Computational Models
Simulations of Biological Systems
Multi-Physics Models of Cancer Cells
![]() ![]() CRA-NIH Computing Research Challenges in Biomedicine Workshop Recommendations D. Reed, C.R. Johnson. Note: Computing Research Association (CRA), 2007. |
![]() ![]() A Tensor Higher-Order Singular Value Decomposition for Integrative Analysis of DNA Microarray Data From Different Studies, L. Omberg, G.H. Golub, O. Alter. In Proceedings of the National Academy of Sciences, Vol. 104, No. 47, Proceedings of the National Academy of Sciences, pp. 18371–-18376. November, 2007. DOI: 10.1073/pnas.0709146104 |
![]() ![]() Genomic Signal Processing: From Matrix Algebra to Genetic Networks O. Alter. In Microarray Data Analysis: Methods in Molecular Biology, Vol. 377, Edited by M.J. Korenberg, Humana Press, Totowa, pp. 17--59. 2007. DOI: 10.1007/978-1-59745-390-5_2 |
![]() ![]() BioMesh3D: A Meshing Pipeline for Biomedical Models SCI Institute Technical Report, M. Callahan, M.J. Cole, J.F. Shepherd, J.G. Stinstra, C.R. Johnson. No. UUSCI-2007-009, University of Utah, 2007. |
![]() ![]() Hexahedral Mesh Generation for Biomedical Models in SCIRun SCI Institute Technical Report, J.F. Shepherd, C.R. Johnson. No. UUSCI-2007-008, University of Utah, 2007. |
![]() ![]() Discovery of Principles of Nature from Mathematical Modeling of DNA Microarray Data O. Alter. In Proceedings of the National Academy of Sciences, Vol. 103, No. 44, Proceedings of the National Academy of Sciences, pp. 16063--16064. October, 2006. DOI: 10.1073/pnas.0607650103 |
![]() ![]() Singular Value Decomposition of Genome-Scale mRNA Lengths Distribution Reveals Asymmetry in RNA Gel Electrophoresis Band Broadening, O. Alter, G. H. Golub. In Proceedings of the National Academy of Sciences, Vol. 103, No. 32, Proceedings of the National Academy of Sciences, pp. 11828--11833. July, 2006. DOI: 10.1073/pnas.0604756103 |
![]() ![]() Controlled Support MEG Imaging S. Nagarajan, O. Portniaguine, D. Hwang, C.R. Johnson, K. Sekihara. In NeuroImage, Vol. 15;33, No. 3, pp. 878--885. 2006. |
![]() ![]() ![]() Reconstructing the Pathways of a Cellular System from Genome-Scale Signals by Using Matrix and Tensor Computations, O. Alter, G.H. Golub. In Proceedings of the National Academy of Sciences, Vol. 102, No. 49, Proceedings of the National Academy of Sciences, pp. 17559--17564. November, 2005. DOI: 10.1073/pnas.0509033102 |
![]() ![]() Computational Simulation of Penetrating Trauma in Biological Soft Tissues Using the Material Point Method I. Ionescu, J. Guilkey, M. Berzins, R.M. Kirby, J.A. Weiss. In Proceedings, Medicine Meets Virtual Reality, Vol. 13, Edited by James D Westwood et al., IOS Press, pp. 213--218. 2005. ISBN: 1-58603-498-7 |
![]() ![]() Integrative Analysis of Genome-Scale Data by Using Pseudoinverse Projection Predicts Novel Correlation Between DNA Replication and RNA Transcription, O. Alter, G.H. Golub. In Proceedings of the National Academy of Sciences, Vol. 101, No. 47, Proceedings of the National Academy of Sciences, pp. 16577--16582. November, 2004. DOI: 10.1073/pnas.0406767101 |
![]() ![]() Biomedical Computing and Visualization Software Environments C.R. Johnson, R.S. MacLeod, S.G. Parker, D.M. Weinstein. In Comm. ACM, Vol. 47, No. 11, pp. 64--71. 2004. |