatrix3.cc (new), SymmMatrix3.h (-1), Weibull.cc (+2 -2), Weibull.h (new), sci_lapack.cc (new), sci_lapack.h (+2 -2)
  • Core/OS: Dir.cc (-1), Dir.h (new), Dir_boost.cc (+2 -1), ProcessInfo.cc (+2 -2), ProcessInfo.h (+2 -2), sock.cc (del), sock.h (del), sub.mk (new)
  • Core/Parallel: MPI_Communicator.cc (new 1), MPI_Communicator.h (new 1), PackBufferInfo.cc (+1 -1), Parallel.cc (-4), Parallel.h (+1 -1), ProcessorGroup.cc (-1)
  • Core/Persistent: Persistent.cc (+6 -6), Persistent.h (+9 -9), PersistentSTL.cc (+2 -2), PersistentSTL.h (+2 -2), Pstreams.cc (new 11), Pstreams.h (new 2)
  • Core/ProblemSpec: ProblemSpec.cc (-1), ProblemSpec.h (+3 -3)
  • Core/Thread: AtomicCounter.h (new), AtomicCounter_default.cc (new), AtomicCounter_gcc.cc (new), Barrier.h (new), Barrier_default.cc (new), CleanupManager.cc (new), CleanupManager.h (+2 -2), ConditionVariable.h (+2 -2), CrashPad.h (new), CrowdMonitor.h (new), CrowdMonitor_default.cc (+2 -2), CrowdMonitor_pthreads.cc (+2 -2), FutureValue.h (new), Guard.cc (new), Guard.h (+2 -2), Mailbox.h (new), Mutex.h (new), MutexPool.cc (+2 -2), MutexPool.h (new), Parallel.h (+3 -3), Parallel1.h (+3 -3), Parallel2.h (new), Parallel3.h (+3 -3), ParallelBase.cc (new), ParallelBase.h (+2 -2), RecursiveMutex.h (+2 -2), RecursiveMutex_default.cc (+2 -2), Reducer.h (+2 -2), Runnable.cc (+2 -2), Runnable.h (+2 -2), Semaphore.h (new), SimpleReducer.cc (+2 -2), SimpleReducer.h (new), Thread.cc (new), Thread.h (new), ThreadError.cc (new), ThreadError.h (new), ThreadGroup.cc (new), ThreadGroup.h (new), ThreadLock.cc (+2 -2), ThreadLock.h (+2 -2), ThreadPool.cc (+2 -2), ThreadPool.h (new), Thread_irix.cc (+2 -2), Thread_none.cc (new), Thread_pthreads.cc (+28 -28), Time.h (+2 -2), Time_altix.cc (+1 -1), Time_irix.cc (new), Time_unix.cc (new), WorkQueue.cc (new), WorkQueue.h (new)
  • Core/Util: Assert.h (new), DebugStream.cc (+2 -2), DebugStream.h (+2 -2), DynamicLoader.cc (new 4), DynamicLoader.h (new 3), Endian.cc (+2 -2), Environment.cc (+15 -16), Environment.h (+2 -2), FancyAssert.h (+3 -3), FileUtils.cc (+3 -3), FileUtils.h (new), InfoMapper.h (+4 -4), ProgressReporter.cc (new 2), ProgressReporter.h (new 2), ProgressiveWarning.cc (new), ProgressiveWarning.h (+2 -2), RWS.cc (new), RWS.h (+1 -1), RefCounted.cc (-1), RefCounted_gcc.cc (-1), Signals.cc (new 2), Signals.h (new 2), SizeTypeConvert.cc (+1 -1), SizeTypeConvert.h (new), Socket.cc (new 2), Socket.h (new 2), StringUtil.cc (new), StringUtil.h (+2 -2), Timer.cc (new 9), Timer.h (new 1), TypeDescription.cc (+58 -58), TypeDescription.h (+37 -38), Util.cc (+2 -2), XMLUtils.cc (-1), notset.h (new), soloader.cc (+5 -5), testEndian.h.in (new)
  • StandAlone: compare_uda.cc (+2 -3), partvarRange.cc (-2), restart_merger.cc (-1), selectpart.cc (-2), sus.cc (+2 -3)
  • StandAlone/Benchmarks: SimpleMath.cc (-1)
  • StandAlone/tools/compare_mms: compare_mms.cc (-1), compare_scalar.cc (-1)
  • StandAlone/tools/dumpfields: Args.cc (new), Args.h (new), FieldDiags.cc (new), FieldDiags.h (-1), FieldDumper.cc (-1), FieldSelection.cc (+1 -2), FieldSelection.h (+1 -1), InfoDumper.h (new), ScalarDiags.cc (-1), TensorDiags.cc (-1), TensorDiags.h (+2 -2), TextDumper.cc (-1), VectorDiags.cc (+1 -2), VectorDiags.h (+1 -1), dumpfields.cc (-2), dumpfields.cc.new (-2)
  • StandAlone/tools/extractors: extractF.cc (-2), extractS.cc (-2), extractV.cc (-2), faceextract.cc (-1), lineextract.cc (-1), partextract.cc (+2 -3), particle2tiff.cc (-1), timeextract.cc (-1)
  • StandAlone/tools/graphview: DaVinci.cc (+4 -5), GV_TaskGraph.cc (-1)
  • StandAlone/tools/mpi_test: async_mpi_test.cc (-1), mpi_test.cc (+13 -14)
  • StandAlone/tools/pfs: rawToUniqueGrains.cc (-1)
  • StandAlone/tools/puda: AA_MMS.cc (-1), ER_MMS.cc (-1), GV_MMS.cc (-1), PIC.cc (-1), POL.cc (new), asci.cc (-1), jacquie.cc (-1), jim1.cc (-1), jim2.cc (-1), jim3.cc (-1), monica1.cc (-1), monica2.cc (-1), pressure.cc (-1), puda.cc (-2), todd1.cc (-1), util.cc (+2 -2), varsummary.cc (+1 -2)
  • build_scripts: cd_templates_fields.py (new 1)
  • testprograms/CubeRootTest: CubeRootTest.cc (+1 -1)
  • testprograms/Malloc: test15.cc (-1)
  • testprograms/Regridders: TiledRegridder.h (+4 -4), benchmark.cc (-1), outputpatches.cc (-1), patchquality.cc (-1)
  • testprograms/TestBoxGrouper: Box.h (+2 -3), BoxRangeQuerier.h (+2 -2), TestBoxGrouper.cc (+11 -12)
  • testprograms/TestConsecutiveRangeSet: TestConsecutiveRangeSet.cc (new)
  • testprograms/TestFastMatrix: perffastmatrix.cc (+2 -2)
  • testprograms/TestRangeTree: TestRangeTree.cc (+11 -11)
  • testprograms/Thread: bps.cc (new), parallel.cc (new), threadexit.cc (+16 -16)

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