Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


S.G. Parker. “Component-Based Multi-Physics Simulations of Fires and Explosions,” In Proceedings of the 12th SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, CA, Note: Presented at the Minisymposium on Parallel Dynamic Data Management Infrastructures for Scientific & Engineering Applications, 2006.



S.G. Parker. “Why do Software Engineering Methods Fail for HPC?,” In Presented at Architectures and Algorithms for Petascale Computing, Schloss Dagstuhl, Germany, Vol. Seminar 06071, February, 2006.



S. Parker, K. Zhang, C. Damevski, C.R. Johnson. “Integrating Component-Based Scientific Computing Software,” In Parallel Processing for Scientific Computing, Edited by M.A. Heroux and P. Raghavan and H.D. Simon, SIAM, pp. 271--288. January, 2006.



V. Pascucci. “Topology Diagrams of Scalar Fields in Scientific Visualisation,” In Topological Data Structures for Surfaces, Note: UCRL-BOOK-200013, Edited by Sanjay Rana and Jo Wood, Wiley-Blackwell, pp. 121--129. May, 2006.
DOI: 10.1002/0470020288.ch8



V. Pegoraro, S.G. Parker. “Physically-Based Realistic Fire Rendering,” In Proceedings of the 2006 Eurographics Workshop on Natural Phenomena, pp. 51--59. 2006.



S. Pervez, G. Gopalakrishnan, R.M. Kirby, R. Thakur, W. Gropp. “Formal Verification of Programs that use MPI One-Sided Communications,” In Proceedings of EuroPVM-MPI 2006, Bonn, Germany, September 17-20, 2006.



A.R. Sanderson, R.M. Kirby, C.R. Johnson, L. Yang. “Advanced Reaction-Diffusion Models for Texture Synthesis,” In Journal of Graphics Tools, Vol. 11, No. 3, pp. 47--71. 2006.



A.R. Sanderson, X. Tricoche, C. Garth, S. Kruger, C. Sovinec, E. Held, J. Breslau. “Detection of Magnetic Nulls in Toroidal Geometry,” In Proceedings of the 48th Annual Meeting of the Division of Plasma Physics, 2006.



A.R. Sanderson, X. Tricoche, C. Garth, S. Kruger, C. Sovinec, E. Held, J. Breslau. “Visualizing Patterns in the Poincare Plot of a Magnetic Field,” In IEEE Visualization Conference 2006 Compendium, 2006.



J. Schreiner, C.E. Scheidegger, S. Fleishman, C.T. Silva. “Direct (Re)Meshing for Efficient Surface Processing,” SCI Institute Technical Report, No. UUSCI-2006-013, University of Utah, 2006.



J. Schreiner, C.E. Scheidegger, S. Fleishman, C.T. Silva. “Direct (Re)Meshing for Efficient Surface Processing,” In Computer Graphics Forum, Vol. 25, No. 3, Wiley-Blackwell, pp. 527--536. Sep, 2006.
DOI: 10.1111/j.1467-8659.2006.00972.x



J. Schreiner, C.E. Scheidegger, C.T. Silva. “High-Quality Extraction of Isosurfaces from Regular and Irregular Grids,” In IEEE Trans. Vis. Comp. Graph., Vol. 12, No. 5, pp. 1205--1212. 2006.



T. Schultz, B. Burgeth, J. Weickert. “Flexible Segmentation and Smoothing of DT-MRI Fields Through a Customizable Structure Tensor,” In Advances in Visual Computing, Lecture Notes in Computer Science, Vol. 4291, Edited by G. Bebis and R. Boyle and B. Parvin and D. Koracin and P. Remagnino and A. V. Nefian and M. Gopi and V. Pascucci and J. Zara and J. Molineros and H. Theisel and T. Malzbender, Springer, pp. 455--464. 2006.



Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources,” In IEEE Trans Biomed. Eng., Vol. 53, No. 10, pp. 2024--2034. October, 2006.



J.F. Shepherd. “Hexahedral Mesh Generation Constraints,” SCI Institute Technical Report, No. UUSCI-2006-010, University of Utah, 2006.



J.F. Shepherd, C.J. Tuttle, C.T. Silva, Y. Zhang. “Quality Improvement and Feature Capture in Hexahedral Meshes,” SCI Institute Technical Report, No. UUSCI-2006-029, University of Utah, 2006.



S.J. Sherwin, R.M. Kirby, J. Peiro, R.L. Taylor, O.C. Zienkiewicz. “On 2D Elliptic Discontinuous Galerkin Methods,” In International Journal of Numerical Methods in Engineering, Vol. 65, No. 5, pp. 752--784. 2006.



A.J. Stephens, S. Boulos, J. Bigler, I. Wald, S.G. Parker. “An Application of Scalable Massive Model Interaction using Shared-Memory Systems,” In Proceedings of The 8th Eurographics Symposium on Parallel Graphics and Visualization, pp. 19--26. 2006.



J.G. Stinstra, S.F. Roberts, J.B. Pormann, R.S. MacLeod, C.S. Henriquez. “A Model of 3D Propagation in Discrete Cardiac Tissue,” In Proceedings of Computers in Cardiology 2006, Vol. 33, pp. 41. 2006.



J. Strasser, V. Pascucci, K.-L. Ma. “Multi-layered Image Caching for Distributed Rendering of Large Multiresolution Datasets,” In Eurographics Symposium on Parallel Graphics and Visualization, Edited by Bruno Raffin and Alan Heirich and Luis Paulo Santos, Eurographics Association, Braga, Portugal pp. 171--177. 2006.
ISBN: 3-905673-40-1
ISSN: 1727-348X