Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


 R.M. Kirby, S.J. Sherwin. “Aliasing Errors Due to Quadratic Non-Linearities On Triangular Spectral/hp Element Discretisations,” In Journal of Engineering Mathematics, Vol. 56, pp. 273--288. 2006.


A. Knoll, I. Wald, S.G. Parker, C.D. Hansen. “Interactive Isosurface Ray Tracing of Large Octree Volumes,” SCI Institute Technical Report, No. UUSCI-2006-026, University of Utah, 2006.


P.A. Koshevoy, T. Tasdizen, R.T. Whitaker. “Implementation of an Automatic Slice-to-Slice Registration Tool,” SCI Institute Technical Report, No. UUSCI-2006-018, University of Utah, 2006.


P.A. Koshevoy, T. Tasdizen, R.T. Whitaker. “Implementation of an Automatic Image Registration Tool,” SCI Institute Technical Report, No. UUSCI-2006-020, University of Utah, 2006.


P. Koshevoy, T. Tasdizen, R.T. Whitaker, B. Jones, R. Marc. “Assembly of Large Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy,” In Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, October, 2006.


G. Kumfert, D.E. Bernholdt, T.G.W. Epperly, J.A. Kohl, L.C. McInnes, S.G. Parker, J. Ray. “How the Common Component Architecture Advances Computational Science,” In J. Phys.: Conf. Ser., Vol. 46, pp. 479--493. 2006.


A. Lefohn, J.M. Kniss, R. Strzodka, S. Sengupta, J. Owens. “Glift: Generic, Efficient Random-Access GPU Data Structures,” In ACM Trans. Comp. Graph., Vol. 25, No. 1, pp. 1--37. January, 2006.


G. Li, X. Tricoche, C.D. Hansen. “GPUFLIC: Interactive and Accurate Dense Visualization of Unsteady Flows,” In Proceedings of Euro Vis 2006, pp. 29--34. 2006.


G. Li, X. Tricoche, C.D. Hansen. “Survey of Texture-based Techniques in Flow Visualization,” In VIsualization of Large and Unstructured Data Sets - Applications in Geospatial Planning, Modeling, and Engineering, Dagstuhl, Germany, GI-Edition, Lecture Notes in Informatics - Visualization of Large and Unstructured Data Sets. First workshop of the DFG's International Research Training Group, pp. 11--21. June, 2006.


O.E. Livne. “Clustering on Single Refinement Level: Berger-Rigoustos Algorithm,” SCI Institute Technical Report, No. UUSCI-2006-001, University of Utah, 2006.


O.E. Livne. “Minimum and Maximum Patch Size Clustering on a Single Refinement Level,” SCI Institute Technical Report, No. UUSCI-2006-002, University of Utah, 2006.


O.E. Livne. “Efficient Update of Persistent Patches in the Berger Rigoutsous Algorithm,” SCI Institute Technical Report, No. UUSCI-2006-003, University of Utah, 2006.


O.E. Livne. “Clustering Patches for Multi-Level Refined Grids: a Hierarchical Approach,” SCI Institute Technical Report, No. UUSCI-2006-004, University of Utah, 2006.


O.E. Livne. “ShockTube Problem - Status Report 1 Uni-Level Experiments,” SCI Institute Technical Report, No. UUSCI-2006-005, University of Utah, 2006.


O.E. Livne. “ICE Algorithm and the Davis Advection Scheme,” SCI Institute Technical Report, No. UUSCI-2006-006, University of Utah, 2006.


O.E. Livne. “ICE Algorithm for the Shocktube Problem,” SCI Institute Technical Report, No. UUSCI-2006-007, University of Utah, 2006.


L. Lorenzo, R.S. MacLeod, R.T. Whitaker, G. Adluru, E.V.R. DiBella. “Level Sets and Shape Models for Segmentation of Cardiac Perfusion MRI,” In Proceedings of International Society for Optical Engineering (SPIE) Conference on Medical Imaging 2006, Vol. 6144, pp. 1320--1331. 2006.


P. Lorenzen, M.W. Prastawa, B. Davis, G. Gerig, E. Bullitt, S. Joshi. “Multi-Modal Image Set Registration and Atlas Formation,” In Med Image Anal, Vol. 10, No. 3, pp. 440--451. June, 2006.


H. Lu, M. Berzins, C.E. Goodyer, P.K. Jimack, M. Walkley. “Adaptive High-order Finite Element Solution of Transient Elastohydrodynamic Lubrication Problems,” In Proc. IMechE Part J: J. Engrg. Tribology, Vol. 220, pp. 215--225. 2006.


H. Lu, M. Berzins, P.K. Jimack. “Application of the Adaptive Discontinuous Galerkin Method to Problems in Elastohydrodynamic Lubrication,” In Innovation in Engineering Computational Technology, Edited by B.H.V. Topping and G. Montero and R. Montenegro, Saxe-Coburg Publications, Stirling, pp. 169--191. 2006.